View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15514_low_29 (Length: 256)

Name: NF15514_low_29
Description: NF15514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15514_low_29
NF15514_low_29
[»] chr2 (8 HSPs)
chr2 (71-249)||(1499181-1499357)
chr2 (103-203)||(28219057-28219156)
chr2 (103-202)||(44246371-44246469)
chr2 (81-203)||(10354294-10354415)
chr2 (103-203)||(7444669-7444767)
chr2 (70-187)||(28199172-28199289)
chr2 (78-189)||(17999914-18000024)
chr2 (2-31)||(7894204-7894233)
[»] scaffold0127 (1 HSPs)
scaffold0127 (71-203)||(30097-30228)
[»] chr1 (8 HSPs)
chr1 (71-203)||(41404107-41404238)
chr1 (81-203)||(48046437-48046558)
chr1 (103-203)||(15581605-15581704)
chr1 (70-189)||(7741157-7741277)
chr1 (103-203)||(42365921-42366020)
chr1 (87-201)||(34969816-34969928)
chr1 (73-203)||(42934258-42934387)
chr1 (70-127)||(7521234-7521291)
[»] chr3 (10 HSPs)
chr3 (81-203)||(39439829-39439950)
chr3 (70-203)||(25045411-25045543)
chr3 (106-203)||(27011220-27011316)
chr3 (70-187)||(32278412-32278529)
chr3 (103-203)||(42029276-42029375)
chr3 (107-183)||(14567902-14567978)
chr3 (70-165)||(44713301-44713395)
chr3 (90-148)||(40024828-40024886)
chr3 (70-189)||(23420280-23420400)
chr3 (103-183)||(25909400-25909480)
[»] chr4 (11 HSPs)
chr4 (97-203)||(31227737-31227841)
chr4 (71-201)||(41809851-41809980)
chr4 (81-203)||(35292084-35292205)
chr4 (103-203)||(22405075-22405174)
chr4 (70-203)||(35033775-35033907)
chr4 (81-189)||(50859219-50859327)
chr4 (106-203)||(46944085-46944181)
chr4 (102-183)||(48084740-48084821)
chr4 (103-203)||(41223652-41223752)
chr4 (106-189)||(21263577-21263660)
chr4 (141-203)||(3121267-3121328)
[»] chr5 (8 HSPs)
chr5 (70-203)||(30084939-30085071)
chr5 (81-203)||(11617273-11617394)
chr5 (86-187)||(5247867-5247968)
chr5 (103-203)||(4943566-4943665)
chr5 (76-183)||(31933459-31933565)
chr5 (76-187)||(9159488-9159601)
chr5 (91-189)||(29293215-29293312)
chr5 (5-33)||(40339543-40339571)
[»] scaffold0022 (2 HSPs)
scaffold0022 (70-203)||(44077-44209)
scaffold0022 (70-203)||(77798-77930)
[»] chr7 (6 HSPs)
chr7 (70-190)||(36657560-36657680)
chr7 (70-187)||(261707-261824)
chr7 (70-189)||(12633476-12633598)
chr7 (103-203)||(19625456-19625555)
chr7 (103-185)||(23417207-23417289)
chr7 (72-183)||(35759791-35759902)
[»] scaffold0224 (1 HSPs)
scaffold0224 (73-203)||(12384-12513)
[»] scaffold0110 (1 HSPs)
scaffold0110 (70-202)||(38531-38662)
[»] chr8 (4 HSPs)
chr8 (81-189)||(38679793-38679900)
chr8 (77-147)||(28873675-28873745)
chr8 (103-203)||(34924732-34924832)
chr8 (153-189)||(30800234-30800270)
[»] scaffold0039 (1 HSPs)
scaffold0039 (103-189)||(56968-57054)


Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 71 - 249
Target Start/End: Original strand, 1499181 - 1499357
Alignment:
Q  71 agggacaaaattgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatg 170  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1499181 agggacaaaattgtaattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtattggatg 1499280  T
Q  171 gaatgagttccatcacacttgcattccattccannnnnnnnnnatacaaaaccaaacaatagaatgtggcttcatctca 249  Q
    |||||| ||||||||||| ||||||||||||||          |||||||| |||||||||||||||||||||||||||    
T  1499281 gaatgaattccatcacac-tgcattccattcca-tttttttttatacaaaagcaaacaatagaatgtggcttcatctca 1499357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 28219156 - 28219057
Alignment:
Q  103 ttccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatgagttccatcacacttgcattccattcc 202  Q
    ||||||||||||||||||||| ||||||||| | ||| ||||||||   |||||| ||||||| ||||||||| |||||||||||| | |||||||||||    
T  28219156 ttccattccattggatacaccccaaattgggtggaatgaaaaattgaaggaatgagtggtattggatggaatgggttccatcacac-tccattccattcc 28219058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 202
Target Start/End: Complemental strand, 44246469 - 44246371
Alignment:
Q  103 ttccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatgagttccatcacacttgcattccattcc 202  Q
    ||||||||||||||||||||| ||||||||  | ||| ||||||||   |||||| ||||||| |||||||||||||||||||||| | |||||||||||    
