View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15513_low_9 (Length: 519)

Name: NF15513_low_9
Description: NF15513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15513_low_9
NF15513_low_9
[»] chr7 (7 HSPs)
chr7 (20-257)||(11395911-11396148)
chr7 (20-207)||(11380583-11380770)
chr7 (21-207)||(11403983-11404169)
chr7 (209-297)||(5372484-5372572)
chr7 (20-152)||(11452723-11452848)
chr7 (240-308)||(44266556-44266624)
chr7 (213-275)||(17765716-17765778)
[»] chr3 (4 HSPs)
chr3 (211-308)||(41708553-41708650)
chr3 (208-308)||(2004281-2004381)
chr3 (358-441)||(2004428-2004511)
chr3 (211-297)||(36653131-36653216)
[»] chr5 (3 HSPs)
chr5 (358-441)||(6360169-6360252)
chr5 (208-265)||(6360321-6360378)
chr5 (258-297)||(26002867-26002906)
[»] chr1 (7 HSPs)
chr1 (208-279)||(19492575-19492646)
chr1 (211-308)||(48743700-48743797)
chr1 (211-307)||(49835074-49835170)
chr1 (211-279)||(7577174-7577242)
chr1 (211-279)||(8806897-8806965)
chr1 (211-297)||(43276555-43276641)
chr1 (208-297)||(51739563-51739652)
[»] chr2 (3 HSPs)
chr2 (211-308)||(35786157-35786254)
chr2 (214-279)||(31493772-31493837)
chr2 (211-294)||(22595653-22595736)
[»] chr4 (6 HSPs)
chr4 (358-441)||(6739495-6739578)
chr4 (208-308)||(6739353-6739444)
chr4 (211-279)||(12044023-12044091)
chr4 (212-279)||(30449496-30449563)
chr4 (206-295)||(53883296-53883385)
chr4 (206-295)||(53889410-53889499)
[»] chr8 (6 HSPs)
chr8 (91-177)||(35401269-35401358)
chr8 (208-297)||(9949001-9949090)
chr8 (218-297)||(12141705-12141784)
chr8 (211-279)||(9583958-9584026)
chr8 (211-308)||(16920476-16920572)
chr8 (206-279)||(25302808-25302881)
[»] scaffold0361 (1 HSPs)
scaffold0361 (211-297)||(10146-10232)
[»] chr6 (3 HSPs)
chr6 (207-279)||(13821796-13821868)
chr6 (413-493)||(13821946-13822026)
chr6 (214-305)||(26331542-26331633)
[»] scaffold0098 (1 HSPs)
scaffold0098 (211-279)||(17861-17930)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 11396148 - 11395911
Alignment:
Q  20 gttgttgctgtcgccgcagcaagcttctttgccttttaaattgtttgtaatgagcttttgaggnnnnnnntgtgttgttgttatattggtgcaccttgtg 119  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||       ||||||||||||||||||||||||||||||    
T  11396148 gttgttgctgtcgccgcagctggcttctttgccttttaaattgtttgtaacgagcttttgaggaaataaatgtgttgttgttatattggtgcaccttgtg 11396049  T
Q  120 ctatgttgtgtttgtgaaatgtgcatgatcataatcatattatacacatcaagaaatttataatattcaatatgattataatatcaagcaaggttgtcaa 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  11396048 ctatgttgtgtttgtgaaatgtgcatgatcataatcatattatacacatcaagaaatttataatattcaatatgattataatatcaaataaggttgtcaa 11395949  T
Q  220 aatcgggatcctactaaagatcgttggagcatagaaag 257  Q
    ||| ||||||||| ||||||||||||| ||||||||||    
T  11395948 aattgggatcctattaaagatcgttggggcatagaaag 11395911  T

