View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15513_low_3 (Length: 797)

Name: NF15513_low_3
Description: NF15513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15513_low_3
NF15513_low_3
[»] chr7 (1 HSPs)
chr7 (12-779)||(33217136-33217921)


Alignment Details
Target: chr7 (Bit Score: 627; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 12 - 779
Target Start/End: Complemental strand, 33217921 - 33217136
Alignment:
Q  12 taatacttgaacaaattactgatcataaaattatctgagtaaacaatttcagnnnnnnnnnnnnnnnnnnnnggacttgttcacattctgaagacagcta 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                    ||||||||||||||||||||||||||||    
T  33217921 taatacttgaacaaattactgatcataaaattatctgagtaaacaatttcagaaaataaaataattaaaaaaggacttgttcacattctgaagacagcta 33217822  T
Q  112 tacaaacgtgtgtgttttaaggtaccattttcaatttgctagctttttcaaaacgtgctgtacaaaaatgacataattttcaacgcaatgttccttcgtc 211  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33217821 tacaaacgtgtgtgttttaaggtacccttttcaatttgctagctttttgaaaacgcgctgtacaaaaatgacataattttcaacgcaatgttccttcgtc 33217722  T
Q  212 tatgtcaaatatctcattcgggataatagcaagaaaataaaagtacagttgattttcttttatgaagagttagtacatatttggattatagcaaaagcta 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33217721 tatgtcaaatatctcattcgggataatagcaagaaaataaaagtacagttaattttcttttatgaagagttagtacatatttggattatagcaaaagcta 33217622  T
Q  312 tacttaccaaaattagggcgtgtagttttgtcaacctcacctctcatccaaacatacacttactagcttgatgattagagtttta--------------- 396  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||                   
T  33217621 tacttaccaaaattagggcgtgtagttttgtcaagctcacctctcatccaaacatacacttactagcttgacgattagagttttaatacctatgcattga 33217522  T
Q  397 ---tcaaataatcattcttgttaaaatatcactttgttatttacacgatgaggcataattagatgtcattcaactcataacttgccgcaacatccggccc 493  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33217521 tgatcaaataatcattcttgttaaaatatcactttgttatttacacgatgaggcataattagatgtcattcaactcataacttgccgcaacatccggccc 33217422  T
Q  494 tggacaagcgaaaaactgttgtcgtttcttaaaggattattcgtaaattgtctcaattcaacaaagtaaacatggggaagatcttatgatcattctgtac 593  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33217421 tggacaagcgaaaaactgttgtcgtttcttaaaggattattcgtaaattgtctcaattcaacaaagtaaacatggggaagatcttatgatcattctgtac 33217322  T
Q  594 aaaggacacgagtcttcgagagacaattaatctcacaccattttaatgtctacatttatgagtgttacccacggaaatcgctatttgagttgtcatcgta 693  Q
    ||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33217321 aaagggcacgagtcttcgagagacaattaatcttacaccatttcaatgtctacatttatgagtgttacccacggaaatcgctatttgagttgtcatcgta 33217222  T
Q  694 tgtattgaaaatatcactatatttacttgcctacttctcaaggcacacaaattgtcctcctcggaaggtggatgacggaaaggaat 779  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33217221 tgtattgaaaatatcactatatttacttgcctacttctcaaggcacacaaattgtcctcctcagaaggtggatgacggaaaggaat 33217136  T

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