View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15514_high_26 (Length: 277)
Name: NF15514_high_26
Description: NF15514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15514_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 85 - 257
Target Start/End: Original strand, 36139464 - 36139636
Alignment:
| Q |
85 |
ataattcagaagattaatttgttttctaataattgattctacatgcagtacatccaattgggtttgaacttggaaaaccatcagatatgaaaaaagcagt |
184 |
Q |
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| T |
36139464 |
ataattcagaagattaatttgttttcgaataattgattctacatgcagtacatccaattgggtttgaacttggaaaaccatcagatatgaaaaaagcagt |
36139563 |
T |
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| Q |
185 |
gagaatagcattaatcctatgtgcactcatatacttttcaataggcctatttggttacctattatttggtgat |
257 |
Q |
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| T |
36139564 |
gagaatagcattaatcctatgtgcactcatatacttttcaataggcctatttggttacctattatttggtgat |
36139636 |
T |
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Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 36139366 - 36139430
Alignment:
| Q |
20 |
aacaaattcaaatttgttaattttactctagtacctatggaattagaaattttgaattttgattg |
84 |
Q |
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| T |
36139366 |
aacaaattcaaatttgttaattttactctagtacctatggaattagaaattttgaattttgattg |
36139430 |
T |
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