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Target: chr7; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 11380770 - 11380583
Alignment:
Q  20 gttgttgctgtcgccgcagcaagcttctttgccttttaaattgtttgtaatgagcttttgaggnnnnnnntgtgttgttgttatattggtgcaccttgtg 119  Q
    ||||||||||||||||||||  ||| |||||||||||||||||||||||| ||||||||||||       ||||||||||||||||||||||||||||||    
T  11380770 gttgttgctgtcgccgcagctggctactttgccttttaaattgtttgtaacgagcttttgaggaaataaatgtgttgttgttatattggtgcaccttgtg 11380671  T
Q  120 ctatgttgtgtttgtgaaatgtgcatgatcataatcatattatacacatcaagaaatttataatattcaatatgattataatatcaag 207  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11380670 ctatattgtgtttgtgaaatgtgcatgatcataatcatattatacacatcaagaaatttataatattgaatatgattataatatcaag 11380583  T

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Target: chr7; HSP #3
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 11404169 - 11403983
Alignment:
Q  21 ttgttgctgtcgccgcagcaagcttctttgccttttaaattgtttgtaatgagcttttgaggnnnnnnntgtgttgttgttatattggtgcaccttgtgc 120  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||       |||||||||||||||||||||||||||||||    
T  11404169 ttgttgctgtcgccgcagctggcttctttgccttttaaattgtttgtaacgagcttttgaggaaataaatgtgttgttgttatattggtgcaccttgtgc 11404070  T
Q  121 tatgttgtgtttgtgaaatgtgcatgatcataatcatattatacacatcaagaaatttataatattcaatatgattataatatcaag 207  Q
    ||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  11404069 tatgttgtgtttgtgaaatgtgcatgatcataatagtattatacaaatcaagaaatttataatattgaatatgattataatatcaag 11403983  T

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Target: chr7; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 5372572 - 5372484
Alignment:
Q  209 aaggttgtcaaaatcgggatcctactaaagatcgttggagcatagaaagagcgtagatcgtaggatcgtaacaaggatcataagatccc 297  Q
    ||||||||||||||||| |||| ||||||||||||||| | ||||||| ||||||||||||| ||| ||||||||||||||||||||||    
T  5372572 aaggttgtcaaaatcggaatcccactaaagatcgttggggtatagaaaaagcgtagatcgtaagatggtaacaaggatcataagatccc 5372484  T

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Target: chr7; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 11452848 - 11452723
Alignment:
Q  20 gttgttgctgtcgccgcagcaagcttctttgccttttaaattgtttgtaatgagcttttgaggnnnnnnntgtgttgttgttatattggtgcaccttgtg 119  Q
    |||||||||||||||||||   | |||||||||||||||||| |||||||||       ||||       | ||||||||| | ||||||||||||||||    
T  11452848 gttgttgctgtcgccgcagttggtttctttgccttttaaattatttgtaatg-------gaggaaataaatttgttgttgtaacattggtgcaccttgtg 11452756  T
Q  120 ctatgttgtgtttgtgaaatgtgcatgatcata 152  Q
    |||||||||||||||||||||||||||||||||    
T  11452755 ctatgttgtgtttgtgaaatgtgcatgatcata 11452723  T

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Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 240 - 308
Target Start/End: Original strand, 44266556 - 44266624
Alignment:
Q  240 tcgttggagcatagaaagagcgtagatcgtaggatcgtaacaaggatcataagatcccgcctaatagac 308  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  44266556 tcgttggggtatagaaagagcgtagatcgtaggatcgtaacaaggatcgtaagatcccacctaatagac 44266624  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 17765778 - 17765716
Alignment:
Q  213 ttgtcaaaatcgggatcctactaaagatcgttggagcatagaaagagcgtagatcgtaggatc 275  Q
    |||||||||||||||||  ||||||||||||||| | | ||||| ||||||||||||| ||||    
T  17765778 ttgtcaaaatcgggatctcactaaagatcgttggggtacagaaaaagcgtagatcgtaagatc 17765716  T

