View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15514_low_11 (Length: 450)

Name: NF15514_low_11
Description: NF15514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15514_low_11
NF15514_low_11
[»] chr8 (12 HSPs)
chr8 (30-432)||(30909090-30909492)
chr8 (329-427)||(40328800-40328900)
chr8 (329-427)||(3303718-3303817)
chr8 (329-427)||(4731679-4731778)
chr8 (329-427)||(40221766-40221865)
chr8 (329-397)||(19491777-19491846)
chr8 (329-427)||(30143361-30143460)
chr8 (329-397)||(1292541-1292610)
chr8 (329-397)||(4162518-4162587)
chr8 (330-397)||(3772214-3772282)
chr8 (329-427)||(30291627-30291727)
chr8 (329-424)||(42435042-42435138)
[»] chr4 (23 HSPs)
chr4 (330-397)||(32091500-32091568)
chr4 (329-427)||(24969133-24969232)
chr4 (329-397)||(34788853-34788922)
chr4 (329-427)||(8665429-8665528)
chr4 (329-427)||(12073413-12073512)
chr4 (329-427)||(40632466-40632565)
chr4 (353-427)||(48893686-48893761)
chr4 (331-427)||(26175684-26175781)
chr4 (329-397)||(44570444-44570513)
chr4 (329-427)||(46703521-46703621)
chr4 (328-427)||(27417013-27417113)
chr4 (329-424)||(46147442-46147538)
chr4 (329-427)||(26364257-26364356)
chr4 (310-427)||(34112819-34112938)
chr4 (325-388)||(39662341-39662404)
chr4 (353-427)||(50673895-50673970)
chr4 (330-393)||(51904491-51904554)
chr4 (329-427)||(52467402-52467501)
chr4 (329-427)||(47038459-47038557)
chr4 (329-397)||(44967908-44967977)
chr4 (329-427)||(6542227-6542327)
chr4 (356-427)||(6656004-6656076)
chr4 (325-385)||(22628986-22629046)
[»] chr3 (15 HSPs)
chr3 (329-427)||(46860495-46860594)
chr3 (329-427)||(22835050-22835149)
chr3 (329-427)||(32744484-32744582)
chr3 (329-427)||(34491233-34491332)
chr3 (327-427)||(29810887-29810988)
chr3 (329-428)||(7764485-7764585)
chr3 (329-427)||(32891124-32891224)
chr3 (329-427)||(760868-760967)
chr3 (329-427)||(7762286-7762385)
chr3 (329-427)||(9581303-9581402)
chr3 (329-427)||(30236146-30236245)
chr3 (329-427)||(44700526-44700625)
chr3 (329-427)||(51398835-51398934)
chr3 (329-426)||(39153410-39153508)
chr3 (329-427)||(9666514-9666614)
[»] chr2 (11 HSPs)
chr2 (329-427)||(11151639-11151738)
chr2 (329-428)||(28523071-28523170)
chr2 (329-427)||(723792-723891)
chr2 (353-427)||(36773607-36773682)
chr2 (329-427)||(42362373-42362472)
chr2 (329-427)||(45726950-45727049)
chr2 (329-397)||(42261564-42261633)
chr2 (329-427)||(11690522-11690621)
chr2 (329-427)||(36318057-36318156)
chr2 (329-427)||(36988124-36988223)
chr2 (354-427)||(7815321-7815395)
[»] chr1 (17 HSPs)
chr1 (329-427)||(8550835-8550934)
chr1 (329-427)||(7482278-7482378)
chr1 (329-427)||(13547137-13547236)
chr1 (354-427)||(193657-193731)
chr1 (335-427)||(6808479-6808573)
chr1 (329-427)||(37168318-37168418)
chr1 (329-397)||(41360935-41361004)
chr1 (329-427)||(37559916-37560016)
chr1 (329-427)||(196956-197055)
chr1 (329-427)||(28265602-28265701)
chr1 (329-427)||(44455181-44455280)
chr1 (333-427)||(46064943-46065038)
chr1 (329-427)||(47255388-47255487)
chr1 (330-427)||(834215-834313)
chr1 (332-397)||(40122276-40122342)
chr1 (329-425)||(23555315-23555412)
chr1 (329-427)||(47115192-47115292)
[»] chr7 (15 HSPs)
chr7 (329-393)||(43363556-43363621)
chr7 (329-427)||(23565109-23565209)
chr7 (329-427)||(8359364-8359464)
chr7 (329-424)||(29608758-29608854)
chr7 (329-427)||(2390303-2390402)
chr7 (329-427)||(6431992-6432091)
chr7 (329-427)||(8153363-8153462)
chr7 (329-427)||(30024780-30024879)
chr7 (329-427)||(48489452-48489551)
chr7 (329-397)||(2361050-2361119)
chr7 (329-397)||(31518816-31518885)
chr7 (225-381)||(6688184-6688339)
chr7 (320-395)||(18396329-18396405)
chr7 (330-396)||(22328470-22328538)
chr7 (329-396)||(48599413-48599481)
[»] chr6 (10 HSPs)
chr6 (329-427)||(2972987-2973086)
chr6 (329-427)||(5043648-5043747)
chr6 (329-427)||(3808756-3808856)
chr6 (329-427)||(17758044-17758143)
chr6 (329-427)||(21588952-21589051)
chr6 (329-427)||(21593685-21593784)
chr6 (329-427)||(26830171-26830270)
chr6 (329-427)||(28137456-28137555)
chr6 (329-425)||(2171582-2171678)
chr6 (312-427)||(33160400-33160516)
[»] chr5 (11 HSPs)
chr5 (329-427)||(33831701-33831800)
chr5 (329-427)||(40147282-40147381)
chr5 (329-397)||(316783-316852)
chr5 (329-427)||(213486-213585)
chr5 (353-427)||(16452125-16452200)
chr5 (329-397)||(3325934-3326003)
chr5 (329-427)||(27637661-27637760)
chr5 (329-397)||(35616190-35616259)
chr5 (330-397)||(5887494-5887562)
chr5 (329-424)||(10054867-10054963)
chr5 (356-427)||(13239799-13239871)
[»] scaffold0002 (1 HSPs)
scaffold0002 (329-397)||(490399-490468)
[»] scaffold0219 (1 HSPs)
scaffold0219 (346-397)||(27521-27573)


Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 30 - 432
Target Start/End: Original strand, 30909090 - 30909492
Alignment:
Q  30 gcaaagcgcacagaacaaccaaacaatcttgtccaagaagattttggggtgcaagccgctcctttttgtgtgtgaggcacacaggtgcgacatgtgtaat 129  Q
    |||| ||||| || ||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||| ||||    
T  30909090 gcaaggcgcataggacagccaaacaatcttgtcccagaagattttggggtgcaagctgctcctttttgtgtgcgaggcacacgggtgcgacatgtataat 30909189  T
Q  130 catttaggaagttttgggttggtgccatttnnnnnnnagatttgggatgagaaatactttgggtgagggataatcattgagtgattgtacgaggataaat 229  Q
    ||||||| |||||||||||||||||| |||       ||||||||| ||| ||| |||||||||||||||||||||||||| |  |||| |||| |||||    
T  30909190 catttagaaagttttgggttggtgcctttttggagggagatttgggttgaaaaacactttgggtgagggataatcattgagcggctgtaagagggtaaat 30909289  T
Q  230 gaaagaaactttggtgatattctgggagaacattggaacctaaatttgttggtcctttttgcaactcttttgatcaaggaaagagagtggaaaataaatg 329  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30909290 gaaagaaacttcggtgatattctgggagaaaattggaacctaaatttgttggtcctttttgcaactcttttgatcaaggaaagagagtggaaaataaatg 30909389  T
Q  330 tagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactctttgtatctctttgttatgactctttcatagtgaattggagagatgt 429  Q
    |||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||    
T  30909390 tagaaattaggtttactcttggagagcttgtttaaactaatttcttgtaactctttgtatctctttgtaatgactcgttgatagtgaattggagagatgt 30909489  T
Q  430 tat 432  Q
    |||    
T  30909490 tat 30909492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 40328800 - 40328900
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc--tttgtatctctttgttatgactctttcatagtgaattggagaga 426  Q
