View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15514_high_13 (Length: 397)

Name: NF15514_high_13
Description: NF15514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15514_high_13
NF15514_high_13
[»] chr4 (11 HSPs)
chr4 (13-302)||(35796398-35796686)
chr4 (340-378)||(573869-573907)
chr4 (340-378)||(1662326-1662364)
chr4 (340-378)||(27580185-27580223)
chr4 (340-378)||(38547668-38547706)
chr4 (344-378)||(27398674-27398708)
chr4 (340-378)||(46720091-46720129)
chr4 (345-378)||(43231568-43231601)
chr4 (340-378)||(27872645-27872683)
chr4 (340-378)||(34835243-34835281)
chr4 (344-378)||(50534697-50534731)
[»] chr7 (12 HSPs)
chr7 (340-378)||(33393395-33393433)
chr7 (340-378)||(47460839-47460877)
chr7 (340-378)||(7257448-7257486)
chr7 (340-378)||(15644013-15644051)
chr7 (340-378)||(16482850-16482888)
chr7 (340-378)||(37443669-37443707)
chr7 (340-378)||(44003437-44003475)
chr7 (344-375)||(10028558-10028589)
chr7 (344-378)||(5712235-5712269)
chr7 (344-378)||(31586915-31586949)
chr7 (340-378)||(38448515-38448553)
chr7 (344-378)||(40670630-40670664)
[»] chr5 (9 HSPs)
chr5 (340-378)||(24167851-24167889)
chr5 (340-378)||(27390663-27390701)
chr5 (340-378)||(2585528-2585566)
chr5 (340-378)||(18327240-18327278)
chr5 (344-378)||(36472355-36472389)
chr5 (340-378)||(38637977-38638015)
chr5 (343-378)||(1402575-1402610)
chr5 (344-378)||(13504824-13504858)
chr5 (340-378)||(40686965-40687003)
[»] chr3 (18 HSPs)
chr3 (340-378)||(25353620-25353658)
chr3 (340-378)||(30251568-30251606)
chr3 (340-378)||(42998856-42998894)
chr3 (340-378)||(55380051-55380089)
chr3 (340-378)||(28576179-28576217)
chr3 (340-378)||(40165717-40165755)
chr3 (340-378)||(41882058-41882096)
chr3 (340-378)||(51143883-51143921)
chr3 (344-378)||(53115513-53115547)
chr3 (340-372)||(52434251-52434283)
chr3 (344-375)||(47182069-47182100)
chr3 (344-375)||(51452832-51452863)
chr3 (340-378)||(21597215-21597253)
chr3 (344-378)||(43125897-43125931)
chr3 (340-378)||(43176805-43176843)
chr3 (344-378)||(51146297-51146331)
chr3 (344-378)||(55453326-55453360)
chr3 (335-375)||(32234470-32234510)
[»] chr2 (5 HSPs)
chr2 (340-378)||(35126845-35126883)
chr2 (340-378)||(44481893-44481931)
chr2 (344-375)||(40735532-40735563)
chr2 (344-378)||(15925145-15925179)
chr2 (344-378)||(27024480-27024514)
[»] chr1 (17 HSPs)
chr1 (340-378)||(10920266-10920304)
chr1 (340-378)||(31286571-31286609)
chr1 (340-378)||(1388539-1388577)
chr1 (340-378)||(5961334-5961372)
chr1 (340-378)||(26685922-26685960)
chr1 (340-378)||(27924725-27924763)
chr1 (340-378)||(38716314-38716352)
chr1 (340-378)||(48683397-48683435)
chr1 (340-378)||(52367949-52367987)
chr1 (344-375)||(38790279-38790310)
chr1 (344-375)||(47187174-47187205)
chr1 (344-375)||(49254057-49254088)
chr1 (344-378)||(2954921-2954955)
chr1 (340-378)||(39475850-39475887)
chr1 (344-378)||(45475924-45475958)
chr1 (344-378)||(48373570-48373604)
chr1 (340-378)||(52324004-52324042)
[»] scaffold0150 (1 HSPs)
scaffold0150 (340-378)||(14810-14848)
[»] scaffold0125 (1 HSPs)
scaffold0125 (340-378)||(20544-20582)
[»] chr8 (8 HSPs)
chr8 (340-378)||(26196384-26196422)
chr8 (340-378)||(33896910-33896948)
chr8 (340-378)||(3490466-3490504)
chr8 (344-378)||(5946113-5946147)
chr8 (344-378)||(39915894-39915928)
chr8 (344-378)||(45236647-45236681)
chr8 (344-381)||(41981531-41981568)
chr8 (335-375)||(2275982-2276022)
[»] chr6 (4 HSPs)
chr6 (340-378)||(7167648-7167686)
chr6 (344-375)||(16703435-16703466)
chr6 (340-378)||(34262296-34262334)
chr6 (346-378)||(375797-375829)
[»] scaffold2003 (1 HSPs)
scaffold2003 (340-378)||(168-206)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 302
Target Start/End: Original strand, 35796398 - 35796686
Alignment:
Q  13 aaaattaagcggtaattggatacaaattaatatctttttaaaaactcttgtttgcccnnnnnnnaagaagctcttgtttaccctttaattatatcattac 112  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  35796398 aaaattacgcggtaattgaatacaaattaatatctttttaaaaactcttgtttgccctttttttaagaagctcttgtttaccctttaattatatcattac 35796497  T
Q  113 attcctcttcatataaaagcaagggaaatgtaaaaaatttcaaacttcaaatttatttattttgttaaggtttacgagtgttcttcaacaagggctcgga 212  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  35796498 attcctcttcatataa--gcaagggaaatgtaaaaaatttcaaacttcaaatttatttattttgttaaggtttacgagtgttcttcaacaaggactcgca 35796595  T
Q  213 tattaatcttgatatttacttaaagagattttc-ttggagaaggatgagaaattaatattgttattatagctgccatgatatttgaatcat 302  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35796596 tattaatcttgatatttacttaaagagattttctttggagaaggatgagaaattaatattgttattatagctgccatgatatttgaatcat 35796686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 573907 - 573869
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||||||||||||||||||||    
T  573907 ttaggtggtatccataaactatcttgaccccaccaataa 573869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 1662326 - 1662364
