View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15514_low_26 (Length: 300)
Name: NF15514_low_26
Description: NF15514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15514_low_26 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 3 - 300
Target Start/End: Complemental strand, 39316088 - 39315791
Alignment:
| Q |
3 |
taacactcctagccttcccttttgccctccacctaaggaccaacaaggtgaaaacaaggtccaactttttgacttcaccttactgcaaaaagaaggaaat |
102 |
Q |
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| T |
39316088 |
taacactcctagccttccctttttccctccacctaaggaccaacaaggtgaaaacaaggtccaattttttgacttcaccttactgcaaaaagaaggaaat |
39315989 |
T |
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| Q |
103 |
gtaccaaaagagttcatttggccttctgagcattgggtgaaaagcagtggagaaaatattgagctacctcttattgacataggtgtcatcaagagtgatg |
202 |
Q |
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| T |
39315988 |
gtaccaaaagagttcatttggccttctgagcattgggtgaaaagcagtggagaaaatattgagctacctcttattgacataggtgtcatcaagagtgatg |
39315889 |
T |
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| Q |
203 |
aggctgcaatggccaatgctgctaggattgtgagggaggcatgcataaaacatggtgcctttgaagtcactaacattggtgtggattcagatttcatc |
300 |
Q |
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| T |
39315888 |
aggctgcaatggctaatgctgctaggattgtgagggaggcatgcataaaacatggtgcctttgaagtcactaacattggtgtggattcagatttcatc |
39315791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 3 - 264
Target Start/End: Complemental strand, 39328882 - 39328622
Alignment:
| Q |
3 |
taacactcctagccttcccttttgccctccacctaaggaccaacaaggtgaaaacaaggtccaactttttgacttcaccttactgcaaaaagaaggaaat |
102 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39328882 |
taacactcctagccttccctttttccctccacctaaggaccaacaaggtgaaaacaaggtccaattttttgacttcaccttactgcaaaaagaaggaaat |
39328783 |
T |
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| Q |
103 |
gtaccaaaagagttcatttggccttctgagcattgggtgaaaagcagtggagaaaatattgagctacctcttattgacataggtgtcatcaagagtgatg |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39328782 |
gtaccaaaagagttcatttggccttctgagcattgggtgaaaagcagtggagaaaatattgagctacctcttattgacataggtgtcatcaagagtgatg |
39328683 |
T |
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| Q |
203 |
aggctgcaatggccaatgctgctaggattgtgagggaggcatgcataaaacatggtgccttt |
264 |
Q |
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| T |
39328682 |
aggctgcaatggccaatgctgctaggattgtgaggga-gcatgcataaaacatggtgccttt |
39328622 |
T |
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