View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15514_high_3 (Length: 626)
Name: NF15514_high_3
Description: NF15514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15514_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 18 - 616
Target Start/End: Original strand, 35158380 - 35158979
Alignment:
| Q |
18 |
gtttcaagagacgagtttcaattgttgaactcccatagtgacaatatatctgaaaatgccttacatttgtcatttactaaaaattatttgtttggaaaaa |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35158380 |
gtttcaagagacgagtttcaattgttgaactcccatagtgacaatatatctgaaaatgccttacatttgtcatttactaaaaattatttgtttggaaaaa |
35158479 |
T |
|
| Q |
118 |
ctccacttcccagaggtttgagaaccatacttttccctgtcggagtcaacaacgaagctttcttgaatactttggtatcaaggtgcacatgcttgagggt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
35158480 |
ctccacttcccagaggtttgagaaccatacttttcccagtcggagtcaacaacgaagctttcttgaatactttggtatcaaggtgcacatgcttgcgggt |
35158579 |
T |
|
| Q |
218 |
tttgcaaataaataatactggatatgagagcttgcctcgctccattggtaa-ttaaaacacttgaaatatctcaatcttgaagataatgaaaaactcaag |
316 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35158580 |
tttgcaaataaataattctggatatgagagcttgcctagctccattggtaaattaaaacacttgagatatctcaatcttgaagataatgaaaaactcaag |
35158679 |
T |
|
| Q |
317 |
agcgtccctgattcagtgtgcaaactccaaaatttaataaatttgaacctcagtggatgcataaatctacaagaattgcccaatggaataggaaacttaa |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35158680 |
agcgtccctgattcagtgtgcaaactccaaaatttaataaatttggacctcagtggatgcataaagctacaagaattgcccaatggaataggaaacttaa |
35158779 |
T |
|
| Q |
417 |
tcagtctacaacaactgcatataaccacattgcaatctaaatttccagacaatgagattgcaaaattgacttttctagaaatattaatgcttgttgattg |
516 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
35158780 |
tcagtctacaacaactacatataaccacattgcaatctaaatttccagacaatgagattgcaaaattgacttttctagaaatattaacgcttgttgattg |
35158879 |
T |
|
| Q |
517 |
tgacaacttggagtcattgtttgaaggaatagaagaacttcctagtcttaaatttttggatattacttcttgtaagagtctaaggtcagtgcctcttcat |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
35158880 |
tgacaacttggagtcattgtttgaaggaatagaagaacttccgagtcttaaatttttggatatttattcttgtaagagtctaaggtcagtgcctcttcat |
35158979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 81 - 495
Target Start/End: Complemental strand, 29601969 - 29601554
Alignment:
| Q |
81 |
catttgtcatttactaaaaattatttgtttggaaaaactccacttcccagaggtttgagaaccatacttttccctgtcggagtcaacaacgaagctttct |
180 |
Q |
| |
|
|||||||||||||||| |||| |||| ||||| |||| ||| ||||| ||| |||||||||||||||| || | | || |||||| | |||||| | |
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|
| T |
29601969 |
catttgtcatttactacaaatgatttacttggacaaacaccaattcccgcaggactgagaaccatactttttccattagaagccaacaatgtagcttttt |
29601870 |
T |
|
| Q |
181 |
tgaatactttggtatcaaggtgcacatgcttgagggttttgcaaataaataatactggatatgagagcttgcctcgctccattggtaa-ttaaaacactt |
279 |
Q |
| |
|
|||| | ||||| ||||||||| | || |||| | ||||||| ||| | || || ||||||||| ||||| ||||| |||||||| |||||||| || |
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|
| T |
29601869 |
tgaacaatttggcatcaaggtgtaaattcttgcgagttttgcggttaactcattctacatatgagagtttgccccgctcaattggtaaattaaaacattt |
29601770 |
T |
|
| Q |
280 |
gaaatatctcaatcttgaagataatgaaaaactcaagagcgtccctgattcagtgtgcaaactccaaaatttaataaatttgaacctcagtggatgcata |
379 |
Q |
| |
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|| ||||||||||||| | | ||| || || | |||||| |||||||||||||||||||||| || ||||| || ||||| || |||||| || |
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| T |
29601769 |