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1662326 ttaggtggtatccataaactatcttgaccccaccaataa 1662364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 27580223 - 27580185
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27580223 ttaggtggtatccataaactatcttgaccccaccaataa 27580185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 38547668 - 38547706
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38547668 ttaggtggtatccataaactatcttgaccccaccaataa 38547706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 344 - 378
Target Start/End: Original strand, 27398674 - 27398708
Alignment:
Q  344 gtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||||||||||||||||    
T  27398674 gtggtatccataaactatcttgaccccaccaataa 27398708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 46720129 - 46720091
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  46720129 ttaggtggtatccataaactatcttgaccccatcaataa 46720091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 378
Target Start/End: Complemental strand, 43231601 - 43231568
Alignment:
Q  345 tggtatccataaactatcttgaccccaccaataa 378  Q
    ||||||||||||||||||||||||||||||||||    
T  43231601 tggtatccataaactatcttgaccccaccaataa 43231568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 27872683 - 27872645
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  27872683 ttaggtggtatccataaactatcttgatcccactaataa 27872645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 34835281 - 34835243
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  34835281 ttagatggtattcataaactatcttgaccccaccaataa 34835243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 378
Target Start/End: Complemental strand, 50534731 - 50534697
Alignment:
Q  344 gtggtatccataaactatcttgaccccaccaataa 378  Q
    ||||||||||| |||||||||||||||||||||||    
T  50534731 gtggtatccatgaactatcttgaccccaccaataa 50534697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 33393433 - 33393395
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33393433 ttaggtggtatccataaactatcttgaccccaccaataa 33393395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 47460839 - 47460877
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||||||||||||||||||||    
T  47460839 ttaggtggtatccataaactatcttgaccccaccaataa 47460877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 7257486 - 7257448
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  7257486 ttaggtggtattcataaactatcttgaccccaccaataa 7257448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 15644013 - 15644051
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  15644013 ttaggtggtatccataaactattttgaccccaccaataa 15644051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 16482850 - 16482888
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  16482850 ttaggtggtatccataaaccatcttgaccccaccaataa 16482888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 37443669 - 37443707
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  37443669 ttaggtggtatctataaactatcttgaccccaccaataa 37443707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 44003437 - 44003475
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  44003437 ttaggtggtatccataaactatcttgactccaccaataa 44003475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 375
Target Start/End: Complemental strand, 10028589 - 10028558
Alignment:
Q  344 gtggtatccataaactatcttgaccccaccaa 375  Q
    ||||||||||||||||||||||||||||||||    
T  10028589 gtggtatccataaactatcttgaccccaccaa 10028558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 378
Target Start/End: Complemental strand, 5712269 - 5712235
Alignment:
Q  344 gtggtatccataaactatcttgaccccaccaataa 378  Q
    ||||||||||||||||||||||||||||| |||||    
T  5712269 gtggtatccataaactatcttgaccccactaataa 5712235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 378
Target Start/End: Complemental strand, 31586949 - 31586915
Alignment:
Q  344 gtggtatccataaactatcttgaccccaccaataa 378  Q
    ||||||||||| |||||||||||||||||||||||    
T  31586949 gtggtatccatgaactatcttgaccccaccaataa 31586915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 38448515 - 38448553
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  38448515 ttaggtgatattcataaactatcttgaccccaccaataa 38448553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 378
Target Start/End: Complemental strand, 40670664 - 40670630
Alignment:
Q  344 gtggtatccataaactatcttgaccccaccaataa 378  Q
    ||||||||||| |||||||||||||||||||||||    
T  40670664 gtggtatccatgaactatcttgaccccaccaataa 40670630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 24167851 - 24167889
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24167851 ttaggtggtatccataaactatcttgaccccaccaataa 24167889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 27390701 - 27390663
