View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15514_high_20 (Length: 326)

Name: NF15514_high_20
Description: NF15514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15514_high_20
NF15514_high_20
[»] chr2 (1 HSPs)
chr2 (15-308)||(33377736-33378030)


Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 308
Target Start/End: Complemental strand, 33378030 - 33377736
Alignment:
Q  15 gagaggctaatcttgtagctaatgttaaacaagctatcgttgttcaagattccagcatcaaattcacttcttgagaaggaaacggaagatgtagatacgt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33378030 gagaggctaatcttgtagctaatgttaaacaagctatcgttgttcaagattccagcatcaaattcacttcttgagatggaaacggaagatgtagatacgt 33377931  T
Q  115 actcatcatcaacaaataagggagacgaagagccccaagctacnnnnnnnn-ggactctctaatcgacatatcaaatttcatgtcatatgaatatgcatc 213  Q
    |||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33377930 actcatcatcaacaaataagggagacgaagagccccaagctactttttttttggactctctaatcgacatatcaaatttcatgtcatatgaatatgcatc 33377831  T
Q  214 tgggtaccttttcccttggttctcaataactttgtgtggtggacatgattgattaactctatcaagttggctatattcataccttaagtctttac 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33377830 tgggtaccttttcccttggttctcaataactttgtgtggtggacatgattgattaactctatcaagttggctatattcataccttaagtctttac 33377736  T

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