gagatatctcaatcttaagggaaataaagaattgaagagcctccctgattcagtgtgcaaacttcagaatttgcaaactttgattcttgagggatgctta |
29601670 |
T |
|
| Q |
380 |
aatctacaagaattgcccaatggaataggaaacttaatcagtctacaacaactgcatataaccacattgcaatctaaatttccagacaatgagattgcaa |
479 |
Q |
| |
|
|| || || |||| |||||||| |||||||| || ||||| || | |||||| |||||||||||| ||||||||| ||||||||||| |||||||| | |
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|
| T |
29601669 |
aagcttgaaaaattacccaatgggataggaaatttgatcagccttcgacaactacatataaccacaatgcaatctagttttccagacaaagagattgcca |
29601570 |
T |
|
| Q |
480 |
aattgacttttctaga |
495 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
29601569 |
aattgacttatctaga |
29601554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 22 - 488
Target Start/End: Original strand, 29744233 - 29744699
Alignment:
| Q |
22 |
caagagacgagtttcaattgttgaactcccatagtgacaatatatctgaaaatgccttacatttgtcatttactaaaaattatttgtttggaaaaactcc |
121 |
Q |
| |
|
||||||| ||||||||||||| || | ||||| ||| |||||| ||| |||| | |||||||||||||||| |||| ||||| ||||| |||| | |
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|
| T |
29744233 |
caagagattagtttcaattgttaaaattccataatgaaaatataattgagaatgttctccatttgtcatttactacaaatgatttgcttggacaaacatc |
29744332 |
T |
|
| Q |
122 |
acttcccagaggtttgagaaccatacttttccctgtcggagtcaacaacgaagctttcttgaatactttggtatcaaggtgcacatgcttgagggttttg |
221 |
Q |
| |
|
| |||||| || ||||||||||||||||| || | | |||||| |||||||||||| | ||||| |||||||| | || |||| | |||||| |
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|
| T |
29744333 |
aattcccactggattgagaaccatactttttcca-taaaatccaacaatatagctttcttgaacaatttggcatcaaggtttaaattcttgcgagttttg |
29744431 |
T |
|
| Q |
222 |
caaataaataatactggatatgagagcttgcctcgctccattggtaa-ttaaaacacttgaaatatctcaatcttgaagataatgaaaaactcaagagcg |
320 |
Q |
| |
|
|| ||| |||| || ||||||||| || || ||||| |||| ||| ||||| || ||| ||||||||||||| | || ||| || || | |||| | |
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|
| T |
29744432 |
cagttaactaattctaaatatgagagtttaccccgctcaattgataaattaaagcatttgcgatatctcaatcttcaggacaataaagaattgaagatcc |
29744531 |
T |
|
| Q |
321 |
tccctgattcagtgtgcaaactccaaaatttaataaatttgaacctcagtggatgcataaatctacaagaattgcccaatggaataggaaacttaatcag |
420 |
Q |
| |
|
|||||||||||||||||||||| || ||||| | |||||| ||| |||||||| |||| | || ||||||||||||||||||||| || ||||| |
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|
| T |
29744532 |
tccctgattcagtgtgcaaacttcagaatttgcaatctttgaatctcggtggatgcttaaagtttgaaacattgcccaatggaataggaaatttgatcag |
29744631 |
T |
|
| Q |
421 |
tctacaacaactgcatataaccacattgcaatctaaatttccagacaatgagattgcaaaattgactt |
488 |
Q |
| |
|
|| | || || ||||||||| || |||||||| | ||||||||||| |||||||| |||||||||| |
|
|
| T |
29744632 |
ccttcggcagctacatataaccgcaatgcaatctgattttccagacaaagagattgccaaattgactt |
29744699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 22 - 495
Target Start/End: Original strand, 29751266 - 29751740
Alignment:
| Q |
22 |
caagagacgagtttcaattgttgaactcccatagtgacaatatatctgaaaatgccttacatttgtcatttactaaaaattatttgtttggaaaaactcc |
121 |
Q |
| |
|
||||||| |||||||||||| |||| | ||||| ||| |||||| | | |||| | |||||||||||||||| |||| |||| ||||| |||| || |
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|
| T |
29751266 |
caagagatgagtttcaattgctgaaattccataatgaaaatataattaagaatgttctccatttgtcatttactacaaatgatttacttggacaaacacc |
29751365 |
T |
|
| Q |
122 |
acttcccagaggtttgagaaccatacttttc-cctgtcggagtcaacaacgaagctttcttgaatactttggtatcaaggtgcacatgcttgagggtttt |
220 |
Q |
| |
|
| ||||| ||| |||||||||||||||| || | | || |||||| | |||||| ||||| | ||||| ||||||||| | || |||| | ||||| |
