View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15514_high_16 (Length: 355)

Name: NF15514_high_16
Description: NF15514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15514_high_16
NF15514_high_16
[»] scaffold0063 (1 HSPs)
scaffold0063 (18-355)||(50284-50635)
[»] scaffold0351 (2 HSPs)
scaffold0351 (18-150)||(18132-18265)
scaffold0351 (18-84)||(7999-8065)
[»] scaffold1364 (1 HSPs)
scaffold1364 (37-150)||(1613-1727)
[»] chr5 (2 HSPs)
chr5 (188-276)||(16908044-16908131)
chr5 (281-355)||(16907933-16908007)
[»] scaffold0263 (2 HSPs)
scaffold0263 (31-142)||(17876-17985)
scaffold0263 (18-63)||(17987-18032)
[»] scaffold0002 (3 HSPs)
scaffold0002 (18-84)||(113567-113633)
scaffold0002 (67-145)||(451635-451714)
scaffold0002 (65-150)||(96871-96957)
[»] scaffold0085 (2 HSPs)
scaffold0085 (217-283)||(45127-45193)
scaffold0085 (281-355)||(45025-45099)
[»] chr8 (2 HSPs)
chr8 (18-122)||(6294915-6295026)
chr8 (63-145)||(6281479-6281566)
[»] scaffold1266 (1 HSPs)
scaffold1266 (95-150)||(2054-2109)
[»] chr7 (1 HSPs)
chr7 (231-283)||(33784948-33785000)


Alignment Details
Target: scaffold0063 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 50284 - 50635
Alignment:
Q  18 aaatttgcactccaattctatgatatgttcatttttcgtgactgtccaatattcattcatgctaacttatgccatcattcactataaattttcactcaac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50284 aaatttgcactccaattctatgatatgttcatttttcgtgactgtccaatattcattcatgctaacttatgccatcattcactataaattttcactcaac 50383  T
Q  118 tactcgctaccttgccaaccaacacctccatgtgc--------------attttcccatagtgtgaacggggagaccagcggaaggatgcacgttgtcac 203  Q
    |||||| ||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  50384 tactcggtaccttgccaaccaacacctccatgtgcttgtatgaaaatgtattttcccatagtgtgaacggggagaccaagggaaggatgcacgttgtcac 50483  T
Q  204 ttgtgcatgctttgtgcccccactttgtttttgattttctcggtacccttactattcatggttctccaccaatagtccaatagtgtatagtatcacacta 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50484 ttgtgcatgctttgtgcccccactttgtttttgattttctcggtacccttactattcatggttctccaccaatagtccaatagtgtatagtatcacacta 50583  T
Q  304 aaactaccattttatacccaaaaaattactaataatatatgtatgctatatt 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50584 aaactaccattttatacccaaaaaattactaataatatatgtatgctatatt 50635  T

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Target: scaffold0351 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 18265 - 18132
Alignment:
Q  18 aaatttgcactccaattctatgatatgttcatttttcgtgactgtccaatattcattcatgctaact-tatgccatcattcactataaattttcactcaa 116  Q
    |||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||      
T  18265 aaatttgcactccaattctatgatatgttcatctttcatgattgtccaatattcattcatgctaactgtatgccatcattcactataaattttcactcgg 18166  T
Q  117 ctactcgctaccttgccaaccaacacctccatgt 150  Q
    ||||||| ||| |||||||||||||| |||||||    
T  18165 ctactcggtacgttgccaaccaacacttccatgt 18132  T

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Target: scaffold0351; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 8065 - 7999
Alignment:
Q  18 aaatttgcactccaattctatgatatgttcatttttcgtgactgtccaatattcattcatgctaact 84  Q
    |||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||    
T  8065 aaatttgcactccaattctatgatatgttcatctttcatgattgtccaatattcattcatgctaact 7999  T

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Target: scaffold1364 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold1364
Description:

Target: scaffold1364; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 37 - 150
Target Start/End: Original strand, 1613 - 1727
Alignment:
Q  37 atgatatgttcatttttcgtgactgtccaatattcattcatgctaact-tatgccatcattcactataaattttcactcaactactcgctaccttgccaa 135  Q
    ||||||||||||| |||| ||| ||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||| |||||||||||    
T  1613 atgatatgttcatctttcatgattgtccaatattcattcatgctaactgtatgccatcatccacaataaattttcactcaactactcggtaccttgccaa 1712  T
Q  136 ccaacacctccatgt 150  Q
    |||||||||||||||    
T  1713 ccaacacctccatgt 1727  T

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Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 188 - 276
Target Start/End: Complemental strand, 16908131 - 16908044
Alignment:
Q  188 ggatgcacgttgtcacttgtgcatgctttgtgcccccactttgtttttgattttctcggtacccttactattcatggttctccaccaat 276  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  16908131 ggatgcacgttgtcacttgtgcaagctt-gtgcccccactttgttttttattttctcggcacccttactattcatggttctccaccaat 16908044  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 281 - 355
Target Start/End: Complemental strand, 16908007 - 16907933
Alignment:
Q  281 caatagtgtatagtatcacactaaaactaccattttatacccaaaaaattactaataatatatgtatgctatatt 355  Q
    |||||||||||| ||||| |||||||||| |||||||||||| ||||||||||||||||||||| | ||||||||    
T  16908007 caatagtgtataatatcagactaaaactaacattttatacccgaaaaattactaataatatatgcacgctatatt 16907933  T