T  44246469 ttccattccattggatacaccccaaattggatggaatgaaaaattgaaagaatgagtggtattggatggaatgagttccatcacac-tccattccattcc 44246371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 203
Target Start/End: Complemental strand, 10354415 - 10354294
Alignment:
Q  81 ttgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatgagttc 180  Q
    |||| ||||||||||  ||| ||||||||||||||||||||||| || ||||||| ||| |||| |||| | ||||  ||||||| |||||||||||||     
T  10354415 ttgtcattgtattatttatgtattccattccattggatacaccttaatttggggggaatgaaaatttggcttaatgggtggtattggatggaatgagttt 10354316  T
Q  181 catcacacttgcattccattcca 203  Q
    |||| ||| | ||||||||||||    
T  10354315 catcgcac-tccattccattcca 10354294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 7444669 - 7444767
Alignment:
Q  103 ttccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatgagttccatcacacttgcattccattcc 202  Q
    ||||||||||| ||||||   |||| ||||||||| || |||||||||| ||||| ||||||| ||||||||| |||||||||||| | |||||||||||    
T  7444669 ttccattccatcggatacctttcaatttgggggaa-tagaaaattggttaaatgagtggtattggatggaatgggttccatcacac-tccattccattcc 7444766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 187
Target Start/End: Original strand, 28199172 - 28199289
Alignment:
Q  70 tagggacaaaattgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgat 169  Q
    |||||| |||| ||| ||||  |||| ||||  |||||| |||||||||||||| ||| ||||| | |||  |||||||  ||||||| ||||||| |||    
T  28199172 tagggataaaaatgtaattgggttattaatgtgttccatcccattggatacaccccaatttgggaggaatggaaaattgaatgaatgagtggtattggat 28199271  T
Q  170 ggaatgagttccatcaca 187  Q
    ||||| ||||||||||||    
T  28199272 ggaataagttccatcaca 28199289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 189
Target Start/End: Original strand, 17999914 - 18000024
Alignment:
Q  78 aaattgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatgag 177  Q
    ||||||| ||||| |||| |||| |||||||||||| ||||||||| |||||||| ||  || |||| |||| | ||||| ||||||| ||| |||||      
T  17999914 aaattgtcattgttttattaatgtattccattccatcggatacaccccaaattggagg-gatgaaaatttggcttaatgagtggtattggatagaatgga 18000012  T
Q  178 ttccatcacact 189  Q
    ||||||||||||    
T  18000013 ttccatcacact 18000024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 7894204 - 7894233
Alignment:
Q  2 aggagggaaaaccggaaatgacctatatta 31  Q
    ||||||||||||||||||||||||||||||    
T  7894204 aggagggaaaaccggaaatgacctatatta 7894233  T

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Target: scaffold0127 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 71 - 203
Target Start/End: Original strand, 30097 - 30228
Alignment:
Q  71 agggacaaaattgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatg 170  Q
    |||| ||||||||| ||||| |||| ||||  ||||||| ||||||||||||| ||||||||||| |||  |||||||| ||||||| |||||| |||||    
T  30097 aggggcaaaattgtaattgtcttattaatgtgttccatttcattggatacaccccaaattggggggaatggaaaattggatgaatgagtggtatatgatg 30196  T
Q  171 gaatgagttccatcacacttgcattccattcca 203  Q
    ||||| ||||||||||| || ||||||||||||    
T  30197 gaatgggttccatcaca-ttccattccattcca 30228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 71 - 203
Target Start/End: Complemental strand, 41404238 - 41404107
Alignment:
Q  71 agggacaaaattgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatg 170  Q
    |||| ||||||||| ||||| |||| ||||  ||||||| ||||||||||||| ||||||||||| |||  |||||||| ||||||| |||||| |||||    
T  41404238 aggggcaaaattgtaattgtcttattaatgtgttccatttcattggatacaccccaaattggggggaatggaaaattggatgaatgagtggtatatgatg 41404139  T
Q  171 gaatgagttccatcacacttgcattccattcca 203  Q
    ||||| ||||||||||| || ||||||||||||    
T  41404138 gaatgggttccatcaca-ttccattccattcca 41404107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 203
Target Start/End: Complemental strand, 48046558 - 48046437
Alignment:
Q  81 ttgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatgagttc 180  Q
    |||| ||||||||||  ||| |||||||||||||||||||||| |||||| |||| ||| |||| |||| | ||||  ||||||| ||||||||||||||    