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Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 41708553 - 41708650
Alignment:
Q  211 ggttgtcaaaatcgggatcctactaaagatcgttggagcatagaaagagcgtagatcgtaggatcgtaacaaggatcataagatcccgcctaatagac 308  Q
    |||||||||||||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41708553 ggttgtcaaaatcgagatcccactaaagatcgttggggtatagaaagagcgtagatcgtaggatcgtaacaaggatcataagatcccacctaatagac 41708650  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 208 - 308
Target Start/End: Original strand, 2004281 - 2004381
Alignment:
Q  208 caaggttgtcaaaatcgggatcctactaaagatcgttggagcatagaaagagcgtagatcgtaggatcgtaacaaggatcataagatcccgcctaataga 307  Q
    ||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||| ||||||||| |||||||||    
T  2004281 caaggttgtcaaaatcgagttcctactaaagatcgttggggcatagaaagagcgtaaatcgtaagatcgtaacaaggatcgtaagatcccacctaataga 2004380  T
Q  308 c 308  Q
    |    
T  2004381 c 2004381  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 358 - 441
Target Start/End: Original strand, 2004428 - 2004511
Alignment:
Q  358 ctttttatcaatcatcattctcatattacttgagcatcttttagaaacttcatacaaataacaacacatcaatttcttaaacat 441  Q
    |||||||| |||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||    
T  2004428 ctttttattaatcatcattctcatattacttgagcctcatttagaaacttcataaaaataacaacacatcaatttcttaaacat 2004511  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 211 - 297
Target Start/End: Complemental strand, 36653216 - 36653131
Alignment:
Q  211 ggttgtcaaaatcgggatcctactaaagatcgttggagcatagaaagagcgtagatcgtaggatcgtaacaaggatcataagatccc 297  Q
    |||||||||||||||||||| ||||||||||||  | | ||||||| |||||||||||||||||||||||||||||| |||||||||    
T  36653216 ggttgtcaaaatcgggatcccactaaagatcgtgag-gtatagaaaaagcgtagatcgtaggatcgtaacaaggatcgtaagatccc 36653131  T

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Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 358 - 441
Target Start/End: Complemental strand, 6360252 - 6360169
Alignment:
Q  358 ctttttatcaatcatcattctcatattacttgagcatcttttagaaacttcatacaaataacaacacatcaatttcttaaacat 441  Q
    |||||||| ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  6360252 ctttttattaatcatcattctcatattaattgagcatcatttagaaacttcataaaaataacaacacatcaatttcttaaacat 6360169  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 208 - 265
Target Start/End: Complemental strand, 6360378 - 6360321
Alignment:
Q  208 caaggttgtcaaaatcgggatcctactaaagatcgttggagcatagaaagagcgtaga 265  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6360378 caaggttgtcaaaatcgggatcctactaaagatcgttggggcatagaaagagcgtaga 6360321  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 297
Target Start/End: Original strand, 26002867 - 26002906
Alignment:
Q  258 agcgtagatcgtaggatcgtaacaaggatcataagatccc 297  Q
    ||||||||||||| |||||||||||||||| |||||||||    
T  26002867 agcgtagatcgtacgatcgtaacaaggatcgtaagatccc 26002906  T

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Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 19492575 - 19492646
Alignment:
Q  208 caaggttgtcaaaatcgggatcctactaaagatcgttggagcatagaaagagcgtagatcgtaggatcgtaa 279  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  19492575 caaggttgtcaaaatcgggatcctactaaagatcgttggggcatagaaagagcgtagatcgtaggatcgtaa 19492646  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 48743700 - 48743797
Alignment:
Q  211 ggttgtcaaaatcgggatcctactaaagatcgttggagcatagaaagagcgtagatcgtaggatcgtaacaaggatcataagatcccgcctaatagac 308  Q
    |||||||||||||| ||||| ||||||||||||||| | |||||||||| |||||||||||||| |||||||||||| ||||||||| ||||||||||    
T  48743700 ggttgtcaaaatcgagatcccactaaagatcgttggggtatagaaagagtgtagatcgtaggatggtaacaaggatcgtaagatcccacctaatagac 48743797  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 211 - 307
Target Start/End: Complemental strand, 49835170 - 49835074
Alignment:
Q  211 ggttgtcaaaatcgggatcctactaaagatcgttggagcatagaaagagcgtagatcgtaggatcgtaacaaggatcataagatcccgcctaataga 307  Q
    |||||||||||||||||||  ||||||||||||||| | || |||| ||||||||||||||||||||||||| |||| ||||||||| || ||||||    
T  49835170 ggttgtcaaaatcgggatctcactaaagatcgttggggtatggaaaaagcgtagatcgtaggatcgtaacaaagatcgtaagatcccaccaaataga 49835074  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 7577174 - 7577242
Alignment:
Q  211 ggttgtcaaaatcgggatcctactaaagatcgttggagcatagaaagagcgtagatcgtaggatcgtaa 279  Q
    |||||||||||||||||||| ||||||||||||||| | ||||||| ||||||||||||||||| ||||    
T  7577174 ggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtagatcgtaggattgtaa 7577242  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 8806897 - 8806965
Alignment:
Q  211 ggttgtcaaaatcgggatcctactaaagatcgttggagcatagaaagagcgtagatcgtaggatcgtaa 279  Q
    |||||||||||||||||||||||||||||| ||||| | |||||||  |||||||||||||||||||||    
T  8806897 ggttgtcaaaatcgggatcctactaaagattgttggggtatagaaaaggcgtagatcgtaggatcgtaa 8806965  T