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|
| T |
29751366 |
aattcccgcaggactgagaaccatacttttttccattagaagccaacaatgtagcttttttgaacaatttggcatcaaggtgtaaattcttgcgagtttt |
29751465 |
T |
|
| Q |
221 |
gcaaataaataatactggatatgagagcttgcctcgctccattggtaa-ttaaaacacttgaaatatctcaatcttgaagataatgaaaaactcaagagc |
319 |
Q |
| |
|
|| ||| | || || ||||||||| || || ||||| |||||||| |||||||| |||| |||||||| |||| | | ||| || || | |||||| |
|
|
| T |
29751466 |
gcggttaactcattctacatatgagagttttccccgctcaattggtaaattaaaacatttgagatatctca-tcttaagggaaataaagaattgaagagc |
29751564 |
T |
|
| Q |
320 |
gtccctgattcagtgtgcaaactccaaaatttaataaatttgaacctcagtggatgcataaatctacaagaattgcccaatggaataggaaacttaatca |
419 |
Q |
| |
|
|||| ||||||||||||||||| || ||||| || ||||| || |||||| |||| || || |||| |||||||| |||||||| || |||| |
|
|
| T |
29751565 |
ctcccagattcagtgtgcaaacttcagaatttgcaaactttgattcttgagggatgcttaaagcttgaaaaattacccaatgggataggaaatttgatca |
29751664 |
T |
|
| Q |
420 |
gtctacaacaactgcatataaccacattgcaatctaaatttccagacaatgagattgcaaaattgacttttctaga |
495 |
Q |
| |
|
| || | |||||| |||||||||||| ||||||||| ||||||||||| |||||||| |||||||||| |||||| |
|
|
| T |
29751665 |
gccttcgacaactacatataaccacaatgcaatctagttttccagacaaagagattgccaaattgacttctctaga |
29751740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 159 - 411
Target Start/End: Original strand, 49353014 - 49353267
Alignment:
| Q |
159 |
ggagtcaacaacgaagctttcttgaatactttggtatcaaggtgcacatgcttgagggttttgcaaataaataatactggatatgagagcttgcctcgct |
258 |
Q |
| |
|
|||| |||||| |||||||||||||| |||||||| |||||||||| || |||| | ||||| || || | || || ||| ||||| ||||| |||| |
|
|
| T |
49353014 |
ggagccaacaatgaagctttcttgaaaactttggtgtcaaggtgcaaattcttgcgtgttttacagttacctgattctacatacgagagtttgccccgct |
49353113 |
T |
|
| Q |
259 |
ccattgg-taattaaaacacttgaaatatctcaatcttgaagataatgaaaaactcaagagcgtccctgattcagtgtgcaaactccaaaatttaataaa |
357 |
Q |
| |
|
| ||||| |||||||||| || | |||||||||||||| | | | || || | |||||| | ||||| ||| ||||||||||||| ||| || | |
|
|
| T |
49353114 |
ctattggcaaattaaaacatttaagatatctcaatcttggaaaaagcaaagaattgaagagccttcctgactcattgtgcaaactccagaatctatacac |
49353213 |
T |
|
| Q |
358 |
tttgaacctcagtggatgcataaatctacaagaattgcccaatggaataggaaa |
411 |
Q |
| |
|
|||||| |||| ||| |||||||| || || |||| ||||||||||||||||| |
|
|
| T |
49353214 |
tttgaaactcaatggttgcataaagcttaaaaaattacccaatggaataggaaa |
49353267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 345
Target Start/End: Original strand, 49341745 - 49341823
Alignment:
| Q |
267 |
aattaaaacacttgaaatatctcaatcttgaagataatgaaaaactcaagagcgtccctgattcagtgtgcaaactcca |
345 |
Q |
| |
|
|||||||||| || | ||||||||||||||| ||||| || || | |||||| ||||| ||||||||||||||||||| |
|
|
| T |
49341745 |
aattaaaacatttaagatatctcaatcttgagaataataaagaattgaagagcctccctaattcagtgtgcaaactcca |
49341823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 345
Target Start/End: Complemental strand, 32783175 - 32783068
Alignment:
| Q |
239 |
atatgagagcttgcctcgctccattggtaa-ttaaaacacttgaaatatctcaatcttgaagataatgaaaaactcaagagcgtccctgattcagtgtgc |
337 |
Q |
| |
|
||||||||| ||||| ||||| ||||| || |||||||| |||| ||||||||||||| | ||| | || || | |||||| ||||| ||||| ||||| |
|
|
| T |
32783175 |
atatgagagtttgccccgctctattggcaaattaaaacatttgagatatctcaatcttaagaatagtaaagaattgaagagcctccctaattcactgtgc |
32783076 |
T |
|
| Q |
338 |
aaactcca |
345 |
Q |
| |
|
|||||||| |
|
|
| T |
32783075 |
aaactcca |
32783068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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