View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15513_low_21 (Length: 268)
Name: NF15513_low_21
Description: NF15513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15513_low_21 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 54244306 - 54244058
Alignment:
| Q |
19 |
atatacatttcatagatgtcgactttagcatatataatgtatcttccttgataattatttgaatgctagtcaatgtcgttagtcatgtaatgtggctgtt |
118 |
Q |
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| T |
54244306 |
atatacatgtcatagatgtcgactttagcatatataatgtatcttccttgataattatttgaatgctagtcaatgtcgttagtcatgtaatgtggctgtt |
54244207 |
T |
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| Q |
119 |
tgtggcatttctagtccttcatgagagttcttatgtccaacgataatggtgtttgcagtacaagagaacactaattttgctcgcattaatggttacatac |
218 |
Q |
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| T |
54244206 |
tgtggcatttctagtccttcatgagagttcttatgtccaacgataatggtgtttgcagtacaagagaacactaattttgctcgcattaatgg-tacatac |
54244108 |
T |
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| Q |
219 |
atgtcatagatgttgactttagcatagataatgtatcttccttgataatt |
268 |
Q |
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| T |
54244107 |
atgtcatagatgttgactttagcatagataatgtatcttccttgataatt |
54244058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 177 - 268
Target Start/End: Complemental strand, 54244342 - 54244251
Alignment:
| Q |
177 |
tacaagagaacactaattttgctcgcattaatggttacatacatgtcatagatgttgactttagcatagataatgtatcttccttgataatt |
268 |
Q |
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| T |
54244342 |
tacaagagaacactaattttgctcgcactaatggttatatacatgtcatagatgtcgactttagcatatataatgtatcttccttgataatt |
54244251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 54244111 - 54244025
Alignment:
| Q |
21 |
atacatttcatagatgtcgactttagcatatataatgtatcttccttgataattatttgaatgctagtcaatgtcgttagtcatgta |
107 |
Q |
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| T |
54244111 |
atacatgtcatagatgttgactttagcatagataatgtatcttccttgataattattagaatgctagtcaatgtcgttagacatgta |
54244025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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