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Target: scaffold0263 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 142
Target Start/End: Complemental strand, 17985 - 17876
Alignment:
Q  31 aattctatgatatgttcatttttcgtgactgtccaatattcattcatgctaact-tatgccatcattcactataaattttcactcaactactcgctacct 129  Q
    |||| |||||||||||||| |||   || ||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||| | ||| | |||||    
T  17985 aattatatgatatgttcatcttt---gattgttcaatattcattcatgctaactgtatgccatcattcattataaattttcactcagcaacttggtacct 17889  T
Q  130 tgccaaccaacac 142  Q
    |||||||||||||    
T  17888 tgccaaccaacac 17876  T

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Target: scaffold0263; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 18032 - 17987
Alignment:
Q  18 aaatttgcactccaattctatgatatgttcatttttcgtgactgtc 63  Q
    |||||||||||||||||||||||||||| ||| |||| ||| ||||    
T  18032 aaatttgcactccaattctatgatatgtccatctttcatgattgtc 17987  T

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Target: scaffold0002 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 113567 - 113633
Alignment:
Q  18 aaatttgcactccaattctatgatatgttcatttttcgtgactgtccaatattcattcatgctaact 84  Q
    |||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||    
T  113567 aaatttgcactccaattctatgatatgttcatctttcatgattgtccaatattcattcatgctaact 113633  T

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Target: scaffold0002; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 67 - 145
Target Start/End: Complemental strand, 451714 - 451635
Alignment:
Q  67 tattcattcatgctaact-tatgccatcattcactataaattttcactcaactactcgctaccttgccaaccaacacctc 145  Q
    |||||||||||||||||| | |||||||||||||| |||||||||||||||||||| | |||||||||||| ||||||||    
T  451714 tattcattcatgctaactgtttgccatcattcactttaaattttcactcaactacttggtaccttgccaacaaacacctc 451635  T

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Target: scaffold0002; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 96957 - 96871
Alignment:
Q  65 aatattcattcatgctaact-tatgccatcattcactataaattttcactcaactactcgctaccttgccaaccaacacctccatgt 150  Q
    ||||||||||||  |||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||| ||| |||||    
T  96957 aatattcattcaaactaactgtatgccatcattcactataaattttcactcagctactcggtaccttgccagccaacgcctacatgt 96871  T

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Target: scaffold0085 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 45193 - 45127
Alignment:
Q  217 gtgcccccactttgtttttgattttctcggtacccttactattcatggttctccaccaatagtccaa 283  Q
    ||||||||||||||||| ||||||||| |||||| || |||||||||||||| |||||| |||||||    
T  45193 gtgcccccactttgtttctgattttcttggtacctttgctattcatggttcttcaccaacagtccaa 45127  T

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Target: scaffold0085; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 355
Target Start/End: Complemental strand, 45099 - 45025
Alignment:
Q  281 caatagtgtatagtatcacactaaaactaccattttatacccaa-aaaattactaataatatatgtatgctatatt 355  Q
    ||||||||||||||||| ||||||||||| ||| || |||| || |||||||||  ||||||||| ||||||||||    
T  45099 caatagtgtatagtatctcactaaaactaacatcttgtaccaaacaaaattact-gtaatatatgcatgctatatt 45025  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 6294915 - 6295026
Alignment:
Q  18 aaatttgcactccaattctatgata--tgttcatttttcgtgactgtccaatattcattcatgctaact---tatgccatcattcac--tataaattttc 110  Q
    |||||||||||||||||||||||||  || |||| |||| | |  | |||||||||||||||| |||||   |||| ||||||||||  |||||||||||    
T  6294915 aaatttgcactccaattctatgataaatgctcatctttcataatcgaccaatattcattcatgttaactgtatatgtcatcattcacattataaattttc 6295014  T
Q  111 actcaactactc 122  Q
    ||||||||||||    
T  6295015 actcaactactc 6295026  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 6281479 - 6281566
Alignment:
Q  63 ccaatattcattcatgctaact---tatgccatcattcac--tataaattttcactcaactactcgctaccttgccaaccaacacctc 145  Q
    |||||||||||||||| |||||   |||||||||||||||  ||||||||| |||||||| ||||  |||||||||| ||||||||||    
T  6281479 ccaatattcattcatgttaactgtatatgccatcattcactttataaatttccactcaacgactccgtaccttgccagccaacacctc 6281566  T

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Target: scaffold1266 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 150
Target Start/End: Original strand, 2054 - 2109
Alignment:
Q  95 ttcactataaattttcactcaactactcgctaccttgccaaccaacacctccatgt 150  Q
    ||||||||||||||||||||| ||||||  |||||||||| ||||| ||| |||||    
T  2054 ttcactataaattttcactcagctactcaataccttgccagccaacgcctacatgt 2109  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 33785000 - 33784948
Alignment:
Q  231 tttttgattttctcggtacccttactattcatggttctccaccaatagtccaa 283  Q
    |||||| |||||| | ||||||| |||||||| |||||||||||| |||||||    
T  33785000 tttttgcttttcttgatacccttcctattcattgttctccaccaacagtccaa 33784948  T

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