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Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 211 - 297
Target Start/End: Complemental strand, 43276641 - 43276555
Alignment:
Q  211 ggttgtcaaaatcgggatcctactaaagatcgttggagcatagaaagagcgtagatcgtaggatcgtaacaaggatcataagatccc 297  Q
    |||||||||| ||||||||| ||  ||||||||| | |||||||||||||||| ||| ||||||||||||| ||||| |||||||||    
T  43276641 ggttgtcaaactcgggatcccaccgaagatcgtttgggcatagaaagagcgtaaatcataggatcgtaacacggatcgtaagatccc 43276555  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 208 - 297
Target Start/End: Complemental strand, 51739652 - 51739563
Alignment:
Q  208 caaggttgtcaaaatcgggatcctactaaagatcgttggagcatagaaagagcgtagatcgtaggatcgtaacaaggatcataagatccc 297  Q
    ||||||||||||||||||||||  ||  ||||||||| | | || |||| | |||| |||||||||||||||||| |||| |||||||||    
T  51739652 caaggttgtcaaaatcgggatctcacctaagatcgtttgggtattgaaaaatcgtaaatcgtaggatcgtaacaaagatcgtaagatccc 51739563  T

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Target: chr2 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 35786254 - 35786157
Alignment:
Q  211 ggttgtcaaaatcgggatcctactaaagatcgttggagcatagaaagagcgtagatcgtaggatcgtaacaaggatcataagatcccgcctaatagac 308  Q
    |||||||||||||| ||||| |||||||||||| || | |||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  35786254 ggttgtcaaaatcgagatcccactaaagatcgtaggggtatagaaagagtgtagatcgtaggatcgtaacaaggatcgtaagatcccacctaatagac 35786157  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 31493837 - 31493772
Alignment:
Q  214 tgtcaaaatcgggatcctactaaagatcgttggagcatagaaagagcgtagatcgtaggatcgtaa 279  Q
    ||||||||||||||| | ||||||||||||||| | ||||||| ||||||||||||||||| ||||    
T  31493837 tgtcaaaatcgggattcaactaaagatcgttggggtatagaaaaagcgtagatcgtaggattgtaa 31493772  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 294
Target Start/End: Original strand, 22595653 - 22595736
Alignment:
Q  211 ggttgtcaaaatcgggatcctactaaagatcgttggagcatagaaagagcgtagatcgtaggatcgtaacaaggatcataagat 294  Q
    |||||||||||||||||||| |||||||||||||   | ||| ||| |||||||||||||||||| ||| | ||||| ||||||    
T  22595653 ggttgtcaaaatcgggatccaactaaagatcgttaaggtataaaaaaagcgtagatcgtaggatcttaagacggatcgtaagat 22595736  T

