View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15514_low_10 (Length: 470)
Name: NF15514_low_10
Description: NF15514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15514_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 5 - 267
Target Start/End: Complemental strand, 14908763 - 14908508
Alignment:
| Q |
5 |
tctaaaaatagagggttaaaattgctgnnnnnnnaaatataaagggtcaaaagtgcatcttttaaagatagagatatttataatattttctaggcttatg |
104 |
Q |
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| T |
14908763 |
tctaaaaatagagggttaaaattgctgtttttt-aaatataaagggtcaaaagtgcatct------gatagaaatatttataatattttctaggcttatg |
14908671 |
T |
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| Q |
105 |
aatgaacatgggaaccttagaaatatggtagggaggattatcatgataaggcaaaaaattactaatccaagtggtgttcaattcaacctaatgagaaatg |
204 |
Q |
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| T |
14908670 |
aatgaacatgggaaccttagaaatatggtagggaggattatcatgataaggcaaaaaattactaatccaagtggtgttcaattcaacctaatgagaaatg |
14908571 |
T |
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| Q |
205 |
tagctgagcatctgtgatgattgattctacaagactaattgatacatcaagaatagcagcttc |
267 |
Q |
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| T |
14908570 |
tagctgagcatctgttatgattgattctacaagactaattgatacatcaagaatagcagcttc |
14908508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 302 - 460
Target Start/End: Complemental strand, 14908473 - 14908322
Alignment:
| Q |
302 |
taccctcggactgtgttttgatgatcgagtatctcacaactattattccaaacggcaaacacaatacacactcaagttgaaaatagttcatcatcgtttg |
401 |
Q |
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| T |
14908473 |
taccctcggactgtattttgatgatcgagtatctcacaactattattccaaac-------acaatacacactcaagttgaaaatagttcatcatcgtttg |
14908381 |
T |
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| Q |
402 |
aacaaagtatcaagggttcttaacctttattcttaacttccgagcaatctgtgctgctt |
460 |
Q |
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| T |
14908380 |
aacaaagtatcaagggttcttaacctttattcttaacttccgagcaatctgtgctgctt |
14908322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 398 - 460
Target Start/End: Complemental strand, 14901621 - 14901559
Alignment:
| Q |
398 |
tttgaacaaagtatcaagggttcttaacctttattcttaacttccgagcaatctgtgctgctt |
460 |
Q |
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| T |
14901621 |
tttgaacaacgtatcaagggttcttaatctttattctcaacttccgagcaatctgtgctgctt |
14901559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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