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27390701 ttaggtggtatccataaactatcttgaccccaccaataa 27390663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 2585566 - 2585528
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  2585566 ttagatggtatccataaactatcttgaccccaccaataa 2585528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 18327240 - 18327278
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  18327240 ttaggtggtatccataaactatcttgactccaccaataa 18327278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 344 - 378
Target Start/End: Original strand, 36472355 - 36472389
Alignment:
Q  344 gtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||||||||||||||||    
T  36472355 gtggtatccataaactatcttgaccccaccaataa 36472389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 38637977 - 38638015
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  38637977 ttagttggtatccataaactatcttgaccccaccaataa 38638015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 378
Target Start/End: Original strand, 1402575 - 1402610
Alignment:
Q  343 ggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||||| |||||||||||    
T  1402575 ggtggtatccataaactatcttgatcccaccaataa 1402610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 378
Target Start/End: Original strand, 13504824 - 13504858
Alignment:
Q  344 gtggtatccataaactatcttgaccccaccaataa 378  Q
    ||||||||||| |||||||||||||||||||||||    
T  13504824 gtggtatccatgaactatcttgaccccaccaataa 13504858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 40687003 - 40686965
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  40687003 ttagatggtattcataaactatcttgaccccaccaataa 40686965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 25353658 - 25353620
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25353658 ttaggtggtatccataaactatcttgaccccaccaataa 25353620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 30251568 - 30251606
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30251568 ttaggtggtatccataaactatcttgaccccaccaataa 30251606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 42998856 - 42998894
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42998856 ttaggtggtatccataaactatcttgaccccaccaataa 42998894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 55380089 - 55380051
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||||||||||||||||||||    
T  55380089 ttaggtggtatccataaactatcttgaccccaccaataa 55380051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 28576179 - 28576217
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  28576179 ttagatggtatccataaactatcttgaccccaccaataa 28576217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 40165755 - 40165717
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  40165755 ttaggtggtatccataaactatcttgactccaccaataa 40165717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 41882058 - 41882096
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  41882058 ttagatggtatccataaactatcttgaccccaccaataa 41882096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 51143921 - 51143883
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  51143921 ttaggtggtatccataaactatattgaccccaccaataa 51143883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 344 - 378
Target Start/End: Complemental strand, 53115547 - 53115513
Alignment:
Q  344 gtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||||||||||||||||    
T  53115547 gtggtatccataaactatcttgaccccaccaataa 53115513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 372
Target Start/End: Complemental strand, 52434283 - 52434251
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccac 372  Q
    |||||||||||||||||||||||||||||||||    
T  52434283 ttaggtggtatccataaactatcttgaccccac 52434251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 375
Target Start/End: Complemental strand, 47182100 - 47182069
Alignment:
Q  344 gtggtatccataaactatcttgaccccaccaa 375  Q
    ||||||||||||||||||||||||||||||||    
T  47182100 gtggtatccataaactatcttgaccccaccaa 47182069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 375
Target Start/End: Original strand, 51452832 - 51452863
Alignment:
Q  344 gtggtatccataaactatcttgaccccaccaa 375  Q
    ||||||||||||||||||||||||||||||||    
T  51452832 gtggtatccataaactatcttgaccccaccaa 51452863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 21597215 - 21597253
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  21597215 ttagttggtatccataaactatcttgatcccaccaataa 21597253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 378
Target Start/End: Complemental strand, 43125931 - 43125897
Alignment:
Q  344 gtggtatccataaactatcttgaccccaccaataa 378  Q
    ||||||||||| |||||||||||||||||||||||    
T  43125931 gtggtatccatgaactatcttgaccccaccaataa 43125897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 43176805 - 43176843
