View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15513_low_20 (Length: 287)
Name: NF15513_low_20
Description: NF15513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15513_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 32462157 - 32461880
Alignment:
| Q |
1 |
tgatatttatgattcaaacctaatgatcttaggatgacaattgagtcccgttgcccatcactcacattcaattataaattcttctattacatagaaaaat |
100 |
Q |
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| T |
32462157 |
tgatatttatgattcaaacctaatgatcttaggatgacaattgagtcccgttgcccatcactcacattcaattataaattcatctaatacatagaaaaat |
32462058 |
T |
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| Q |
101 |
tgttaatgggttggatctaatccatccatccaacaattttttcattatgatatgtaaatcgctattagaaaattttaaattatagacaggctaaatcaat |
200 |
Q |
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| T |
32462057 |
tgttaatgggttggatctaatccatccatctaacaattattttgttatgatatttagatcgctattaaaaaaatttaaattataaacgggttaaatcagt |
32461958 |
T |
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| Q |
201 |
ttctaaaatgcaaaaaccctgtctcttatcac--gatagagacaaaattaggtccaaataaattttatcgtatttcat |
276 |
Q |
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| T |
32461957 |
ctttaaaatgctaaaaatccgtctcttatcacgagatagagataaaattagatccaaataaattttatcgtatttcat |
32461880 |
T |
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