    ||||||||||| |||| |||| | |||||||||||||||| |||||||||||||  ||||||||||||||| |  |||| || |||||| ||||||||||    
T  40328800 gtagaaattaggtttgttctttgtgagcttgtttaaactaatttcttgtaactcattttgtatctctttgtaagaactcattgatagtggattggagaga 40328899  T
Q  427 t 427  Q
    |    
T  40328900 t 40328900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 3303817 - 3303718
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    ||||||||||  |||| |||| | |||||||||||| ||| ||||||||||||| ||||||||||||||| |  |||| || |||||| |||| ||||||    
T  3303817 gtagaaattaagtttgttctttgtgagcttgtttaacctaatttcttgtaactcatttgtatctctttgtaagaactcattgatagtggattgaagagat 3303718  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 4731679 - 4731778
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  |||||||| | ||||||||| || ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  4731679 gtagaaattagggttgctctttgtgagcttgttgaacctaatttcttgtaacccatttgtatctctttgtaagaactcattgatagtggattggagagat 4731778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 40221766 - 40221865
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  ||| |||| | ||||||||| |||||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  40221766 gtagaaattagggttgttctttgtgagcttgttgaaactaatttcttgtaacccatttgtatctctttgtaagaactcgttgatagtggattggagagat 40221865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 397
Target Start/End: Complemental strand, 19491846 - 19491777
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 397  Q
    ||||||||||| |||| |||| | ||||||||| |||||| ||||||||||| | |||||||||||||||    
T  19491846 gtagaaattaggtttgttctttgtgagcttgttgaaactaatttcttgtaacccatttgtatctctttgt 19491777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 30143361 - 30143460
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  30143361 gtagaaattagggttgttctttgtgagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaactcattgatagtggattggagagat 30143460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 397
Target Start/End: Complemental strand, 1292610 - 1292541
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 397  Q
    ||||||||||  |||| |||| | ||||||||| || ||| ||||||||||||| |||||||||||||||    
T  1292610 gtagaaattaagtttgttctttgtgagcttgttgaagctaatttcttgtaactcatttgtatctctttgt 1292541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 397
Target Start/End: Original strand, 4162518 - 4162587
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 397  Q
    |||||| |||| |||| |||| |||| |||||| || ||| ||||||||||||| |||||||||||||||    
T  4162518 gtagaagttaggtttgttctttgagaacttgttgaagctaatttcttgtaactcatttgtatctctttgt 4162587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 397
Target Start/End: Original strand, 3772214 - 3772282
Alignment:
Q  330 tagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 397  Q
    |||||||||| |||| |||| | |||||| ||||| ||| ||||||||||||| ||||||| |||||||    
T  3772214 tagaaattaggtttgttctttgtgagcttatttaagctaatttcttgtaactcatttgtatatctttgt 3772282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 30291627 - 30291727
Alignment:
Q  329 gtagaaattagattt-gctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagaga 426  Q
    ||||||||||| ||| | |||| | ||||||||| || ||| ||||||||||||| |||||||| |||||| |  | ||||| |||||| ||||||||||    
T  30291627 gtagaaattaggttttgttctttgtgagcttgttgaagctaatttcttgtaactcatttgtatcactttgtaagaattctttgatagtggattggagaga 30291726  T
Q  427 t 427  Q
    |    
T  30291727 t 30291727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 424
Target Start/End: Complemental strand, 42435138 - 42435042
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggaga 424  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| ||||||||    
T  42435138 gtagaaattagggttgttctttgtgagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaactcattgatagtggattggaga 42435042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 397
Target Start/End: Original strand, 32091500 - 32091568
Alignment:
Q  330 tagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 397  Q
    |||||||||| |||| |||||||||| ||||| |||||| ||||||||||||| |||||||||||||||    
T  32091500 tagaaattaggtttgttcttggagagtttgttgaaactaatttcttgtaactcttttgtatctctttgt 32091568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 24969133 - 24969232
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||||||| |||| | ||||||||| || ||| ||||||||||||| ||||||||||||||| |  |||  || |||||| |||||||||||    
T  24969133 gtagaaattagatttgttctttgtgagcttgttgaagctaatttcttgtaactcatttgtatctctttgtaagaactaattgatagtggattggagagat 24969232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 397
Target Start/End: Complemental strand, 34788922 - 34788853
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 397  Q
    |||||||||||  |||||||||||||||||||| ||  || ||||||||||||| |||||||||||||||    
T  34788922 gtagaaattaggattgctcttggagagcttgttgaagttaatttcttgtaactcttttgtatctctttgt 34788853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 8665429 - 8665528
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  ||| |||| ||||||||||| || ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  8665429 gtagaaattagggttgttctttgagagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaactcattgatagtggattggagagat 8665528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 12073413 - 12073512
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    ||||||||||| |||| |||| | ||||||||| || ||| ||| ||||||||| ||||||||||||||| |  |||| || |||||| |||||||||||    
T  12073413 gtagaaattaggtttgttctttgtgagcttgttgaagctaatttattgtaactcatttgtatctctttgtaagaactcattgatagtggattggagagat 12073512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 40632466 - 40632565
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaa-ctctttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||| ||| |||| | ||||||||| || ||| |||||||||| || ||||||||||||||| |  |||| || |||||| |||||||||||    
T  40632466 gtagaaattagagttgttctttgtgagcttgttgaagctaatttcttgtaacctatttgtatctctttgtaagaactcattgatagtggattggagagat 40632565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 427
Target Start/End: Complemental strand, 48893761 - 48893686
Alignment:
Q  353 gagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    ||||||||| || ||| ||||||||||||| ||||||||||||||| |  ||||||| |||||| |||||||||||    