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Target: chr4 (Bit Score: 64; Significance: 9e-28; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 358 - 441
Target Start/End: Original strand, 6739495 - 6739578
Alignment:
Q  358 ctttttatcaatcatcattctcatattacttgagcatcttttagaaacttcatacaaataacaacacatcaatttcttaaacat 441  Q
    ||||| || ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||    
T  6739495 cttttcattaatcatcattctcatattacttgagcatcatttagaaacttcataaaaataacaacacaacaatttcttaaacat 6739578  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 208 - 308
Target Start/End: Original strand, 6739353 - 6739444
Alignment:
Q  208 caaggttgtcaaaatcgggatcctactaaagatcgttggagcatagaaagagcgtagatcgtaggatcgtaacaaggatcataagatcccgcctaataga 307  Q
    |||||||||||||||||||||||||         ||||| |||||||||||||||||||| ||||||||||||||||||| |||| |||| |||||||||    
T  6739353 caaggttgtcaaaatcgggatccta---------gttggggcatagaaagagcgtagatcataggatcgtaacaaggatcgtaagctcccacctaataga 6739443  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 12044091 - 12044023
Alignment:
Q  211 ggttgtcaaaatcgggatcctactaaagatcgttggagcatagaaagagcgtagatcgtaggatcgtaa 279  Q
    |||||||||||||||||||| ||||||||||||||| | ||||||| ||||||| ||||||||||||||    
T  12044091 ggttgtcaaaatcgggatcccactaaagatcgttggggtatagaaaaagcgtaggtcgtaggatcgtaa 12044023  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 30449563 - 30449496
Alignment:
Q  212 gttgtcaaaatcgggatcctactaaagatcgttggagcatagaaagagcgtagatcgtaggatcgtaa 279  Q
    ||||||||||||||||||| ||||||||||||||| |  |||||| |||||||||| |||||||||||    
T  30449563 gttgtcaaaatcgggatcccactaaagatcgttggggtgtagaaaaagcgtagatcataggatcgtaa 30449496  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 295
Target Start/End: Complemental strand, 53883385 - 53883296
Alignment:
Q  206 agcaaggttgtcaaaatcgggatcctactaaagatcgttggagcatagaaagagcgtagatcgtaggatcgtaacaaggatcataagatc 295  Q
    |||| ||||||| ||||| |||||| |||||||||| ||||   ||||||| ||||||||| ||||||| |||||||||||  |||||||    
T  53883385 agcatggttgtcgaaatcaggatccgactaaagatcattgggatatagaaaaagcgtagattgtaggatagtaacaaggattgtaagatc 53883296  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 295
Target Start/End: Complemental strand, 53889499 - 53889410
Alignment:
Q  206 agcaaggttgtcaaaatcgggatcctactaaagatcgttggagcatagaaagagcgtagatcgtaggatcgtaacaaggatcataagatc 295  Q
    |||| ||||||| ||||| |||||| |||||||||| ||||   ||||||| ||||||||| ||||||| |||||||||||  |||||||    
T  53889499 agcatggttgtcgaaatcaggatccgactaaagatcattgggatatagaaaaagcgtagattgtaggatagtaacaaggattgtaagatc 53889410  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 91 - 177
Target Start/End: Complemental strand, 35401358 - 35401269
Alignment:
Q  91 gtgttgttgttatattggtgcaccttgtgctatgttgtgtttgtgaaatgtgcatgatcataatcat---attatacacatcaagaaatt 177  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   || |||||||||||||||||    
T  35401358 gtgttggtgtaatattggtgcaccttgtgctatgttgtgtttgtgaaatgtgcatgatcatattcatataataatacacatcaagaaatt 35401269  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 208 - 297
Target Start/End: Complemental strand, 9949090 - 9949001
Alignment:
Q  208 caaggttgtcaaaatcgggatcctactaaagatcgttggagcatagaaagagcgtagatcgtaggatcgtaacaaggatcataagatccc 297  Q
    ||||||| ||||||||| ||||| |||| |||||||||  | ||||||| |||||||||||||||||||||||| ||||| |||||||||    
T  9949090 caaggttatcaaaatcgagatcccactagagatcgttgaggtatagaaaaagcgtagatcgtaggatcgtaacagggatcgtaagatccc 9949001  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 218 - 297
Target Start/End: Original strand, 12141705 - 12141784
Alignment:
Q  218 aaaatcgggatcctactaaagatcgttggagcatagaaagagcgtagatcgtaggatcgtaacaaggatcataagatccc 297  Q
    ||||||||||||| ||||||||||||| ||| ||||||| |||||| || |||||||||||||||| ||||||| |||||    
T  12141705 aaaatcgggatcccactaaagatcgttagagtatagaaaaagcgtacattgtaggatcgtaacaagtatcataacatccc 12141784  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 9584026 - 9583958
Alignment:
Q  211 ggttgtcaaaatcgggatcctactaaagatcgttggagcatagaaagagcgtagatcgtaggatcgtaa 279  Q
    |||||||||||||||||||  ||||||||||||||| | | ||||| |||||||| |||| ||||||||    
T  9584026 ggttgtcaaaatcgggatctcactaaagatcgttggggtacagaaaaagcgtagaccgtaagatcgtaa 9583958  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 16920476 - 16920572
Alignment:
Q  211 ggttgtcaaaatcgggatcctactaaagatcgttggagcatagaaagagcgtagatcgtaggatcgtaacaaggatcataagatcccgcctaatagac 308  Q
    |||||||||||||| ||||| ||||| ||| ||| | | || |||| ||| ||||||||||||| |||||| ||||| ||||||||| || |||||||    
T  16920476 ggttgtcaaaatcgagatcccactaacgattgttcgggtattgaaa-agcatagatcgtaggattgtaacacggatcgtaagatcccaccaaatagac 16920572  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 25302881 - 25302808
Alignment:
Q  206 agcaaggttgtcaaaatcgggatcctactaaagatcgttggagcatagaaagagcgtagatcgtaggatcgtaa 279  Q
    |||| ||||||||||||| |||||| ||||||||  ||||  | |||| || ||||||||||||||||||||||    
T  25302881 agcatggttgtcaaaatccggatcccactaaagactgttgaggtataggaaaagcgtagatcgtaggatcgtaa 25302808  T