T  48046558 ttgtcattgtattatttatgtattccattccattggatacaccccaaattagggggaatgaaaatttggcttaatgggtggtattggatggaatgagttc 48046459  T
Q  181 catcacacttgcattccattcca 203  Q
    |||||||| | ||||||||||||    
T  48046458 catcacac-tccattccattcca 48046437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 15581704 - 15581605
Alignment:
Q  103 ttccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatgagttccatcacacttgcattccattcc 202  Q
    ||||||||||||||||||||| ||||||||||| |||  ||||||||  |||||  ||||||| ||||||||| |||||||||||| | |||||||||||    
T  15581704 ttccattccattggatacaccccaaattggggggaatggaaaattgggagaatggatggtattggatggaatgggttccatcacac-tccattccattcc 15581606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 189
Target Start/End: Complemental strand, 7741277 - 7741157
Alignment:
Q  70 tagggacaaaattgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaat-gattggtatttga 168  Q
    ||||| |||| ||||||||||||||| ||||  ||||||| |||||||| ||| |||||||||  ||||| |||| |||||| ||| ||| |||||| ||    
T  7741277 taggggcaaagttgtgattgtattatcaatgttttccatttcattggattcacttcaaattggatgaaatgaaaatttggttaaatggatgggtattgga 7741178  T
Q  169 tggaatgagttccatcacact 189  Q
     |||||| |||||||||||||    
T  7741177 aggaatgggttccatcacact 7741157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 42366020 - 42365921
Alignment:
Q  103 ttccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatgagttccatcacacttgcattccattcc 202  Q
    ||||||||||||||||||||| |||||| |  | ||| |||||||||  |||||| ||||||| ||||||||| |||||||||||| | |||||||||||    
T  42366020 ttccattccattggatacaccccaaattagatggaatgaaaaattggaagaatgaatggtattggatggaatgggttccatcacac-tccattccattcc 42365922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 201
Target Start/End: Complemental strand, 34969928 - 34969816
Alignment:
Q  87 ttgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatgagttccatcac 186  Q
    ||||||||| |||| |||| |||||||| |||||||| |||||||| |||| | |||| |||  | ||||| ||||||| ||||||||| ||||||||||    
T  34969928 ttgtattattaatgtattctattccatttgatacaccccaaattggaggaa-tgaaaatttgacttaatgagtggtattggatggaatgggttccatcac 34969830  T
Q  187 acttgcattccattc 201  Q
    |||| ||||||||||    
T  34969829 actt-cattccattc 34969816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 203
Target Start/End: Complemental strand, 42934387 - 42934258
Alignment:
Q  73 ggacaaaattgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatgga 172  Q
    ||||||||| || ||| ||||||  |||  |||||||| |||||||||||||||||||||  | |||  |||||||   |||||| ||||||| ||||||    
T  42934387 ggacaaaatggtaattatattattgatgtgttccattctattggatacacctcaaattggatggaatggaaaattgaaggaatgagtggtattggatgga 42934288  T
Q  173 atgagttccatcacacttgcattccattcca 203  Q
    ||| |||||||||||| | ||||||||||||    
T  42934287 atgggttccatcacac-tccattccattcca 42934258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 7521291 - 7521234
Alignment:
Q  70 tagggacaaaattgtgattgtattataaatgcattccattccattggatacacctcaa 127  Q
    ||||||||||||||| ||||| |||| ||||  ||||||||||||| |||||| ||||    
T  7521291 tagggacaaaattgtaattgtgttattaatgtgttccattccattgaatacacgtcaa 7521234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 81 - 203
Target Start/End: Original strand, 39439829 - 39439950
Alignment:
Q  81 ttgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatgagttc 180  Q
    |||| ||| ||||||  ||| |||||||||||||||||||||| ||||||||||| ||| |||| |||||| ||||  ||||||| ||||||||||||||    
T  39439829 ttgtcattatattatttatgtattccattccattggatacaccccaaattggggggaatgaaaatttggtttaatgggtggtattggatggaatgagttc 39439928  T
Q  181 catcacacttgcattccattcca 203  Q
    |||||||| | ||||||||||||    
T  39439929 catcacac-tccattccattcca 39439950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 203
Target Start/End: Complemental strand, 25045543 - 25045411
Alignment:
Q  70 tagggacaaaattgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgat 169  Q
    |||||| |||| ||| ||||  |||| ||||  ||||||||||||||||||||  ||| ||||| | |||  |||||||| ||||||| ||||||| |||    
T  25045543 tagggataaaaatgtaattgagttattaatgtgttccattccattggatacacaccaatttgggaggaatggaaaattggatgaatgagtggtattggat 25045444  T