T  48893761 gagcttgttgaagctaatttcttgtaactcatttgtatctctttgtaagaactctttgatagtggattggagagat 48893686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 427
Target Start/End: Complemental strand, 26175781 - 26175684
Alignment:
Q  331 agaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||  ||| |||| | ||||||||| |||||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  26175781 agaaattagggttgttctttgtgagcttgttgaaactaatttcttgtaacccatttgtatctctttgtaagaactcattgatagtggattggagagat 26175684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 397
Target Start/End: Complemental strand, 44570513 - 44570444
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaac-tctttgtatctctttgt 397  Q
    ||||||||||  |||| | |||||||||||||| |||||| ||||||||||| | |||||||||||||||    
T  44570513 gtagaaattatgtttgttgttggagagcttgttgaaactaatttcttgtaacatttttgtatctctttgt 44570444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 46703521 - 46703621
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc--tttgtatctctttgttatgactctttcatagtgaattggagaga 426  Q
    |||||||||||  ||| |||| | |||||||||||| ||| ||||||||||| |  ||||||||||||||| |  |||| || |||||| ||||||||||    
T  46703521 gtagaaattagggttgttctttgtgagcttgtttaagctaatttcttgtaacccattttgtatctctttgtaagaactcatttatagtggattggagaga 46703620  T
Q  427 t 427  Q
    |    
T  46703621 t 46703621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 427
Target Start/End: Complemental strand, 27417113 - 27417013
Alignment:
Q  328 tgtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagaga 426  Q
    ||||||||||||  ||| |||| | ||||||||| || ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| ||||||||||    
T  27417113 tgtagaaattagggttgttctttgtgagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaaaaactcattgatagtggattggagaga 27417014  T
Q  427 t 427  Q
    |    
T  27417013 t 27417013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 424
Target Start/End: Complemental strand, 46147538 - 46147442
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggaga 424  Q
    |||||||||||  ||| || | | ||||||||| || ||| ||||||||||||| ||||||||||||||| |  ||||||| |||||| ||||||||    
T  46147538 gtagaaattagggttgttcattgtgagcttgttgaagctaatttcttgtaactcatttgtatctctttgtaagaactctttgatagtggattggaga 46147442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 26364257 - 26364356
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  ||| |||| | || |||||| || ||| ||||||||||||| ||||||||||||||| |  |||| || |||||| |||||||||||    
T  26364257 gtagaaattagggttgttctttgtgaacttgttgaagctaatttcttgtaactcatttgtatctctttgtaagaactcattaatagtggattggagagat 26364356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 427
Target Start/End: Original strand, 34112819 - 34112938
Alignment:
Q  310 aagagagtggaaaataaatgtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatg-actctt 407  Q
    |||||| ||||||| ||| ||||||||||  |||| ||| |||||||||||| || ||| |||| |||||| | |||| |||||||||| | | |||| |    
T  34112819 aagagattggaaaaaaaaagtagaaattatgtttgttctaggagagcttgttgaagctaatttcatgtaacccttttgcatctctttgtaaagaactcat 34112918  T
Q  408 tcatagtgaattggagagat 427  Q
    | |||||||| |||||||||    
T  34112919 tgatagtgaagtggagagat 34112938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 388
Target Start/End: Complemental strand, 39662404 - 39662341
Alignment:
Q  325 aaatgtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactctttgta 388  Q
    |||||||||||| | ||||||||||||| || ||||| || ||| |||||||||||| ||||||    
T  39662404 aaatgtagaaatcaaatttgctcttggaaagattgttgaagctaatttcttgtaactatttgta 39662341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 427
Target Start/End: Complemental strand, 50673970 - 50673895
Alignment:
Q  353 gagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    ||||||||| || ||| ||||||||||||| ||||||||||||||| |  |||| || |||||| |||||||||||    
T  50673970 gagcttgttgaagctaatttcttgtaactcatttgtatctctttgtaagaactcattgatagtggattggagagat 50673895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 393
Target Start/End: Complemental strand, 51904554 - 51904491
Alignment:
Q  330 tagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactctttgtatctct 393  Q
    |||||||||||| || |||||||||| ||||  || ||| ||||||| ||||||||||||||||    
T  51904554 tagaaattagatatgttcttggagagtttgtcgaatctaatttcttgcaactctttgtatctct 51904491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 52467501 - 52467402
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    ||||||||||| |||| |||| | ||||||||| || ||| | ||||||||| | |||||||| |||||| || ||| ||| |||||| |||||||||||    
T  52467501 gtagaaattaggtttgttctttgtgagcttgttgaagctaatatcttgtaacccatttgtatcactttgtaataactttttgatagtggattggagagat 52467402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 47038557 - 47038459
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactctttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||   ||||||||| ||||| | ||||| || |||||| |||||||||||    
T  47038557 gtagaaattagggttgttctttgtgagcttgttgaagctaatttcttgtaatcatttgtatctgtttgtaaggactcattgatagtggattggagagat 47038459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 397
Target Start/End: Complemental strand, 44967977 - 44967908
Alignment:
Q  329 gtagaaattagattt-gctcttggagagcttgtttaaactattttcttgtaactctttgtatctctttgt 397  Q
    ||||||||||| ||| |||||||||||||||| | || | | |||||||||||  |||||||||||||||    
T  44967977 gtagaaattaggttttgctcttggagagcttgctgaagccaatttcttgtaaccatttgtatctctttgt 44967908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 6542327 - 6542227
Alignment:
Q  329 gtagaaattag-atttgctcttggagagcttgtttaaactattttcttgtaactcttt-gtatctctttgttatgactctttcatagtgaattggagaga 426  Q
    ||||||||||| ||||| |||| | ||||||||| |||||| |||||||| |  |||| |||||||||||| |  |||| || |||||| ||||||||||    
T  6542327 gtagaaattaggatttgttctttgtgagcttgttgaaactaatttcttgttagccttttgtatctctttgtaagaactcgttgatagtggattggagaga 6542228  T
Q  427 t 427  Q
    |    
T  6542227 t 6542227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 427
Target Start/End: Original strand, 6656004 - 6656076
Alignment:
Q  356 cttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||| || ||| ||||||||||||| ||||||||||||||| |  |||| || |||||| |||||||||||    
T  6656004 cttgttgaagctaatttcttgtaactcatttgtatctctttgtaagaactcattgatagtggattggagagat 6656076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 385