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Target: scaffold0361 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 211 - 297
Target Start/End: Original strand, 10146 - 10232
Alignment:
Q  211 ggttgtcaaaatcgggatcctactaaagatcgttggagcatagaaagagcgtagatcgtaggatcgtaacaaggatcataagatccc 297  Q
    |||||||||||||||||||| ||||||||||||||  | ||||||| || ||||||||||||||||||||| |||||||||||||||    
T  10146 ggttgtcaaaatcgggatcccactaaagatcgttgaggtatagaaaaagggtagatcgtaggatcgtaacagggatcataagatccc 10232  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 207 - 279
Target Start/End: Original strand, 13821796 - 13821868
Alignment:
Q  207 gcaaggttgtcaaaatcgggatcctactaaagatcgttggagcatagaaagagcgtagatcgtaggatcgtaa 279  Q
    ||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| ||||||||||||||||||    
T  13821796 gcaaggttgtcaaaatcggtatcctactaaagatcattggggcatagaaagagcctagatcgtaggatcgtaa 13821868  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 413 - 493
Target Start/End: Original strand, 13821946 - 13822026
Alignment:
Q  413 aaataacaacacatcaatttcttaaacatnnnnnnnnctagttcaacaagtcattcaagacattttgatcaagcccaacat 493  Q
    |||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  13821946 aaataacaacacatcaatttcttaaacataaaaaaaactagttcaacaagtcattcaagacattttgatcaagcccaacat 13822026  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 305
Target Start/End: Original strand, 26331542 - 26331633
Alignment:
Q  214 tgtcaaaatcgggatcctactaaagatcgttggagcatagaaagagcgtagatcgtaggatcgtaacaaggatcataagatcccgcctaata 305  Q
    ||||||||||| ||| |  ||||||||| |||||  |||||||||||||| ||  ||||||||||||||||||| ||||||| | |||||||    
T  26331542 tgtcaaaatcgagattcctctaaagatcattggataatagaaagagcgtaaattataggatcgtaacaaggatcgtaagatctcacctaata 26331633  T

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Target: scaffold0098 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 17861 - 17930
Alignment:
Q  211 ggttgtcaaaatcgggatcctactaaagatcgttggagcatagaaaga-gcgtagatcgtaggatcgtaa 279  Q
    |||||| ||||||||||||| |||| ||||| |||| | ||| ||| | |||||||||||||||||||||    
T  17861 ggttgttaaaatcgggatcccactatagatcattggggtataaaaaaaagcgtagatcgtaggatcgtaa 17930  T

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