View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15514_low_2 (Length: 723)
Name: NF15514_low_2
Description: NF15514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15514_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 205 - 602
Target Start/End: Complemental strand, 24566643 - 24566246
Alignment:
| Q |
205 |
cataacaagttaccttctttatcttatggaagtatccatcacgtgaacatatttgatttgacaattgacgggtaacagatatggacaagatacgatttat |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24566643 |
cataacaagttaccttctttatcttatggaagtatccatcacgtgaacatatttgatttgacaattgacgggtaacagatatggacaagatacgatttat |
24566544 |
T |
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| Q |
305 |
gaaattacgatcacttgaattgatgaaactgaattttatcaagttgtttttctgtgtgtttataatcaatataattgacatgttcaattaacccactcga |
404 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24566543 |
gaaattatgatcacttgaattgatgaaactgaattttatcaagttgttttcctgtgtgtttataatcaatataattgacatgttcaattaacccactcga |
24566444 |
T |
|
| Q |
405 |
gcacctacattccatatcgtcttctgcataatatgtggattggatgggtatttgcaaaaattatttttagtttgagaatgagaaagataaacaattgtac |
504 |
Q |
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| T |
24566443 |
gcacctacattccatatcgtcttctgcataatatgtggattggatgggtatttgcaaaaattatttttagtttgagaatgagaaagataaacaattgtac |
24566344 |
T |
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| Q |
505 |
taaaaaagtttctttatgattaaatgtttctttcatgcaatagtctttcttatcaagcatgtatcacgagtgtagaagactatactgatcattgggtt |
602 |
Q |
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| T |
24566343 |
taaaaaagtttctttatgattaaatgtttctttcatgcaatagtctttcttatcaagcatgtatcacgagtgtagaagactatactgatcattgggtt |
24566246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 615 - 689
Target Start/End: Complemental strand, 24565336 - 24565262
Alignment:
| Q |
615 |
cttataattcaaaatagaaaaatattataagtttttattcttcaagatattacttttttaagatttgacaattat |
689 |
Q |
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| T |
24565336 |
cttataattcaaaatagaaaaatattataagtttttattcttcaagatattacttttttaagatttgacaattat |
24565262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 24566815 - 24566719
Alignment:
| Q |
34 |
cagtctggctcaagattttgtttacnnnnnnnn-cctcttttctaaacaaattccacaaatagggcgacaatgcagaaaccatccacgagagagaga |
129 |
Q |
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| T |
24566815 |
cagtctggctcaagattttgtttactttttttttcctattttctaaacaaattccacaaatagggcgacaatgcagaaaccatccacgagagagaga |
24566719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 1e-58; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 425 - 680
Target Start/End: Original strand, 45532545 - 45532795
Alignment:
| Q |
425 |
cttctgcataatatgtggattggatgggtatttgcaaaaattatttttagtttgagaatgagaaagataaacaattgtactaaaaaagtttctttatgat |
524 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||| || |||||||||||||||| |||||||||| ||||||||||||||| | |||| |
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| T |
45532545 |
cttctgcataatatgtggattggatatgtattttaaaaaattatttataatttgagaatgagaaaggtaaacaattgaactaaaaaagtttctctgtgat |
45532644 |
T |
|
| Q |
525 |
taaatgtttctttcatgca--atagtctttcttatcaagcatgtatcacgagtgtagaagactatactgatcattgggttataatatgaccacttataat |
622 |
Q |
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| T |
45532645 |
gaaatgcttctttcatgtattagagactttcatatcaagcatgtatcacgaatgtagaa----atactcatcattgggttataatatgaccaattataat |
45532740 |
T |
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| Q |
623 |
tcaaaatagaaaaatattataagtttttattcttcaagatattacttttttaagattt |
680 |
Q |
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||||||| |||| ||| |||||||||||||| |||||||||| |||| ||||||| |
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| T |
45532741 |
tcaaaat---aaaaaatttgaagtttttattcttaaagatattacattttaaagattt |
45532795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 363 - 689
Target Start/End: Complemental strand, 44339720 - 44339384
Alignment:
| Q |
363 |
tttataatcaatataattgacatgttcaattaacccactcgagcacctacattccatatcgtcttctgcataatatgtggattggatgggtatttgcaaa |
462 |
Q |
| |
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|||| ||||||||||| | | || ||||||||| ||||| |||||| ||||| || ||||||| ||| ||||||| || ||||| |||||||||| |
