View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15514_low_24 (Length: 311)
Name: NF15514_low_24
Description: NF15514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15514_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 33378183 - 33378481
Alignment:
| Q |
1 |
cagcaaattctttggactgtgagattctgatgaaatttcagttcccttctttagatacaaaagatagaagctacattaagggaagcattgaaagcacgcg |
100 |
Q |
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| T |
33378183 |
cagcaaattctttggactgtgagattctgatgaaatttcagttcccttctttagatacaaaagatagaagctacattaagggaagcattgaaagcacgcg |
33378282 |
T |
|
| Q |
101 |
cccaaaatccgatcctctttacttcaacagtttagaggtatctgcggtagcgtattacattcaagaagcgagaagaaatgtttggagaatggatatggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
33378283 |
cccaaaatccgatcctctttacttcaacagtttagaggtatctgcggtagcgtattacattcaagaagtgagaagaaatgtttggagaacggatatggaa |
33378382 |
T |
|
| Q |
201 |
gttatcatggctctgatatctacaactctagcatgtgttttcgtcggattgcaactcaaccatgtgaagagaaaccctaatgtgcttcccttcatctca |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33378383 |
gttatcatggctctgatatctacaactctagcatgtgttttcgtcggattgcaactcaaccatgtgaagagaaaccctaatgtgcttcccttcatctca |
33378481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 179 - 301
Target Start/End: Original strand, 33384502 - 33384624
Alignment:
| Q |
179 |
tgtttggagaatggatatggaagttatcatggctctgatatctacaactctagcatgtgttttcgtcggattgcaactcaaccatgtgaagagaaaccct |
278 |
Q |
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||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| | || || |
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| T |
33384502 |
tgtttggagaatggatatggagattatcatggttctgatatctacaactctagcatgtgttttcgtcggattgcaactataccatgtcaagaaacacact |
33384601 |
T |
|
| Q |
279 |
aatgtgcttcccttcatctcagt |
301 |
Q |
| |
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| T |
33384602 |
aatgtgcttcccttcatctcagt |
33384624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 179 - 301
Target Start/End: Complemental strand, 26790811 - 26790689
Alignment:
| Q |
179 |
tgtttggagaatggatatggaagttatcatggctctgatatctacaactctagcatgtgttttcgtcggattgcaactcaaccatgtgaagagaaaccct |
278 |
Q |
| |
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||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||| | ||||| |
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| T |
26790811 |
tgtttggagaacggatatggagattatcatggttctgatatctacaactctagcatgtgttttcgtcggcctgcaactataccatgtcaagaaacaccct |
26790712 |
T |
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| Q |
279 |
aatgtgcttcccttcatctcagt |
301 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
26790711 |
aatgtgcttcccttcatctcagt |
26790689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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