View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15514_low_14 (Length: 388)
Name: NF15514_low_14
Description: NF15514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15514_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 32671842 - 32671493
Alignment:
| Q |
1 |
cttcttaaattcttagtttgtaaagaataagatcatgcatacataatgtgatagcacgttatatcagcatgaaacacataaaaaagaattttgattgcat |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
32671842 |
cttcttaaattcctagtttgtaaagaataagatcatgcatacataatgtgatagcacgttatatcagcatgaaacacttaaaaaagaatgttgattgcat |
32671743 |
T |
|
| Q |
101 |
cataaagtcatagttacaaagtttcttgactgctacttcaaatgcgactaatgccaaacaaaacaaagtaagtgacccaattgaagaacaatggaacaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32671742 |
cataaagtcatagttacaaagtttctttactgctacttcaaatgcgactaatgccaaacaaaacaaagtaagtgacccaattgaagaacaatgaaacaga |
32671643 |
T |
|
| Q |
201 |
acaatcatcatacaagaatcaaataatctttgatatttaactactacactattttgaccttcaccaacttcgtcttcgagtgcacgacaccacattttcg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32671642 |
acaatcatcatacaagaatcaaataatctttgatatttaactactacactattttgaccttcaccaacttcgtcttcgagtgcacgacaccacattttcg |
32671543 |
T |
|
| Q |
301 |
tgatattaattgtcgtctttaagtcttgtatgtaaagctctcacggttta |
350 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
32671542 |
tgatattaattgtcggctttaggtcttgtatgtaaagctctcacggttta |
32671493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University