Target Start/End: Complemental strand, 22629046 - 22628986
Alignment:
Q  325 aaatgtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactcttt 385  Q
    |||||||||||||||  ||||||||||||||||| || ||  || |||||| |||||||||    
T  22629046 aaatgtagaaattaggattgctcttggagagcttattgaagttaatttcttataactcttt 22628986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 46860495 - 46860594
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    ||||||||||| |||| |||| | ||||||||| || ||| ||||||||||| | ||||||||||||||| || |||| || |||||| |||||||||||    
T  46860495 gtagaaattaggtttgttctttgtgagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaataactcattgatagtggattggagagat 46860594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 22835149 - 22835050
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    ||||||||||| |||| |||| | |||||||||||| ||| ||||||||||| | |||||||| |||||| |  |||| || |||||| |||||||||||    
T  22835149 gtagaaattaggtttgttctttgtgagcttgtttaagctaatttcttgtaacccatttgtatccctttgtaagaactcattgatagtggattggagagat 22835050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 32744582 - 32744484
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    ||||||||||| |||| |||| | |||||||||||| ||| ||||||||||||| |||||||| |||||| |  ||||||| |||||| |||| ||||||    
T  32744582 gtagaaattag-tttgttctttgtgagcttgtttaagctaatttcttgtaactcatttgtatcactttgtaagaactctttgatagtggattgaagagat 32744484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 34491233 - 34491332
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||||| ||||||||||||||| |  |||| || |||||| |||||||||||    
T  34491233 gtagaaattagggttgttctttgtgagcttgttgaagctaatttcttgtaactcatttgtatctctttgtaagaactcattgatagtggattggagagat 34491332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 427
Target Start/End: Original strand, 29810887 - 29810988
Alignment:
Q  327 atgtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagag 425  Q
    |||||||||||||| ||| |||| | || |||||| || ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||    
T  29810887 atgtagaaattagagttgttctttgtgaacttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaactcattgatagtggattggagag 29810986  T
Q  426 at 427  Q
    ||    
T  29810987 at 29810988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 428
Target Start/End: Original strand, 7764485 - 7764585
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactcttt-gtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  ||| |||| | || |||||| || ||| |||||||||||||||| |||||||||||| |  |||| || |||||| |||||||||||    
T  7764485 gtagaaattagggttgttctttgtgaacttgttaaagctaatttcttgtaactcttttgtatctctttgtaagaactcattgatagtggattggagagat 7764584  T
Q  428 g 428  Q
    |    
T  7764585 g 7764585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 32891124 - 32891224
Alignment:
Q  329 gtagaaatta-gatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagaga 426  Q
    |||||||||| | |||| |||| | ||||||||| || ||| ||||||||||||| ||||||||||||||| |  |||| || |||||| ||||||||||    
T  32891124 gtagaaattaagttttgttctttgtgagcttgttgaagctaatttcttgtaactcatttgtatctctttgtaagaactcgttgatagtggattggagaga 32891223  T
Q  427 t 427  Q
    |    
T  32891224 t 32891224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 760868 - 760967
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    ||||||||||| | || |||| | |||||||||||| ||| ||||||||||| | |||||||| |||||| |  |||| || |||||| |||||||||||    
T  760868 gtagaaattaggtctgttctttgtgagcttgtttaagctaatttcttgtaacccatttgtatccctttgtaagaactcattgatagtggattggagagat 760967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 7762286 - 7762385
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  ||| |||| | || |||||| || ||| ||||||||||||| ||||||||||||||| |  |||| || |||||| |||||||||||    
T  7762286 gtagaaattagggttgttctttgtgaacttgttgaagctaatttcttgtaactcttttgtatctctttgtaagaactcattgatagtggattggagagat 7762385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 9581303 - 9581402
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    ||||||||||| |||| |||| | |||||||||||| ||| |||||| |||| | |||||||| |||||| |  |||| || |||||| |||||||||||    
T  9581303 gtagaaattaggtttgttctttgtgagcttgtttaagctaatttcttttaacccatttgtatccctttgtaagaactcattgatagtggattggagagat 9581402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 30236146 - 30236245
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaac-tctttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  30236146 gtagaaattagggttgttctttgtgagcttgttgaagctaatttcttgtaacctatttgtatctctttgtaagaactcattgatagtggattggagagat 30236245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 44700625 - 44700526
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaac-tctttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  ||| |||| | ||| ||||| || ||| ||||||||||| | ||||||||||||||| |  ||||||| |||||| |||||||||||    
T  44700625 gtagaaattagggttgttctttgtgagtttgttgaagctaatttcttgtaacctatttgtatctctttgtaagaactctttgatagtggattggagagat 44700526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 51398835 - 51398934
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  ||| |||| | || |||||| || ||| ||||||||||||| ||||||||||||||| |  |||| || |||||| |||||||||||    
T  51398835 gtagaaattagggttgttcttagtgaacttgttgaagctaatttcttgtaactcatttgtatctctttgtaagaactcattgatagtggattggagagat 51398934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 426
Target Start/End: Complemental strand, 39153508 - 39153410
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagaga 426  Q
    ||||||||||| |||| || | | |||||||||||| ||| ||||||||||||| |||||||| |||| | |  |||| || |||||| ||||||||||    
T  39153508 gtagaaattaggtttgttcattgtgagcttgtttaagctaatttcttgtaactcatttgtatccctttataagaactcattgatagtggattggagaga 39153410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 9666614 - 9666514
Alignment:
Q  329 gtagaaattagattt-gctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagaga 426  Q
    ||||||||||||||| | |||| | ||||||||| || ||| ||||||||||||| ||| || |||||||| |  | ||||| |||||| ||||||||||    
T  9666614 gtagaaattagattttgttctttgtgagcttgttgaagctaatttcttgtaactcatttatacctctttgtaagaattctttgatagtggattggagaga 9666515  T
Q  427 t 427  Q
    |    
T  9666514 t 9666514  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 11151738 - 11151639
