View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15514_high_9 (Length: 478)
Name: NF15514_high_9
Description: NF15514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15514_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 470
Target Start/End: Complemental strand, 47628883 - 47628430
Alignment:
| Q |
18 |
gggaacaaggcttattgatgatgaatatgattctttggtttttgaccatgctgctcagttttttactgtcaatgattctcgttttgctgaaattgttaat |
117 |
Q |
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| T |
47628883 |
gggaacaaggattattgatgatgaatatgattctttggtttttgaccatgctgctcagttttttactgtcaatgattctcgttttgctgaaattgttaat |
47628784 |
T |
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| Q |
118 |
gtttggttggataagggtttggttcgagaatggaagggtactgtaggagagttgaagaatggtggtgagtttcttccatttttaccctctcctccaagat |
217 |
Q |
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| T |
47628783 |
gtttggttggataagggtttggttcgagaatggaagggtactgtaggagagttgaagaatggtggtgagtttcttccatttttaccctctcctccaagat |
47628684 |
T |
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| Q |
218 |
atatagctactcgtggaatgcgctttctggctgattcgttactgtctcaggttagttgttcctaatattcattgttttcaacaattaaatacttacaacc |
317 |
Q |
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| T |
47628683 |
atatagctactcgtggaatgcgctttctggctgattcgttactgtctcaggttagttcttcctaatattcattgttttcaacaattaaatacttacaacc |
47628584 |
T |
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| Q |
318 |
tacaagtgtctcagaagtgtcctagaattaaagtgtgtcaaaacgagg-nnnnnnngttggttttgggacacttatggtacgagtgtctatgggtgtcgg |
416 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47628583 |
tacaagtgtctcagaagtgtccaagaattaaattgtgtcaaaacgaggaaaataaagttggttttgggacacttatggtacgagtgtctatgggtgtcgg |
47628484 |
T |
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| Q |
417 |
acactgacgcgcattggacaccgagacacgcctaatgtcagaggtgtctgtgct |
470 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
47628483 |
acactgacgcgcattggacaccgagacatgcctaatgtcagaggtgtctctgct |
47628430 |
T |
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