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| T |
44339720 |
tttaaaatcaatataaataatatattcaattaaatcactccagcaccaacattttatgctgtcttctacatgatatgtgaatcagatggatatttgcaaa |
44339621 |
T |
|
| Q |
463 |
aattatttttagtttgagaatgagaaagataaacaattgtactaaaaaagtttctttatgattaaatgtttctttcatgcaatag----tctttcttatc |
558 |
Q |
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|| || || ||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| |||| |||| |
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| T |
44339620 |
aactacttacagtttgagaataagaaagataaacaattgtactaaaaaagcttctttgtgattaaatgcttctttcatgcaatagagacactttgatatc |
44339521 |
T |
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| Q |
559 |
aagc--atgtatcacgagtgtag-------aagactatactgatcattgggttataatatgaccacttataattcaaaatagaaaaatattataagtttt |
649 |
Q |
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|| | || |||||||||| ||| ||||||| ||| ||||||| ||||||||||||||| |||||||||||| || ||| |||| |||||| |
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| T |
44339520 |
aaacatatatatcacgagtttagaagactcaagactacactcatcattgagttataatatgaccaattataattcaaagtataaa---attagcagtttt |
44339424 |
T |
|
| Q |
650 |
tattcttcaagatattacttttttaagatttgacaattat |
689 |
Q |
| |
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||||||||| |||||| ||||||| ||||||||||||||| |
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| T |
44339423 |
tattcttcatgatatttctttttttagatttgacaattat |
44339384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 363 - 547
Target Start/End: Original strand, 44335247 - 44335431
Alignment:
| Q |
363 |
tttataatcaatataattgacatgttcaattaacccactcgagcacctacattccatatcgtcttctgcataatatgtggattggatgggtatttgcaaa |
462 |
Q |
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|||| ||||||||||| | | || ||||||||| ||||| |||||||||||| || ||||| ||||| ||||||| || |||| |||||||||| |
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| T |
44335247 |
tttaaaatcaatataaataatatattcaattaaatcactccagcacctacattttatgatgtcttatgcatgatatgtgaatcagatgaatatttgcaaa |
44335346 |
T |
|
| Q |
463 |
aattatttttagtttgagaatgagaaagataaacaattgtactaaaaaagtttctttatgattaaatgtttctttcatgcaatag |
547 |
Q |
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|| || || ||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| |
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| T |
44335347 |
aactacttacagtttgagaataagaaagataaacaattgtactaaaaaagcttctttgtgattaaatgcttctttcatgcaatag |
44335431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 314 - 394
Target Start/End: Original strand, 45532459 - 45532540
Alignment:
| Q |
314 |
atcacttgaattgatgaaactgaattttatcaagttgtttttctgtgtg-tttataatcaatataattgacatgttcaatta |
394 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||| |||| ||||||| |||| ||||||| ||||||||||||||||||| |
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| T |
45532459 |
atcacttgaatttatgaaactgaattttatcaagtttttttcctgtgtgttttaaaatcaatctaattgacatgttcaatta |
45532540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 600 - 689
Target Start/End: Original strand, 44335504 - 44335590
Alignment:
| Q |
600 |
gttataatatgaccacttataattcaaaatagaaaaatattataagtttttattcttcaagatattacttttttaagatttgacaattat |
689 |
Q |
| |
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|||||||||| |||| |||||||||||| || |||| ||| ||||||||||||||| |||||| ||||||| ||||||||||||||| |
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| T |
44335504 |
gttataatattaccagttataattcaaagtataaaa---ttagcagtttttattcttcatgatatttctttttttagatttgacaattat |
44335590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 44340029 - 44339976
Alignment:
| Q |
72 |
tttctaaacaaattccacaaatagggcgacaatgcagaaaccatccacgagaga |
125 |
Q |
| |
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||||||||||||||||| |||||||| ||| |||||||||||||||| |||||| |
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| T |
44340029 |
tttctaaacaaattccagaaatagggggacgatgcagaaaccatccatgagaga |
44339976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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