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||||||| |||| | |||||||||||| ||| ||||||||||| | |||||||| |||||| |  ||||||  |||||| |||||||||||    
T  11151738 gtagaaattagatttgttctttgtgagcttgtttaagctaatttcttgtaacccatttgtatcactttgtaagaactcttagatagtggattggagagat 11151639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 428
Target Start/End: Complemental strand, 28523170 - 28523071
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactctttgtatctctttgttatgactctttcatagtgaattggagagatg 428  Q
    |||||||||| |||||||| ||||||| ||||  || ||| ||| || |||| |||||||||||||||| |||||||||| ||||||  ||| |||||||    
T  28523170 gtagaaattaaatttgctcgtggagagattgtggaatctaattttttataacactttgtatctctttgtaatgactctttgatagtgggttgaagagatg 28523071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 723891 - 723792
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    ||||||||||| |||| |||| | |||||||||||| ||| ||||||||||| | |||||||| |||||| |  |||| || |||||| |||||||||||    
T  723891 gtagaaattaggtttgttctttgtgagcttgtttaagctaatttcttgtaacccatttgtatccctttgtaagaactcattgatagtggattggagagat 723792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 427
Target Start/End: Original strand, 36773607 - 36773682
Alignment:
Q  353 gagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    ||||||||| || ||| ||||||||||||| ||||||||||||||| |  ||||||| |||||| |||||||||||    
T  36773607 gagcttgttgaagctaatttcttgtaactcatttgtatctctttgtaagaactctttgatagtggattggagagat 36773682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 42362373 - 42362472
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    ||||||||||| |||| |||| | |||||||||||| ||| ||||||||||| | |||||||| |||||| |  |||| || |||||| |||||||||||    
T  42362373 gtagaaattaggtttgttctttgtgagcttgtttaagctaatttcttgtaacccatttgtatccctttgtaagaactcattgatagtggattggagagat 42362472  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 45726950 - 45727049
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaa-ctctttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||| ||| |||| | ||||||||| || ||| |||||||||| || ||||||||||||||| |  |||| || |||||| |||||||||||    
T  45726950 gtagaaattagagttgttctttgtgagcttgttgaagctaatttcttgtaacctatttgtatctctttgtaagaactcattgatagtggattggagagat 45727049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 397
Target Start/End: Complemental strand, 42261633 - 42261564
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 397  Q
    ||||||||||  |||| |||||||||||||||| || ||| ||||||||||||| ||||||| |||||||    
T  42261633 gtagaaattaagtttgttcttggagagcttgttgaagctaatttcttgtaactcttttgtatatctttgt 42261564  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 11690522 - 11690621
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    ||||||||||| |||| |||| | |||||||||||| ||| ||||||||||| | |||||||| |||||| |  | || || |||||| |||||||||||    
T  11690522 gtagaaattaggtttgttctttgtgagcttgtttaagctaatttcttgtaacccatttgtatccctttgtaagaaatcgttgatagtggattggagagat 11690621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 36318156 - 36318057
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  ||| |||| | ||||||||| |||||| ||| ||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  36318156 gtagaaattagggttgttctttgtgagcttgttgaaactaatttattgtaacccatttgtatctctttgtaagaactcattgatagtggattggagagat 36318057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 36988223 - 36988124
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  ||| |||  | ||||||||  |||||| ||||||||||||| ||||||||||||||| |  |||| || |||||| |||||||||||    
T  36988223 gtagaaattagggttgttctatgtgagcttgtcaaaactaatttcttgtaactcttttgtatctctttgtaagaactcattgatagtggattggagagat 36988124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 427
Target Start/End: Complemental strand, 7815395 - 7815321
Alignment:
Q  354 agcttgtttaaactattttcttgtaactcttt-gtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||| || ||| |||||||||||||||| |||||||||||| |  |||| || |||||| |||||||||||    
T  7815395 agcttgttgaagctaatttcttgtaactcttttgtatctctttgtaagaactcatttatagtggattggagagat 7815321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 8550934 - 8550835
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    ||||||||||| |||| |||| | |||||||||||| ||| ||||||||||||| |||||||| |||||| |  |||| || |||||| |||||||||||    
T  8550934 gtagaaattaggtttgttctttgtgagcttgtttaagctaatttcttgtaactcatttgtatccctttgtaagaactcattgatagtggattggagagat 8550835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 7482378 - 7482278
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc--tttgtatctctttgttatgactctttcatagtgaattggagaga 426  Q
    |||||||||||  ||| |||| | |||||||||||| ||| ||||||||||| |  ||||||||||||||| |  |||| || |||||||||||||||||    
T  7482378 gtagaaattagggttgttctttgtgagcttgtttaagctaatttcttgtaacccattttgtatctctttgtaagaactcattgatagtgaattggagaga 7482279  T
Q  427 t 427  Q
    |    
T  7482278 t 7482278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 13547236 - 13547137
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  ||| |||| | ||||||||| || ||||||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  13547236 gtagaaattagggttgttctttgtgagcttgttgaagctattttcttgtaacccatttgtatctctttgtaagaactcattgatagtggattggagagat 13547137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 427
Target Start/End: Original strand, 193657 - 193731
Alignment:
Q  354 agcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||| || ||| ||||||||||||| ||||||||||||||| || |||| || |||||| |||||||||||    
T  193657 agcttgttgaagctaatttcttgtaactcatttgtatctctttgtaataactcattgatagtggattggagagat 193731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 427
Target Start/End: Original strand, 6808479 - 6808573
Alignment:
Q  335 attagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatg-actctttcatagtgaattggagagat 427  Q
    ||||| |||| |||||||||||||||| || |||  |||||||||||| ||||||||||||||| | | |||| || |||||| |||||||||||    
T  6808479 attaggtttgttcttggagagcttgttgaagctaacttcttgtaactcttttgtatctctttgtaaagaactcatttatagtggattggagagat 6808573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 37168318 - 37168418
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc--tttgtatctctttgttatgactctttcatagtgaattggagaga 426  Q
    |||||||||||  ||| |||| | |||||||||||| ||| ||||||||||| |  ||||||||||||||| |  |||| || |||||| ||||||||||    
