View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15514_high_18 (Length: 330)
Name: NF15514_high_18
Description: NF15514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15514_high_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 13 - 310
Target Start/End: Original strand, 46238448 - 46238745
Alignment:
| Q |
13 |
gaaatgaaggtgacgcggaaagaaggagagaagacgaacgaagttgcgaagaagatgcatgaaacgatcgaaggacaatcgacggttatgaaaaacgttg |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46238448 |
gaaacgaaggtgacgcggaaagaaggagagaagacgaacgaagttgcgaagaagatgcatgaaacgatcgaaggacaatcgacggttatgaaaaacgttg |
46238547 |
T |
|
| Q |
113 |
gagctccagttgctgatgtaagttgtctattatgtgaatccctttactttcctccctttactcctatgaatatgcatgctatttctttgtttattcttgt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46238548 |
gagctccagttgctgatgtaagttgtctattatgtgaatccctttactttcctctgtttactcctatgaatatgcatgctatttctttgtttattcttgt |
46238647 |
T |
|
| Q |
213 |
tgtggtactgttaacgaggaaaaggaggaaaacgttaaagaagttgtgaattttttagggtttttaattgatgtgaacttgttatgttgtttgtctat |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46238648 |
tgtggtactgttaacgaggaaaaggaggaaaacgttaaagatgttgtgaattttttagggtttttaattgatgtgaacttgttatgttgtttgtctat |
46238745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 13 - 310
Target Start/End: Complemental strand, 3456210 - 3455913
Alignment:
| Q |
13 |
gaaatgaaggtgacgcggaaagaaggagagaagacgaacgaagttgcgaagaagatgcatgaaacgatcgaaggacaatcgacggttatgaaaaacgttg |
112 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
3456210 |
gaaacgaaggtgacgccgaaagaaggagagaagacgaacgaagttgcgaagaagatgcaggaaacaatcgaagggcaatcgacggttatgaaaaacgttg |
3456111 |
T |
|
| Q |
113 |
gagctccagttgctgatgtaagttgtctattatgtgaatccctttactttcctccctttactcctatgaatatgcatgctatttctttgtttattcttgt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3456110 |
gagctccagttgctgatgtaagttgtctattatgtgaatccctttactttcttctgtttactcctaagaatatgcatgctatttctttgtttattcttgt |
3456011 |
T |
|
| Q |
213 |
tgtggtactgttaacgaggaaaaggaggaaaacgttaaagaagttgtgaattttttagggtttttaattgatgtgaacttgttatgttgtttgtctat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3456010 |
tgtggtactgttaacgaggaaaaggaggaaaacgttaaagaagttgtgaattttttagggttttaaattgatgtgaacttgttatgttgtttgtctat |
3455913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University