View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15514_high_17 (Length: 349)
Name: NF15514_high_17
Description: NF15514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15514_high_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 11 - 349
Target Start/End: Complemental strand, 36139954 - 36139616
Alignment:
| Q |
11 |
cacagatgcaagacaaactgcagaagttgatcccataaactgaaaaatgaaccaaatatctggaattgcaacagcagcaatgtaactaaaaaccaacagc |
110 |
Q |
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| T |
36139954 |
cacaaatgcaagacaaactgcagaagttgatcccataaactgaaaaatgaaccaaatatctggaattgcaacagcagcaatgtaactaaaaaccaacagc |
36139855 |
T |
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| Q |
111 |
accaaagtgaggaacacaaatctcttgttatctgtggctaacaaaggttttttagggaagaagaattcatcaatattggttctcaaagagaaattgagaa |
210 |
Q |
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| T |
36139854 |
accaaagtgaggaacacaaatctcttgttatctgtggctaacaaaggttttttagggaagaagaattcatcaatattggttctcaaagagaaattgagaa |
36139755 |
T |
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| Q |
211 |
gaggaaatgctagcataacatgaaaagcatagcttaaacggaccaaagtattgagcaatgaaccaaatgaagaatcagcattgtggtcaaaatttattag |
310 |
Q |
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| T |
36139754 |
gaggaaatgctagcataacatgaaaagcatagcttaaacggaccaaagtattgagcaatgaaccaaatgaagaatcagcattgtggtcaaaatttattag |
36139655 |
T |
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| Q |
311 |
aatgtctgattgagttgaatcaccaaataataggtaacc |
349 |
Q |
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| T |
36139654 |
aatgtctgattgagttgcatcaccaaataataggtaacc |
36139616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 125 - 346
Target Start/End: Complemental strand, 32396537 - 32396316
Alignment:
| Q |
125 |
cacaaatctcttgttatctgtggctaacaaaggttttttagggaagaagaattcatcaatattggttctcaaagagaaattgagaagaggaaatgctagc |
224 |
Q |
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| T |
32396537 |
cacaaatctcttgttgtctgtggctagcagaggcttcttagggaataggagttcatcgatgttggctcttaaagagaaatttataagagggaataccaac |
32396438 |
T |
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| Q |
225 |
ataacatgaaaagcatagcttaaacggaccaaagtattgagcaatgaaccaaatgaagaatcagcattgtggtcaaaatttattagaatgtctgattgag |
324 |
Q |
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| T |
32396437 |
ataatgtggagtgcgtagcttacacgtattaaactattgaacaaggaaccaacagcagaatcagcattctgatcaaaattgattagaatgtctgattgtg |
32396338 |
T |
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| Q |
325 |
ttgaatcaccaaataataggta |
346 |
Q |
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| T |
32396337 |
ttgaatctccaaacaaaaggta |
32396316 |
T |
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