View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15514_low_22 (Length: 324)
Name: NF15514_low_22
Description: NF15514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15514_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 15812446 - 15812144
Alignment:
| Q |
1 |
ccaaaacccacacaaccagcatattccattggcagaaagtccaagaatgaagatcaaagttcaaaaaattctaaggataattctgttgatgaagaaacct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15812446 |
ccaaaacccacacaaccagcatattccattggcagaaagtcgaagaatgaagatcaaagttcaaaaaattctaaggataattctgttgatgaagaaaccc |
15812347 |
T |
|
| Q |
101 |
taactattgtttcacctagatagttgacaatatcgttcactttatagaagatttgaaaatatgtttggactcctttagaaaaagtttgaatccaaaaaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
15812346 |
taactattgtttcacctagatagttgacaatatcgttcactttatagaagattcgaaaatatgtttggactc---aagaaaaagtttgaatccaaaaaag |
15812250 |
T |
|
| Q |
201 |
aaacaaacattttaaaggtccaaaggatatattcatattgactactaacaaactttgaggttatgattatccaattccagcacatcttaatttggatcgc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15812249 |
aaacaaacattttaaaggtccaaaggatatattcatattgactactaacaaac-ttgaggttatgattatccaattccagcacatcttaatttggatcgc |
15812151 |
T |
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| Q |
301 |
tatttgt |
307 |
Q |
| |
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||||||| |
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| T |
15812150 |
tatttgt |
15812144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 15799043 - 15798908
Alignment:
| Q |
4 |
aaacccacacaaccagcatattccattggcagaaagtccaagaatgaagatcaaagttcaaaaaattctaaggataattctgttgatgaagaaaccttaa |
103 |
Q |
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|||||||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15799043 |
aaacccacgcaaccagcattttcagttggcagaaagtccaagaatgaagatcaaatttcaaaaaattctaaggataattctgttgatgaagaaaccataa |
15798944 |
T |
|
| Q |
104 |
ctattgtttcacctagatagttgacaatatcgttca |
139 |
Q |
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| T |
15798943 |
ctattgtttcacctagatagttgacattatggttca |
15798908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 15804660 - 15804537
Alignment:
| Q |
1 |
ccaaaacccacacaaccagcatattccattggcagaaagtccaagaatgaagatcaaagttcaaaaaattctaaggataattctgttgatgaagaaacct |
100 |
Q |
| |
|
||||||||||| |||||||||| ||| |||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15804660 |
ccaaaacccacgcaaccagcattttcagttggtagaaaacccaagaatgaagatcaaagttcaaaaaattataaggataattctgttgatgaagaaacta |
15804561 |
T |
|
| Q |
101 |
taactattgtttcacctagatagt |
124 |
Q |
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|||||||||||||||||||||||| |
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| T |
15804560 |
taactattgtttcacctagatagt |
15804537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 15763616 - 15763502
Alignment:
| Q |
13 |
caaccagcatattccattggcagaaagtccaagaatgaagatcaaagttcaaaaaattctaaggata---attctgttgatgaagaaaccttaactattg |
109 |
Q |
| |
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|||||||||| ||| |||| |||| |||||||||||| ||||||| |||||||| ||| ||||||| |||| |||||||||| ||| ||||||||| |
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| T |
15763616 |
caaccagcattttcagttgggagaatgtccaagaatgatgatcaaacttcaaaaacttccaaggataattattcggttgatgaagtaactctaactattg |
15763517 |
T |
|
| Q |
110 |
tttcacctagatagt |
124 |
Q |
| |
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||||||||||||||| |
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| T |
15763516 |
tttcacctagatagt |
15763502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 297
Target Start/End: Complemental strand, 15763178 - 15763117
Alignment:
| Q |
235 |
atattgactactaacaaactttgaggttatgattatccaattccagcacatcttaatttggat |
297 |
Q |
| |
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||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||| |
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|
| T |
15763178 |
atattgactactaacaaactt-gaagttatgattatccaattccactacatcttaatttggat |
15763117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 15696430 - 15696366
Alignment:
| Q |
63 |
aaaaaattctaaggataattctgttgatgaagaaaccttaactattgtttcacctagatagttga |
127 |
Q |
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||||| || ||||||||||| ||||||||||| | || ||||||||||||| ||||||||||||| |
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| T |
15696430 |
aaaaagttataaggataattatgttgatgaagtacccataactattgtttcgcctagatagttga |
15696366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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