View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15513_low_22 (Length: 247)
Name: NF15513_low_22
Description: NF15513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15513_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 36464243 - 36464465
Alignment:
| Q |
1 |
accaaactgcaatttaaattgcttttcatcaagtctaatttttggttagaaaagttcattacatgaatgttttgtttagaaatcaaagtctcctgaagaa |
100 |
Q |
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| T |
36464243 |
accaaaatgcaatttaaattgcttttcatcaagtctaatttttggttagaaaagttcattacatgaatgttttgtttagaaatcaaagtctcctgaagaa |
36464342 |
T |
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| Q |
101 |
aagnnnnnnngcctcttcttcaaaattgttggaagca-----------aataacaatgttatctaagctctgcttaaagttcagtgacaaaatatgttta |
189 |
Q |
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| T |
36464343 |
aagaaaaaaagcctcttcttcaaaattgttggaagcaaacacatacataataacaatgttatctaagctctgcttaaagttcagtgacaa---------a |
36464433 |
T |
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| Q |
190 |
aagctcaagttagttaaataatgctaaagatg |
221 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
36464434 |
aagctcaagttagttaaataatgctaaagatg |
36464465 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 14703654 - 14703704
Alignment:
| Q |
146 |
tgttatctaagctctgcttaaagttcagtgacaaaatatgtttaaagctca |
196 |
Q |
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| T |
14703654 |
tgttatccaagctctgcttaaagcttagtgacaaaatatgcttaaagctca |
14703704 |
T |
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