View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15514_low_25 (Length: 305)

Name: NF15514_low_25
Description: NF15514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15514_low_25
NF15514_low_25
[»] chr6 (3 HSPs)
chr6 (45-222)||(4831065-4831244)
chr6 (57-141)||(4832549-4832634)
chr6 (206-295)||(4830962-4831051)


Alignment Details
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 45 - 222
Target Start/End: Complemental strand, 4831244 - 4831065
Alignment:
Q  45 attcaatgttgttgggtgttctgttttgaagccctttgaaattgattggatcttgtgtaatcaatgggctgaata--tctcaagttattttcaattaatg 142  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||     
T  4831244 attcaatgttgttgggtgttctcttttgaagccctttgaaattgattggatcttgtgtgatcaatgggctgaataaatctcaagttattttcaattaatt 4831145  T
Q  143 ttggattccaattgcatatagtcactaattcccacattcttgccatcaatattttcattgttgttttatcaagatataat 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4831144 ttggattccaattgcatatagtcactaattcccacattcttgccatcaatattttcattgttgttttatcaagatataat 4831065  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 57 - 141
Target Start/End: Complemental strand, 4832634 - 4832549
Alignment:
Q  57 tgggtgttctgttttgaagccctttgaaattgattggatcttgtgtaatcaatgggctgaat--atctcaagttattttcaattaat 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||  |||||||||| ||||||||||||    
T  4832634 tgggtgttctgttttgaagccctttgaaattgattggatcttgtgtgatcaat-ggctgaataaatctcaagttgttttcaattaat 4832549  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 295
Target Start/End: Complemental strand, 4831051 - 4830962
Alignment:
Q  206 ttttatcaagatataatggcgcagaaaacaaacaaagtttgannnnnnnnnnnaactctaacttattgaggttgaaatacataacctatg 295  Q
    ||||||| ||||||||||||||||||||||||||||||||||           || | ||||||||||||||||||||||||| ||||||    
T  4831051 ttttatctagatataatggcgcagaaaacaaacaaagtttgattattttttttaattataacttattgaggttgaaatacataccctatg 4830962  T

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