View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15514_high_15 (Length: 380)
Name: NF15514_high_15
Description: NF15514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15514_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 11 - 290
Target Start/End: Complemental strand, 43233445 - 43233167
Alignment:
| Q |
11 |
gagagaagaaaaataaacttataccgtagacttcaagtcaacctaaaatgaatttgaaatggttgtaggtaaaataacttgcaggggtgacaaaattaca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43233445 |
gagagaagaaaaataaacttataccgtagacttcaagtcaacctaaaatgaatttgaaatggttgtaggtaaaataacttgcaggggtgacaaaattaca |
43233346 |
T |
|
| Q |
111 |
attgaaagaaatacatttgatttgaaacatatgagtaaacaaaattggtaatcctctatgtatt---gctgatattggacacctaaacaaacttgcatcc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43233345 |
attgaaagaaatacatttgatttgaaacatatgagtaaacaaaattggtaatcctctatgtattgctgctgatattggacacctaaacaaacttgcatcc |
43233246 |
T |
|
| Q |
208 |
caaatttaatttgaaagggtgacactgccaacttttcccactccttatactttgctctatttgaatcattgttttctccaaca |
290 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43233245 |
gaaat----tttgaaagggtgacactgccaacttttcccactccttatactttgctctatttgaatcattgttttctccaaca |
43233167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 31982640 - 31982589
Alignment:
| Q |
220 |
gaaagggtgacactgccaacttttcccactccttatactttgctctatttga |
271 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||| || |||||||||| |
|
|
| T |
31982640 |
gaaagggtgacactgcctacttttcccactctttatacgttactctatttga |
31982589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 31982982 - 31982922
Alignment:
| Q |
87 |
acttgcaggggtgacaaaattacaattgaaagaaatacatttgatttgaaacatatgagta |
147 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||| ||||| |||| |||| |||||||| |
|
|
| T |
31982982 |
acttgcaggtgtgacaaagttacaattgaaagaaaaacattagattcaaaacgtatgagta |
31982922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 11 - 147
Target Start/End: Complemental strand, 8024397 - 8024261
Alignment:
| Q |
11 |
gagagaagaaaaataaacttataccgtagacttcaagtcaacctaaaatgaatttgaaatggttgtaggtaaaataacttgcaggggtgacaaaattaca |
110 |
Q |
| |
|
|||||||||||||||||||| || | |||||||||||||||||| ||||||||| ||| |||||||||||||| |||||||||| | |||||| |||| |
|
|
| T |
8024397 |
gagagaagaaaaataaacttgtagcatagacttcaagtcaacctgaaatgaattcaaaaaggttgtaggtaaaaaaacttgcaggtgggacaaagttacc |
8024298 |
T |
|
| Q |
111 |
attgaaagaaatacatttgatttgaaacatatgagta |
147 |
Q |
| |
|
||||||||||| ||||| |||| |||| |||||||| |
|
|
| T |
8024297 |
attgaaagaaaaacattagattcaaaacgtatgagta |
8024261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 8023595 - 8023544
Alignment:
| Q |
220 |
gaaagggtgacactgccaacttttcccactccttatactttgctctatttga |
271 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||| || |||||||||| |
|
|
| T |
8023595 |
gaaagggtgacactgcctacttttcccactctttatacgttactctatttga |
8023544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 147
Target Start/End: Complemental strand, 18647620 - 18647484
Alignment:
| Q |
11 |
gagagaagaaaaataaacttataccgtagacttcaagtcaacctaaaatgaatttgaaatggttgtaggtaaaataacttgcaggggtgacaaaattaca |
110 |
Q |
| |
|
|||||||||||||||||||| || | |||||||||||||||||| ||||||||| ||| |||||||||||||| |||||||||| | |||||| |||| |
|
|
| T |
18647620 |
gagagaagaaaaataaacttgtagcatagacttcaagtcaacctgaaatgaattcaaaaaggttgtaggtaaaaaaacttgcaggtgggacaaagttacc |
18647521 |
T |
|
| Q |
111 |
attgaaagaaatacatttgatttgaaacatatgagta |
147 |
Q |
| |
|
||||||||||| |||| |||| |||| |||||||| |
|
|
| T |
18647520 |
attgaaagaaaatcattagattcaaaacgtatgagta |
18647484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 18646821 - 18646770
Alignment:
| Q |
220 |
gaaagggtgacactgccaacttttcccactccttatactttgctctatttga |
271 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||| || |||||||||| |
|
|
| T |
18646821 |
gaaagggtgacactgcctacttttcccactctttatacgttactctatttga |
18646770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University