View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15514_low_23 (Length: 317)

Name: NF15514_low_23
Description: NF15514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15514_low_23
NF15514_low_23
[»] scaffold0063 (1 HSPs)
scaffold0063 (1-303)||(50763-51064)
[»] scaffold0351 (4 HSPs)
scaffold0351 (6-114)||(444-550)
scaffold0351 (50-114)||(5780-5844)
scaffold0351 (113-165)||(7805-7857)
scaffold0351 (113-165)||(17951-18003)
[»] scaffold0002 (4 HSPs)
scaffold0002 (50-114)||(114506-114570)
scaffold0002 (113-233)||(113709-113828)
scaffold0002 (113-231)||(96693-96810)
scaffold0002 (10-89)||(96524-96602)
[»] chr5 (1 HSPs)
chr5 (238-303)||(16907736-16907801)
[»] scaffold0263 (2 HSPs)
scaffold0263 (6-114)||(17472-17579)
scaffold0263 (119-164)||(17697-17742)


Alignment Details
Target: scaffold0063 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 51064 - 50763
Alignment:
Q  1 tgtgttacatgtttaagttttttgacacatattgtatgaccgtcatacaaaatataagacaccgattcaaggagtgtaaaagcaaaaaataataataaat 100  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  51064 tgtgttacatgtttaagttttctgacacatgttgtatgaccgtcatacaaa-tataagacaccgattcaaggagtgtaaaagcaaaaaataataatcaat 50966  T
Q  101 ttttgggacaccgatggataggatctcaatctctacgtaaaatcaatcattactaacaataattggagtgtaaaatcaatctcaatctccaatagtgcaa 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  50965 ttttggaacaccgatggataggatctcaatctctacgtaaaatcaatcattactaataataattggagtgtaaaatcaatctcaatctccaatagtgcaa 50866  T
Q  201 gccgtatgtttgagttaatgtttgatgatgatcccagcccaatgacagatctaggaatttcgagtagtgaaggcaatatatgcgaataaatatcaaacaa 300  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  50865 gccgtatgtttgagttaatgcttgatgatgatctcagcccaatgacagatctaggaatttcgagtagtgaagacaatatatgcgtataaatatcaaacaa 50766  T
Q  301 tac 303  Q
    |||    
T  50765 tac 50763  T

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Target: scaffold0351 (Bit Score: 57; Significance: 8e-24; HSPs: 4)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 444 - 550
Alignment:
Q  6 tacatgtttaagttttttgacacatattgtatgaccgtcatacaaaatataagacaccgattcaaggagtgtaaaagcaaaaaataataataaatttttg 105  Q
    ||||||||| |||||| ||||||||   |||| ||| ||||||||| ||| |||||| || |||||||||||||||||||||||||||||||||||||||    
T  444 tacatgtttgagttttctgacacatgc-gtataaccttcatacaaa-tatcagacactgactcaaggagtgtaaaagcaaaaaataataataaatttttg 541  T
Q  106 ggacaccga 114  Q
    |||||||||    
T  542 ggacaccga 550  T

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Target: scaffold0351; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 5780 - 5844
Alignment:
Q  50 aaatataagacaccgattcaaggagtgtaaaagcaaaaaataataataaatttttgggacaccga 114  Q
    |||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5780 aaatataagatactcattcaaggagtgtaaaagcaaaaaataataataaatttttgggacaccga 5844  T

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Target: scaffold0351; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 7805 - 7857
Alignment:
Q  113 gatggataggatctcaatctctacgtaaaatcaatcattactaacaataattg 165  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  7805 gatggataggatctcaatctctacgtaatatcaataattactaacaataattg 7857  T

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Target: scaffold0351; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 17951 - 18003
Alignment:
Q  113 gatggataggatctcaatctctacgtaaaatcaatcattactaacaataattg 165  Q
    ||||||||| ||||||||||||| |||| |||||| |||||||||||||||||    
T  17951 gatggatagaatctcaatctctatgtaatatcaataattactaacaataattg 18003  T

