View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15514_low_27 (Length: 299)
Name: NF15514_low_27
Description: NF15514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15514_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 119; Significance: 8e-61; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 165 - 287
Target Start/End: Complemental strand, 39620149 - 39620027
Alignment:
| Q |
165 |
gatatgtgataaaagagaattccaatatggtggagatggttttaccgggcaaatccaatggcatggagtttgaatggattggtggcttcacaatttggag |
264 |
Q |
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| T |
39620149 |
gatatgtgataaaagagaattccaatatggtggagatggttttactgggcaaatccaatggcatggagtttgaatggattggtggcttcacaatttggag |
39620050 |
T |
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| Q |
265 |
gtataaaagatcatattgagtat |
287 |
Q |
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| T |
39620049 |
gtataaaagatcatattgagtat |
39620027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 39620294 - 39620214
Alignment:
| Q |
20 |
ctatgtattatggaatcttttctcaggaactgttgtcccaccaccagtaagtttttacttcctttaatgataagtgataag |
100 |
Q |
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| T |
39620294 |
ctatgtattatggaatcttttctcaggaactgttgtcccaccaccagtaagtttttacttcctttaatgataagtgataag |
39620214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 39340842 - 39340895
Alignment:
| Q |
211 |
gggcaaatccaatggcatggagtttgaatggattggtggcttcacaatttggag |
264 |
Q |
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| T |
39340842 |
gggcaaatccaatggcatggagtttgtatggattggcggcttcacaatatggag |
39340895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 39355650 - 39355703
Alignment:
| Q |
211 |
gggcaaatccaatggcatggagtttgaatggattggtggcttcacaatttggag |
264 |
Q |
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| T |
39355650 |
gggcaaatccaatagcgtggagtttgtatggattggtggcttcacaatatggag |
39355703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 39545260 - 39545207
Alignment:
| Q |
211 |
gggcaaatccaatggcatggagtttgaatggattggtggcttcacaatttggag |
264 |
Q |
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|||| |||||| |||| ||||||||| ||||||||||||||||||||| ||||| |
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| T |
39545260 |
gggccaatccagtggcttggagtttgtatggattggtggcttcacaatatggag |
39545207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 39562092 - 39562039
Alignment:
| Q |
211 |
gggcaaatccaatggcatggagtttgaatggattggtggcttcacaatttggag |
264 |
Q |
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| T |
39562092 |
gggcaaatccaatagcgtggagtttgtatggattggtggtttcacaatatggag |
39562039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 39368395 - 39368448
Alignment:
| Q |
211 |
gggcaaatccaatggcatggagtttgaatggattggtggcttcacaatttggag |
264 |
Q |
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||||||||||| ||||||||||||| | ||||||||| ||||||||| ||||| |
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| T |
39368395 |
gggcaaatccagtggcatggagtttatacggattggtgacttcacaatatggag |
39368448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 39535898 - 39535845
Alignment:
| Q |
211 |
gggcaaatccaatggcatggagtttgaatggattggtggcttcacaatttggag |
264 |
Q |
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||||||||||| ||||||||||||| | ||||||||| ||||||||| ||||| |
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| T |
39535898 |
gggcaaatccagtggcatggagtttatacggattggtgacttcacaatatggag |
39535845 |
T |
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