T  37168318 gtagaaattagggttgttctttgtgagcttgtttaagctaatttcttgtaacccattttgtatctctttgtaagaactcattgatagtggattggagaga 37168417  T
Q  427 t 427  Q
    |    
T  37168418 t 37168418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 397
Target Start/End: Original strand, 41360935 - 41361004
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 397  Q
    ||||||||||| |||| |||| | ||||||||| |||||| ||||||||||| | |||||||||||||||    
T  41360935 gtagaaattaggtttgttctttgtgagcttgttgaaactaatttcttgtaacccatttgtatctctttgt 41361004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 37560016 - 37559916
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaa-ctattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagaga 426  Q
    |||||||||||| ||| |||| | || |||||| ||| ||| ||||||||||| | ||||||||||||||| |  |||| || |||||||||||||||||    
T  37560016 gtagaaattagagttgttctttgtgaacttgttgaaagctaatttcttgtaacccatttgtatctctttgtaagaactcgttgatagtgaattggagaga 37559917  T
Q  427 t 427  Q
    |    
T  37559916 t 37559916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 197055 - 196956
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  ||| |||| | ||||||||||||  || ||||||||||||| |||||||| |||||| |  |||| || |||||| |||||||||||    
T  197055 gtagaaattagggttgttctttgtgagcttgtttaagttaatttcttgtaactcatttgtatccctttgtaagaactcattgatagtggattggagagat 196956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 28265701 - 28265602
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  ||| || | | ||||||||| || ||| ||||||||||| | ||||||||||||||| |  ||||||| |||||| |||||||||||    
T  28265701 gtagaaattagggttgttcattgtgagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaactctttgatagtggattggagagat 28265602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 44455181 - 44455280
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  ||| |||| | || |||||| |||||| ||||||||||||| ||||||||| ||||| |  |||| || |||||| |||||||||||    
T  44455181 gtagaaattagggttgttctttgtgaacttgttgaaactaatttcttgtaactcatttgtatctttttgtaagaactcattgatagtggattggagagat 44455280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 427
Target Start/End: Original strand, 46064943 - 46065038
Alignment:
Q  333 aaattagatttgctcttggagagcttgtttaaactattttcttgtaactctt-tgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    ||||||| |||| |||| | ||||| ||| || ||| ||||||||||||| | ||||||||||||| |  |||| ||||||||| |||||||||||    
T  46064943 aaattaggtttgttctttgtgagctcgttgaagctaatttcttgtaactcatgtgtatctctttgtaagaactcattcatagtggattggagagat 46065038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 47255487 - 47255388
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  47255487 gtagaaattagggttgttctttgtgagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaactcattgatagtggattggagagat 47255388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 427
Target Start/End: Complemental strand, 834313 - 834215
Alignment:
Q  330 tagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    ||||||||||  ||| |||| | |||||||||||| ||| ||||||||||| | |||||||| |||||| |  |||| || |||||| |||||||||||    
T  834313 tagaaattagggttgttctttgtgagcttgtttaagctaatttcttgtaacccatttgtatccctttgtaagaactcattgatagtggattggagagat 834215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 397
Target Start/End: Complemental strand, 40122342 - 40122276
Alignment:
Q  332 gaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 397  Q
    ||||||||||||| |||| | |||||||||||| ||| |||||| |||||| |||||||| ||||||    
T  40122342 gaaattagatttgttctttgtgagcttgtttaagctaatttcttataactcatttgtatcactttgt 40122276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 425
Target Start/End: Complemental strand, 23555412 - 23555315
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagag 425  Q
    |||||||||||  ||| |||| | || |||||| |||||| |||||| |||||| ||||||||||||||| |  |||| || |||||| |||||||||    
T  23555412 gtagaaattagggttgttctttgtgaacttgttgaaactaatttcttataactcatttgtatctctttgtaagaactcattgatagtggattggagag 23555315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 47115192 - 47115292
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc--tttgtatctctttgttatgactctttcatagtgaattggagaga 426  Q
    |||||||||||  ||| |||| | |||||||||||| ||| ||||||||||| |  ||||||||||||||| |  || | || |||||| ||||||||||    
T  47115192 gtagaaattagggttgttctttgtgagcttgtttaagctaatttcttgtaacccattttgtatctctttgtaaaaacccattgatagtggattggagaga 47115291  T
Q  427 t 427  Q
    |    
T  47115292 t 47115292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 393
Target Start/End: Complemental strand, 43363621 - 43363556
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctct 393  Q
    ||||||||||| |||| |||||||||||||||| |||||| ||| ||||||||| |||||||||||    
T  43363621 gtagaaattaggtttgttcttggagagcttgttgaaactaatttattgtaactcttttgtatctct 43363556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 23565209 - 23565109
Alignment:
Q  329 gtagaaattagat-ttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagaga 426  Q
    ||||||||||| | ||| |||| | ||||||||| |||||| ||||||||||||| ||||||||||||||| |  |||| || |||||| ||||||||||    
T  23565209 gtagaaattaggtcttgttctttgtgagcttgttgaaactaatttcttgtaactcttttgtatctctttgtaagaactcattgatagtggattggagaga 23565110  T
Q  427 t 427  Q
    |    
T  23565109 t 23565109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 8359464 - 8359364
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc--tttgtatctctttgttatgactctttcatagtgaattggagaga 426  Q
    |||||||||||  ||  |||| | |||||||||||||||| ||||||||||| |  ||||||||||||||| |  |||| || |||||| ||||||||||    
T  8359464 gtagaaattagggtttttctttgtgagcttgtttaaactaatttcttgtaacccattttgtatctctttgtaagaactcattgatagtggattggagaga 8359365  T
Q  427 t 427  Q
    |    
T  8359364 t 8359364  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 424
Target Start/End: Original strand, 29608758 - 29608854
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggaga 424  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||||| ||||||||||||||| |  |||| || |||||| ||||||||    
T  29608758 gtagaaattagggttgttctttgtgagcttgttgaagctaatttcttgtaactcatttgtatctctttgtaagaactcattgatagtggattggaga 29608854  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 2390303 - 2390402
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||| | ||||||||||||||| || |||| |  |||||| |||||||||||    