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Target: scaffold0002 (Bit Score: 57; Significance: 8e-24; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 114570 - 114506
Alignment:
Q  50 aaatataagacaccgattcaaggagtgtaaaagcaaaaaataataataaatttttgggacaccga 114  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  114570 aaatataagacactcattcaaggagtgtaaaagcaaaaaataataataaatttttgggacaccga 114506  T

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Target: scaffold0002; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 233
Target Start/End: Complemental strand, 113828 - 113709
Alignment:
Q  113 gatggataggatctcaatctctacgtaaaatcaatcattactaacaataattggagtgtaaaatcaatctcaatctccaatagtgcaagccgtatgtttg 212  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||| |||  ||| |  |   ||  ||||||| |||||||||||||||||||    
T  113828 gatggataggatctcaatctctacgtaatatcaataattactaacaataatt-gaggataatagtagcatctttctccaacagtgcaagccgtatgtttg 113730  T
Q  213 agttaatgtttgatgatgatc 233  Q
    ||| |||| ||||||||||||    
T  113729 agtcaatgcttgatgatgatc 113709  T

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Target: scaffold0002; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 231
Target Start/End: Original strand, 96693 - 96810
Alignment:
Q  113 gatggataggatctcaatctctacgtaaaatcaatcattactaacaataattggagtgtaaaatcaatctcaatctccaatagtgcaagccgtatgtttg 212  Q
    ||||||||| |||||||||||||||||| |||||| |||||||||||||||| |||  ||| |  |   ||  |||||||  ||||| ||||||||||||    
T  96693 gatggatagaatctcaatctctacgtaatatcaataattactaacaataatt-gaggataatagtagcatccttctccaacggtgcatgccgtatgtttg 96791  T
Q  213 agttaatgtttgatgatga 231  Q
    ||||||||||| |||||||    
T  96792 agttaatgtttaatgatga 96810  T

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Target: scaffold0002; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 96524 - 96602
Alignment:
Q  10 tgtttaagttttttgacacatattgtatgaccgtcatacaaaatataagacaccgattcaaggagtgtaaaagcaaaaaa 89  Q
    ||||| |||||| ||| |||| |||||||| ||||||||||| ||| |||| |  |||||||||||||||||||||||||    
T  96524 tgtttgagttttctgaaacatgttgtatgatcgtcatacaaa-tatcagactctaattcaaggagtgtaaaagcaaaaaa 96602  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 303
Target Start/End: Original strand, 16907736 - 16907801
Alignment:
Q  238 cccaatgacagatctaggaatttcgagtagtgaaggcaatatatgcgaataaatatcaaacaatac 303  Q
    |||| |||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||    
T  16907736 cccagtgacagatctaggaatttcgagtagtgggggcaatatatgcgtataaatatcaaacaatac 16907801  T

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Target: scaffold0263 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 17472 - 17579
Alignment:
Q  6 tacatgtttaagttttttgacacatattgtatgaccgtcatacaaaatataagacaccgattcaaggagtgtaaaagcaaaaaataataataaatttttg 105  Q
    ||||||||| |||||| | | |||| || |||||| |||||||||| ||| |||||| |||| || ||||||||||| |||| ||||||||||| |||||    
T  17472 tacatgtttgagttttcttatacatgttatatgacagtcatacaaa-tatcagacactgattaaacgagtgtaaaagtaaaacataataataaacttttg 17570  T
Q  106 ggacaccga 114  Q
    |||||||||    
T  17571 ggacaccga 17579  T

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Target: scaffold0263; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 17697 - 17742
Alignment:
Q  119 taggatctcaatctctacgtaaaatcaatcattactaacaataatt 164  Q
    |||||||||||||| ||||||| |||||| ||||||||||||||||    
T  17697 taggatctcaatctttacgtaatatcaataattactaacaataatt 17742  T

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