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  43176805 ttaggtggtatccataaactatcttgacatcaccaataa 43176843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 378
Target Start/End: Original strand, 51146297 - 51146331
Alignment:
Q  344 gtggtatccataaactatcttgaccccaccaataa 378  Q
    ||||||||||| |||||||||||||||||||||||    
T  51146297 gtggtatccatgaactatcttgaccccaccaataa 51146331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 378
Target Start/End: Original strand, 55453326 - 55453360
Alignment:
Q  344 gtggtatccataaactatcttgaccccaccaataa 378  Q
    ||||||||||| |||||||||||||||||||||||    
T  55453326 gtggtatccatgaactatcttgaccccaccaataa 55453360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 375
Target Start/End: Original strand, 32234470 - 32234510
Alignment:
Q  335 atatgttaggtggtatccataaactatcttgaccccaccaa 375  Q
    |||| ||| ||||||||||| ||||||||||||||||||||    
T  32234470 atattttaagtggtatccatgaactatcttgaccccaccaa 32234510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 35126883 - 35126845
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35126883 ttaggtggtatccataaactatcttgaccccaccaataa 35126845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 44481931 - 44481893
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||||||||||||||||||||    
T  44481931 ttaggtggtatccataaactatcttgaccccaccaataa 44481893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 375
Target Start/End: Complemental strand, 40735563 - 40735532
Alignment:
Q  344 gtggtatccataaactatcttgaccccaccaa 375  Q
    ||||||||||||||||||||||||||||||||    
T  40735563 gtggtatccataaactatcttgaccccaccaa 40735532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 378
Target Start/End: Complemental strand, 15925179 - 15925145
Alignment:
Q  344 gtggtatccataaactatcttgaccccaccaataa 378  Q
    ||||||||||| |||||||||||||||||||||||    
T  15925179 gtggtatccatgaactatcttgaccccaccaataa 15925145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 378
Target Start/End: Complemental strand, 27024514 - 27024480
Alignment:
Q  344 gtggtatccataaactatcttgaccccaccaataa 378  Q
    ||||||||||| |||||||||||||||||||||||    
T  27024514 gtggtatccatgaactatcttgaccccaccaataa 27024480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 10920304 - 10920266
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10920304 ttaggtggtatccataaactatcttgaccccaccaataa 10920266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 31286571 - 31286609
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31286571 ttaggtggtatccataaactatcttgaccccaccaataa 31286609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 1388577 - 1388539
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  1388577 ttaggtggtatccataaactatcttgaccctaccaataa 1388539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 5961334 - 5961372
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  5961334 ttaggtggtatccataaactatcttgatcccaccaataa 5961372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 26685960 - 26685922
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  26685960 ttaggtggtatccataaactatcttgaccctaccaataa 26685922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 27924725 - 27924763
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  27924725 ttaggtggtatccataaactatcttgatcccaccaataa 27924763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 38716314 - 38716352
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  38716314 ttaggtggtatccataaattatcttgaccccaccaataa 38716352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 48683397 - 48683435
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  48683397 ttaggtggtatccataaactatcttgactccaccaataa 48683435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 52367987 - 52367949
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  52367987 ttaggtggtatccataaactatcttgaccctaccaataa 52367949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 375
Target Start/End: Original strand, 38790279 - 38790310
Alignment:
Q  344 gtggtatccataaactatcttgaccccaccaa 375  Q
    ||||||||||||||||||||||||||||||||    
T  38790279 gtggtatccataaactatcttgaccccaccaa 38790310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 375
Target Start/End: Complemental strand, 47187205 - 47187174
Alignment:
Q  344 gtggtatccataaactatcttgaccccaccaa 375  Q
    ||||||||||||||||||||||||||||||||    
T  47187205 gtggtatccataaactatcttgaccccaccaa 47187174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 375
Target Start/End: Original strand, 49254057 - 49254088
Alignment:
Q  344 gtggtatccataaactatcttgaccccaccaa 375  Q
    ||||||||||||||||||||||||||||||||    
T  49254057 gtggtatccataaactatcttgaccccaccaa 49254088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 378
Target Start/End: Complemental strand, 2954955 - 2954921
Alignment:
Q  344 gtggtatccataaactatcttgaccccaccaataa 378  Q