Q  170 ggaatgagttccatcacacttgcattccattcca 203  Q
    |||||||||||||||||| || ||||||||||||    
T  25045443 ggaatgagttccatcaca-ttccattccattcca 25045411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 27011316 - 27011220
Alignment:
Q  106 cattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatgagttccatcacacttgcattccattcca 203  Q
    |||||||||||||||||| ||||||||  | ||| |||||||||  |||||| ||||||| ||||||||| |||||||||||| | ||||||||||||    
T  27011316 cattccattggatacaccccaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacac-tccattccattcca 27011220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 187
Target Start/End: Complemental strand, 32278529 - 32278412
Alignment:
Q  70 tagggacaaaattgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgat 169  Q
    |||||| |||| ||| ||||  |||| ||||  ||| ||||||||||||||||| ||| ||||| | |||  |||||||| ||||||| ||||||| |||    
T  32278529 tagggataaaaatgtaattgagttattaatgtgttcaattccattggatacaccccaatttgggaggaatggaaaattggatgaatgagtggtattggat 32278430  T
Q  170 ggaatgagttccatcaca 187  Q
    ||||||||||||||||||    
T  32278429 ggaatgagttccatcaca 32278412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 42029276 - 42029375
Alignment:
Q  103 ttccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatgagttccatcacacttgcattccattcc 202  Q
    ||||||||||||||||||||| ||||||||| | ||| ||||||||   |||||| ||||||| ||||||||| ||||||||| || | |||||||||||    
T  42029276 ttccattccattggatacaccccaaattgggtggaatgaaaaattgaaggaatgagtggtattggatggaatgggttccatcatac-tccattccattcc 42029374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 14567978 - 14567902
Alignment:
Q  107 attccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatgagttccat 183  Q
    ||||||||||||||||| ||||||||||| ||| ||||||||   |  ||  ||||||| |||||||||||||||||    
T  14567978 attccattggatacaccccaaattggggggaatgaaaaattgaaggtttggatggtattggatggaatgagttccat 14567902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 165
Target Start/End: Complemental strand, 44713395 - 44713301
Alignment:
Q  70 tagggacaaaattgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatt 165  Q
    ||||||||||||||| ||| ||| ||  ||   |||||||||||| |||||||| |||||| |||| ||| ||||||||||| ||||| |||||||    
T  44713395 tagggacaaaattgtaattatataattgatatgttccattccattagatacaccccaaatttgggg-aatgaaaaattggttaaatgagtggtatt 44713301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 40024828 - 40024886
Alignment:
Q  90 tattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattg 148  Q
    |||||| ||||  ||||||||||||||||||||| ||||||||| | ||| ||||||||    
T  40024828 tattattaatgtgttccattccattggatacaccccaaattgggaggaatgaaaaattg 40024886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 189
Target Start/End: Complemental strand, 23420400 - 23420280
Alignment:
Q  70 tagggacaaaattgtgattgtattataaatgcattccattccattggatacacctca-aattgggggaaataaaaaattggttgaatgattggtatttga 168  Q
    ||||||||||||||| ||||| |||| ||||  || |||| ||||| ||||||| || ||| || |||| |  |||||||||| |||   ||||||| ||    
T  23420400 tagggacaaaattgtaattgtgttattaatgtgtttcatttcattgcatacaccccacaatgggaggaattggaaaattggttaaataggtggtattgga 23420301  T
Q  169 tggaatgagttccatcacact 189  Q
    || |||||||||||| |||||    
T  23420300 tgtaatgagttccattacact 23420280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 183
Target Start/End: Complemental strand, 25909480 - 25909400
Alignment:
Q  103 ttccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatgagttccat 183  Q
    ||||||| ||||| ||||||| ||||||||||  ||| |||||||||   | ||  ||||||| |||||||||||||||||    
T  25909480 ttccatttcattgcatacaccccaaattggggagaatgaaaaattggaatagtgggtggtattggatggaatgagttccat 25909400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 203
Target Start/End: Complemental strand, 31227841 - 31227737
Alignment:
Q  97 aatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatgagttccatcacacttgcattc 196  Q
    |||| |||||||||||||||||||||  ||| ||||||||| | ||||||||||| ||||| ||||||| |||||||||| ||||||||||||| |||||    
