View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15513_low_31 (Length: 211)
Name: NF15513_low_31
Description: NF15513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15513_low_31 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 7 - 211
Target Start/End: Complemental strand, 36287458 - 36287252
Alignment:
| Q |
7 |
caatgacactaaaagtttatagcccctcattgctgctatcgacgccaatccaatgccggtgttaccacttgttggctcaacaag--cactctttatacaa |
104 |
Q |
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| T |
36287458 |
caatgacactaaaagtttatagcccctcattgctgctatcgacgccaatccaatgccggtgttaccacttgttggctcaacaagaacactctttatacaa |
36287359 |
T |
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| Q |
105 |
ccattgtttaaaaagattaaactcacttagatcatacattcaacgataggaacaatactatatgtggctgaacagacacactataacactataagcaata |
204 |
Q |
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| T |
36287358 |
ccattgtttaaaaagattaacctcacttagatcatacattcaacgataggaacaatactatatgtggctgaacagacacactttaacattataagcaata |
36287259 |
T |
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| Q |
205 |
acattgc |
211 |
Q |
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||||||| |
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| T |
36287258 |
acattgc |
36287252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 36281513 - 36281352
Alignment:
| Q |
13 |
cactaaaagtttatagcccctcattgctgctatcgacgccaatccaatgccggtgttaccacttgttggctcaacaag--cactctttatacaaccattg |
110 |
Q |
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| T |
36281513 |
cactaaaagtttatagcccctcattgctgctatcgacgccaatcctatgccagtgttaccacttgttggctcaacaagaacagtctttatacaaacattg |
36281414 |
T |
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| Q |
111 |
tttaaaaagattaaactcacttaga-tcatacattcaacgataggaacaatactatatgtgg |
171 |
Q |
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| T |
36281413 |
tttaaaaagattaaacttacttggatttttaaattcaacaatatgaacaatactataggtgg |
36281352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 36293000 - 36292801
Alignment:
| Q |
14 |
actaaaagtttatagcccctcattgctgctatcgacgccaatccaatgccggtgttaccacttgttggctcaacaagcac--tctttatacaaccattgt |
111 |
Q |
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| T |
36293000 |
actaaaagtttatagcctctcagtgctgcgatcgatgccaatcctatgccggtgttgccactcgtagcctcaataagaacagtctttatacaatcattgt |
36292901 |
T |
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| Q |
112 |
ttaaaaagattaaactcacttagatcatacattcaacgataggaacaatactatatgtggctgaacagacacactataacactataagcaataacattgc |
211 |
Q |
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| T |
36292900 |
ttaaaaagattaaacttacttagattgtacattccacaacatgaacaatactatatgtggttgaacaaatagacttcaacattataagcaataacattgc |
36292801 |
T |
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