View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15513_low_33 (Length: 204)
Name: NF15513_low_33
Description: NF15513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15513_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 6805154 - 6805327
Alignment:
| Q |
15 |
agaagaacacacttcttgaactacattcacttccttatcaactttgctctaccaaacccctttgagatttgaagtcgatctgtgataccaaaatgtgcca |
114 |
Q |
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| T |
6805154 |
agaagaacacacttcttgaactacattcacttccttatcaactttgctctaccaaacccctttgagatttgaagtcgatctgtgataccaaaatgtgcca |
6805253 |
T |
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| Q |
115 |
taagaagccatacatgtgttaatagttccccaccatgtcttaggtgctgagcatgatgaattacctgacaatgg |
188 |
Q |
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| T |
6805254 |
taagaagccatacatgtgttaatagttccccaccatgtcttaggtgctgagcatgatgaattacctgacaatgg |
6805327 |
T |
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Target: chr8 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 33 - 188
Target Start/End: Original strand, 7327315 - 7327470
Alignment:
| Q |
33 |
aactacattcacttccttatcaactttgctctaccaaacccctttgagatttgaagtcgatctgtgataccaaaatgtgccataagaagccatacatgtg |
132 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
7327315 |
aactacattcacttccttatcaactttgctctaccaaacccctttgagatttgaagtcgatctgttataccaagatgtgccataagaagccatacatgtg |
7327414 |
T |
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| Q |
133 |
ttaatagttccccaccatgtcttaggtgctgagcatgatgaattacctgacaatgg |
188 |
Q |
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| T |
7327415 |
ttaataattcaccaccatgccttagatgttgagcatgatgaattacctgacaatgg |
7327470 |
T |
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