View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15513_low_30 (Length: 221)

Name: NF15513_low_30
Description: NF15513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15513_low_30
NF15513_low_30
[»] chr4 (11 HSPs)
chr4 (20-72)||(24481958-24482010)
chr4 (131-173)||(24482069-24482111)
chr4 (131-173)||(24481937-24481979)
chr4 (27-71)||(24481833-24481877)
chr4 (27-71)||(24482067-24482111)
chr4 (131-173)||(24481835-24481877)
chr4 (131-173)||(24481967-24482009)
chr4 (27-71)||(24481935-24481979)
chr4 (37-71)||(24481439-24481473)
chr4 (20-53)||(24481856-24481889)
chr4 (27-59)||(24482169-24482201)


Alignment Details
Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 24481958 - 24482010
Alignment:
Q  20 gtggggatgacttgtacacatatggaggaggtggcggtgacttgtatacatac 72  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24481958 gtgggggtgacttgtacacatatggaggaggtggcggtgacttgtatacatac 24482010  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 24482069 - 24482111
Alignment:
Q  131 acttgtacacgtatggaggaggtgggggtgacttgtatacata 173  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  24482069 acttgtacacgtatggaggaggtgggggtgacttgtatacata 24482111  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 24481937 - 24481979
Alignment:
Q  131 acttgtacacgtatggaggaggtgggggtgacttgtatacata 173  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  24481937 acttgtacacgtatggaggaggtgggggtgacttgtacacata 24481979  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 24481833 - 24481877
Alignment:
Q  27 tgacttgtacacatatggaggaggtggcggtgacttgtatacata 71  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||    
T  24481833 tgacttgtacacatatggaggaggtgggggtgacttgtacacata 24481877  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 24482067 - 24482111
Alignment:
Q  27 tgacttgtacacatatggaggaggtggcggtgacttgtatacata 71  Q
    |||||||||||| |||||||||||||| |||||||||||||||||    
T  24482067 tgacttgtacacgtatggaggaggtgggggtgacttgtatacata 24482111  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 24481835 - 24481877
Alignment:
Q  131 acttgtacacgtatggaggaggtgggggtgacttgtatacata 173  Q
    |||||||||| |||||||||||||||||||||||||| |||||    
T  24481835 acttgtacacatatggaggaggtgggggtgacttgtacacata 24481877  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 24481967 - 24482009
Alignment:
Q  131 acttgtacacgtatggaggaggtgggggtgacttgtatacata 173  Q
    |||||||||| |||||||||||||| |||||||||||||||||    
T  24481967 acttgtacacatatggaggaggtggcggtgacttgtatacata 24482009  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 24481935 - 24481979
Alignment:
Q  27 tgacttgtacacatatggaggaggtggcggtgacttgtatacata 71  Q
    |||||||||||| |||||||||||||| ||||||||||| |||||    
T  24481935 tgacttgtacacgtatggaggaggtgggggtgacttgtacacata 24481979  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 24481439 - 24481473
Alignment:
Q  37 acatatggaggaggtggcggtgacttgtatacata 71  Q
    ||||||||||||||||||||||||||||| |||||    
T  24481439 acatatggaggaggtggcggtgacttgtagacata 24481473  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 24481856 - 24481889
Alignment:
Q  20 gtggggatgacttgtacacatatggaggaggtgg 53  Q
    |||||| |||||||||||||||||||||||||||    
T  24481856 gtgggggtgacttgtacacatatggaggaggtgg 24481889  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 24482169 - 24482201
Alignment:
Q  27 tgacttgtacacatatggaggaggtggcggtga 59  Q
    ||||||||||||||||||||||||||| |||||    
T  24482169 tgacttgtacacatatggaggaggtggtggtga 24482201  T

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