    ||||||||||| |||||||||||||||||||||||    
T  2954955 gtggtatccattaactatcttgaccccaccaataa 2954921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 39475850 - 39475887
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  39475850 ttaggtggtatccataaactatcttga-cccaccaataa 39475887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 378
Target Start/End: Original strand, 45475924 - 45475958
Alignment:
Q  344 gtggtatccataaactatcttgaccccaccaataa 378  Q
    ||||||||||| |||||||||||||||||||||||    
T  45475924 gtggtatccatcaactatcttgaccccaccaataa 45475958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 378
Target Start/End: Complemental strand, 48373604 - 48373570
Alignment:
Q  344 gtggtatccataaactatcttgaccccaccaataa 378  Q
    ||||||||||| |||||||||||||||||||||||    
T  48373604 gtggtatccatgaactatcttgaccccaccaataa 48373570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 52324042 - 52324004
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  52324042 ttaggtggtattcataaattatcttgaccccaccaataa 52324004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 14848 - 14810
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  14848 ttaggtggtattcataaactatcttgaccccaccaataa 14810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 20544 - 20582
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  20544 ttaggtggtatccataaattatcttgaccccaccaataa 20582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 26196384 - 26196422
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  26196384 ttaggtggtatccataaactattttgaccccaccaataa 26196422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 33896910 - 33896948
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  33896910 ttaggtggtatctataaactatcttgaccccaccaataa 33896948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 3490466 - 3490504
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  3490466 ttaggtggtaaccataaattatcttgaccccaccaataa 3490504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 378
Target Start/End: Complemental strand, 5946147 - 5946113
Alignment:
Q  344 gtggtatccataaactatcttgaccccaccaataa 378  Q
    ||||||||||| |||||||||||||||||||||||    
T  5946147 gtggtatccatgaactatcttgaccccaccaataa 5946113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 378
Target Start/End: Original strand, 39915894 - 39915928
Alignment:
Q  344 gtggtatccataaactatcttgaccccaccaataa 378  Q
    ||||||||||| |||||||||||||||||||||||    
T  39915894 gtggtatccatgaactatcttgaccccaccaataa 39915928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 378
Target Start/End: Original strand, 45236647 - 45236681
Alignment:
Q  344 gtggtatccataaactatcttgaccccaccaataa 378  Q
    ||||||||||| |||||||||||||||||||||||    
T  45236647 gtggtatccatgaactatcttgaccccaccaataa 45236681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 381
Target Start/End: Complemental strand, 41981568 - 41981531
Alignment:
Q  344 gtggtatccataaactatcttgaccccaccaataagtg 381  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  41981568 gtggtatccatgaactatcttgaccccaccaacaagtg 41981531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 375
Target Start/End: Complemental strand, 2276022 - 2275982
Alignment:
Q  335 atatgttaggtggtatccataaactatcttgaccccaccaa 375  Q
    |||| ||| ||||||||||| ||||||||||||||||||||    
T  2276022 atattttaagtggtatccatgaactatcttgaccccaccaa 2275982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 7167686 - 7167648
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  7167686 ttaggtggtatccataaactatcttgaccccactaataa 7167648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 375
Target Start/End: Complemental strand, 16703466 - 16703435
Alignment:
Q  344 gtggtatccataaactatcttgaccccaccaa 375  Q
    ||||||||||||||||||||||||||||||||    
T  16703466 gtggtatccataaactatcttgaccccaccaa 16703435  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 34262334 - 34262296
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  34262334 ttagatggtatccataaactatgttgaccccaccaataa 34262296  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 346 - 378
Target Start/End: Original strand, 375797 - 375829
Alignment:
Q  346 ggtatccataaactatcttgaccccaccaataa 378  Q
    ||||| |||||||||||||||||||||||||||    
T  375797 ggtattcataaactatcttgaccccaccaataa 375829  T

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Target: scaffold2003 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold2003
Description:

Target: scaffold2003; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 206 - 168
Alignment:
Q  340 ttaggtggtatccataaactatcttgaccccaccaataa 378  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  206 ttaggtggtattcataaactatcttgactccaccaataa 168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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