View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15513_low_8 (Length: 523)
Name: NF15513_low_8
Description: NF15513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15513_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Complemental strand, 53123694 - 53123182
Alignment:
| Q |
1 |
attggttctgtaatctttcacattggtggttcgttgtgctgttcagtatctattcttcccaaaaattgcctcaaagacactgcaaacagctttaacaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53123694 |
attggttctgtaatctttcacattggtggttcgttgtgctgttcagtatctattcttcccaaaaattgcctcaaagacactgcaaacagctttaacaaac |
53123595 |
T |
|
| Q |
101 |
gaaaaccatttgcttggttcaaatccaacccggatactacaaaacaaaactattctggaaaatggtctcaaaaggctaataccctttgggagcaattcac |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53123594 |
gaaaaccatttgcttggttcgaatccaacccggatactacaaaacaaaactattctggaaaatggtctcaaaaggctaataccctttgggagcaattcac |
53123495 |
T |
|
| Q |
201 |
cagcgtataagagaaaaccaaaaccagtgaagaggcaaatacagatggaactaaacttcttggtattatgaaaggtcttcaatattttcatttcacttgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53123494 |
cagcgtataagagaaaaccaaaaccagtgaagaggcaaatacagatggaactgaacttcttggtattatgaaaggtcttcaatattttcatttcacttgt |
53123395 |
T |
|
| Q |
301 |
gtgcctcagattttgcacttatgtcaaaattttgtttcttttcctctttgtgcttttaaannnnnnncactctt--cacagttaccaagaattgcagtgt |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
53123394 |
gtgcctcagattttgcacttatgtcaaaattttgtttcttttcctctttgtgcttttaaatttttttcactcttcacacagttaccaagaattgcagtgt |
53123295 |
T |
|
| Q |
399 |
aagttctcagtctataattgcctttttcgagttttctattcatgcttcttatcaatatgacgaaggaaatccaagtttttgcttgtaactttgttccagt |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
53123294 |
aagttctcagtctataattgcctttttcgagttttctattcatgcttcttatcaatatgacgaaggaaatccaagtttttgcttgtacctttgttccagt |
53123195 |
T |
|
| Q |
499 |
ccctctgaatatt |
511 |
Q |
| |
|
||||||||||||| |
|
|
| T |
53123194 |
ccctctgaatatt |
53123182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 6504730 - 6504682
Alignment:
| Q |
269 |
tgaaaggtcttcaatattttcatttcacttgtgtgcctcagattttgca |
317 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
6504730 |
tgaaaggtcttcaatatcttcattttacttgtgtgcctcagattttgca |
6504682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 62 - 128
Target Start/End: Complemental strand, 6505112 - 6505046
Alignment:
| Q |
62 |
aaaattgcctcaaagacactgcaaacagctttaacaaacgaaaaccatttgcttggttcaaatccaa |
128 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| ||||| ||||||||| |||||||||||| ||||| |
|
|
| T |
6505112 |
aaaattgcctcaaagacactccaagtagctttgacaaaagaaaaccatatgcttggttcaagtccaa |
6505046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University