T  2390303 gtagaaattagggttgttctttgtgagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaataactcatatatagtggattggagagat 2390402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 6431992 - 6432091
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  6431992 gtagaaattaggattgttctttgtgagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaactcgttgatagtggattggagagat 6432091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 8153363 - 8153462
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  ||| |||| | ||| ||||  || ||| ||||||||||||| ||||||||||||||| || |||| || |||||| |||||||||||    
T  8153363 gtagaaattagggttgttctttgtgagattgtcaaagctaatttcttgtaactcatttgtatctctttgtaataactcattgatagtggattggagagat 8153462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 30024879 - 30024780
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  ||| || | | ||||||||| || ||| ||||||||||| | ||||||||||||||| |  ||||||| |||||| |||||||||||    
T  30024879 gtagaaattagggttgttcattgtgagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaactctttgatagtggattggagagat 30024780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 48489452 - 48489551
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  ||| |||| || | |||||| || ||| ||||||||||| | ||||||||||||||  || |||| ||||||||| |||||||||||    
T  48489452 gtagaaattagggttgttctttgaaaacttgttgaagctaatttcttgtaacccatttgtatctctttgcaataactcattcatagtggattggagagat 48489551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 397
Target Start/End: Complemental strand, 2361119 - 2361050
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 397  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||||| |||||||||||||||    
T  2361119 gtagaaattagggttgttctttgtgagcttgttgaagctaatttcttgtaactcatttgtatctctttgt 2361050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 397
Target Start/End: Original strand, 31518816 - 31518885
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 397  Q
    ||||||||||| |||| |||| | |||||| || || ||| ||||||||||||| |||||||||||||||    
T  31518816 gtagaaattaggtttgttctttgtgagcttattgaagctagtttcttgtaactcatttgtatctctttgt 31518885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 381
Target Start/End: Complemental strand, 6688339 - 6688184
Alignment:
Q  225 taaatgaaagaaactttggtgatattctgggagaacattggaacctaaatttgttggtcctttttgcaactcttttgatcaaggaaagagagtggaaaat 324  Q
    ||||||| ||||| || || ||| |||| |||||| ||||  | |||||||| |||||   || || |||||| ||||| |||| ||||| ||||| ||     
T  6688339 taaatgagagaaatttaggggatgttcttggagaatattgagagctaaatttattggttacttgtgtaactctcttgattaagggaagagggtggataa- 6688241  T
Q  325 aaatgtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaact 381  Q
    ||| ||||||||| | |||||| |||| ||||||||| ||  || ||||||||||||    
T  6688240 aaaggtagaaatttggtttgcttttggtgagcttgttaaatgtagtttcttgtaact 6688184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 395
Target Start/End: Original strand, 18396329 - 18396405
Alignment:
Q  320 aaaataaatgtagaaattagattt-gctcttggagagcttgtttaaactattttcttgtaactctttgtatctcttt 395  Q
    |||| ||| ||||||||||| ||| | |||||||||| ||||| || ||||||| |||||||  |||||||||||||    
T  18396329 aaaaaaaaagtagaaattaggttttgttcttggagagtttgttgaacctatttttttgtaacattttgtatctcttt 18396405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 396
Target Start/End: Complemental strand, 22328538 - 22328470
Alignment:
Q  330 tagaaattaga-tttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttg 396  Q
    ||||||||||| |||| |||| | ||||||||| || ||| ||||||||||||| ||||||||||||||    
T  22328538 tagaaattagagtttgttctttgtgagcttgttgaagctaatttcttgtaactcttttgtatctctttg 22328470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 396
Target Start/End: Complemental strand, 48599481 - 48599413
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttg 396  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||||| ||||||||||||||    
T  48599481 gtagaaattagggttgttctttgtgagcttgttgaagctaatttcttgtaactcatttgtatctctttg 48599413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 2973086 - 2972987
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    ||||||||||| |||| |||| | ||||||||| || ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  2973086 gtagaaattaggtttgttctttgtgagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaactcattgatagtggattggagagat 2972987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 5043648 - 5043747
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    ||||||||||| |||| |||| | ||||||||| || ||| ||||||||||||| ||||||||||||||| |  |||| || |||||  |||||||||||    
T  5043648 gtagaaattaggtttgttctttgtgagcttgttgaagctaatttcttgtaactcatttgtatctctttgtaagaactcattgatagtagattggagagat 5043747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 3808856 - 3808756
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc--tttgtatctctttgttatgactctttcatagtgaattggagaga 426  Q
    |||||||||||  ||| |||| | ||||||||| |||||| ||||||||||| |  ||||||||||||||| |  |||| || |||||| ||||||||||    
T  3808856 gtagaaattagggttgttctttgtgagcttgttgaaactaatttcttgtaacccattttgtatctctttgtaagaactcattgatagtggattggagaga 3808757  T
Q  427 t 427  Q
    |    
T  3808756 t 3808756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 17758044 - 17758143
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  17758044 gtagaaattagggttgttctttgtgagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaactcattgatagtggattggagagat 17758143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 21588952 - 21589051
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  21588952 gtagaaattagggttgttctttgtgagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaactcattgatagtggattggagagat 21589051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 21593685 - 21593784
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  21593685 gtagaaattagggttgttctttgtgagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaactcattgatagtggattggagagat 21593784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 26830270 - 26830171
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaa-ctctttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||| ||| |||| | ||||||||| || ||| |||||||||| |  ||||||||||||||| |  |||| || |||||| |||||||||||    
T  26830270 gtagaaattagagttgttctttgtgagcttgttgaagctaatttcttgtaatccatttgtatctctttgtaagaactcattgatagtggattggagagat 26830171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 28137555 - 28137456
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  ||| |||| | |||||||||||| ||| ||||||||||| | ||||||| ||||||| |  |||| || |||||| |||||||||||    
T  28137555 gtagaaattagggttgttctttgtgagcttgtttaagctaatttcttgtaacccatttgtatttctttgtaagaactcattgatagtggattggagagat 28137456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 425
Target Start/End: Complemental strand, 2171678 - 2171582
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactctttgtatctctttgttatgactctttcatagtgaattggagag 425  Q
    |||||||||||  ||| |||| | || |||||  || ||| ||||||||||| |||||||||||||||| |  |||| || |||||| |||||||||    
T  2171678 gtagaaattagggttgttctttgtgaacttgtcaaagctaatttcttgtaaccctttgtatctctttgtaagaactcattgatagtggattggagag 2171582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 427
Target Start/End: Complemental strand, 33160516 - 33160400
Alignment:
Q  312 gagagtggaaaataaatgtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttca 410  Q
    |||| ||| ||| ||| |||||||||||| ||| |||| | || |||||  || ||| ||||||||||||| ||||||||||||||| |  |||| || |    
T  33160516 gagattgggaaaaaaaggtagaaattagagttgttctttgtgaacttgtcaaagctaatttcttgtaactcttttgtatctctttgtaagaactcattga 33160417  T
Q  411 tagtgaattggagagat 427  Q
    | ||| |||||||||||    
T  33160416 tggtggattggagagat 33160400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 33831701 - 33831800
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    ||||||||||| |||| |||| | |||||||||||| ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||| ||||||    
T  33831701 gtagaaattaggtttgttctttgtgagcttgtttaagctaatttcttgtaacccatttgtatctctttgtaagaactcattgatagtggattgaagagat 33831800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 40147282 - 40147381
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||||| ||||||||||||||| |  |||| || |||||| |||||||||||    
T  40147282 gtagaaattagggttgttcttcgtgagcttgttgaagctaatttcttgtaactcatttgtatctctttgtaagaactcattgatagtggattggagagat 40147381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 397
Target Start/End: Original strand, 316783 - 316852
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaa-ctctttgtatctctttgt 397  Q
    ||||||||||| |||| |||||||||||||||| || ||| |||||||||| |  |||||||||||||||    
T  316783 gtagaaattaggtttgttcttggagagcttgttgaagctaatttcttgtaatccttttgtatctctttgt 316852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 213486 - 213585
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  213486 gtagaaattagggttgttctttgtgagcttgttaaagctaatttcttgtaacccatttgtatctctttgtaagaactcattgatagtggattggagagat 213585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 427
Target Start/End: Original strand, 16452125 - 16452200
Alignment:
Q  353 gagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    ||||||||| || ||| ||||||||||| | ||||||||||||||| |  |||| ||||||||| |||||||||||    
T  16452125 gagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaactcattcatagtggattggagagat 16452200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 397
Target Start/End: Original strand, 3325934 - 3326003
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactctt-tgtatctctttgt 397  Q
    ||||||||||| |||| ||||| |||||||||| || ||| |||||||||||  || |||||||||||||    
T  3325934 gtagaaattagttttgttcttgaagagcttgttgaagctaatttcttgtaaccattgtgtatctctttgt 3326003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 27637760 - 27637661
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc--tttgtatctctttgttatgactctttcatagtgaattggagaga 426  Q
    |||||||||||  ||| ||||   |||||||||||||||| ||||||||||| |  ||||||||||||||| |  |||| || |||||| ||||||||||    
T  27637760 gtagaaattagggttgttctttatgagcttgtttaaactaatttcttgtaacccattttgtatctctttgtaagaactcatt-atagtggattggagaga 27637662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 397
Target Start/End: Original strand, 35616190 - 35616259
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 397  Q
    ||||||||||| |||| |||||||||||| ||||||  || ||||||||||| | ||||||| |||||||    
T  35616190 gtagaaattaggtttgttcttggagagctcgtttaagttaatttcttgtaacccttttgtatttctttgt 35616259  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 397
Target Start/End: Complemental strand, 5887562 - 5887494
Alignment:
Q  330 tagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 397  Q
    ||||||||||||||| |||| | |||||||||||| ||| ||||||| ||| | |||||||| ||||||    
T  5887562 tagaaattagatttgttctttgtgagcttgtttaagctaatttcttgcaacccatttgtatcactttgt 5887494  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 424
Target Start/End: Complemental strand, 10054963 - 10054867
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactctttgtatctctttgttatg-actctttcatagtgaattggaga 424  Q
    ||||||||||  |||| ||||| |||| ||||| || ||| |||||| ||||  ||||||||||||||| ||| |||| || |||||| ||||||||    
T  10054963 gtagaaattatgtttgttcttgaagagtttgttgaagctaatttcttataaccttttgtatctctttgtaatgaactcattgatagtgtattggaga 10054867  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 427
Target Start/End: Original strand, 13239799 - 13239871
Alignment:
Q  356 cttgtttaaactattttcttgtaactcttt-gtatctctttgttatgactctttcatagtgaattggagagat 427  Q
    |||||| || ||| |||||||||||||||| |||||||||||| |  |||| || |||||| |||||||||||    
T  13239799 cttgttgaagctaatttcttgtaactcttttgtatctctttgtaagaactcattgatagtggattggagagat 13239871  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 397
Target Start/End: Complemental strand, 490468 - 490399
Alignment:
Q  329 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 397  Q
    ||||||||||  |||| |||||||||||||||| || ||| ||||||||||||| ||||||| |||||||    
T  490468 gtagaaattaagtttgttcttggagagcttgttgaagctaatttcttgtaactcttttgtatatctttgt 490399  T

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Target: scaffold0219 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 397
Target Start/End: Complemental strand, 27573 - 27521
Alignment:
Q  346 tcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 397  Q
    ||||| |||||||||| || ||| ||||||||||||| |||||||||||||||    
T  27573 tcttgaagagcttgttgaagctaatttcttgtaactcatttgtatctctttgt 27521  T

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