T  31227841 aatgtattccattccattggatacactccaatttgggggaa-tgaaaaattggttaaatgagtggtattggatggaatgatttccatcacactt-cattc 31227744  T
Q  197 cattcca 203  Q
    |||||||    
T  31227743 cattcca 31227737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 201
Target Start/End: Original strand, 41809851 - 41809980
Alignment:
Q  71 agggacaaaattgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatg 170  Q
    |||| ||||||||| ||||| |||| ||||| ||||||||||||| ||||| | ||||||||||| |||  |||||||| ||||||| |||||| | |||    
T  41809851 aggggcaaaattgtaattgtcttattaatgcgttccattccattgaatacatcccaaattggggggaatggaaaattggatgaatgagtggtatatcatg 41809950  T
Q  171 gaatgagttccatcacacttgcattccattc 201  Q
    ||||| ||||||||||| || ||||||||||    
T  41809951 gaatgggttccatcaca-ttccattccattc 41809980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 81 - 203
Target Start/End: Complemental strand, 35292205 - 35292084
Alignment:
Q  81 ttgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatgagttc 180  Q
    |||| ||||||||||  ||| |||||||||||||||||||||| |||||||| |||||| |||| |||| | ||||  ||||||| ||| |||||||||     
T  35292205 ttgtcattgtattatttatgtattccattccattggatacaccccaaattggaggaaatgaaaatttggcttaatgggtggtattggattgaatgagtta 35292106  T
Q  181 catcacacttgcattccattcca 203  Q
    |||||||| | ||||||||||||    
T  35292105 catcacac-tccattccattcca 35292084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 22405174 - 22405075
Alignment:
Q  103 ttccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatgagttccatcacacttgcattccattcc 202  Q
    ||||||||||||||||||||  ||||||||| | |||  |||||||   |||||||||||||| |||||||||||||||||||||| | |||||||||||    
T  22405174 ttccattccattggatacactccaaattgggtggaatggaaaattgaaggaatgattggtattggatggaatgagttccatcacac-tccattccattcc 22405076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 203
Target Start/End: Original strand, 35033775 - 35033907
Alignment:
Q  70 tagggacaaaattgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgat 169  Q
    |||||| |||| ||| ||||  |||| ||||  ||||||||||||||||||| |  || ||||| | |||  |||||||| ||||||| ||||||| |||    
T  35033775 tagggataaaaatgtaattgggttattaatgtgttccattccattggatacatcctaatttgggaggaatggaaaattggatgaatgagtggtattggat 35033874  T
Q  170 ggaatgagttccatcacacttgcattccattcca 203  Q
    |||||||||||||||||| || ||||||||||||    
T  35033875 ggaatgagttccatcaca-ttccattccattcca 35033907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 189
Target Start/End: Complemental strand, 50859327 - 50859219
Alignment:
Q  81 ttgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatgagttc 180  Q
    |||| |||||||||| ||||  ||||||||||||||||||||| ||||||||| | ||| | || |||| | ||||  ||||||| |||||||||| |||    
T  50859327 ttgtaattgtattattaatgtgttccattccattggatacaccccaaattgggaggaatgacaatttggctaaatgggtggtattggatggaatgaattc 50859228  T
Q  181 catcacact 189  Q
    |||||||||    
T  50859227 catcacact 50859219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 46944181 - 46944085
Alignment:
Q  106 cattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatgagttccatcacacttgcattccattcca 203  Q
    |||||||||||||||||| ||||||||| | |||  |||||||    ||||| ||||||| |||||||||||||||||||||| | ||||||||||||    
T  46944181 cattccattggatacaccccaaattgggtggaatggaaaattgacaaaatgagtggtattggatggaatgagttccatcacac-tccattccattcca 46944085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 183
Target Start/End: Complemental strand, 48084821 - 48084740
Alignment:
Q  102 attccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatgagttccat 183  Q
    |||||||||||| | ||||  | ||||||||||| ||| ||||||||||| ||||| ||||||| |||| ||||||||||||    
T  48084821 attccattccatcgtatacctcccaaattggggggaatgaaaaattggttaaatgagtggtattggatgaaatgagttccat 48084740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 41223652 - 41223752
Alignment:
Q  103 ttccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtattt-gatggaatgagttccatcacacttgcattccattc 201  Q
    ||||||||||||||||||  | ||| ||||||| ||| ||||| ||  | ||||| |||||||| ||||||||| |||||||||||| | ||||||||||    
T  41223652 ttccattccattggatacctcccaatttggggggaatgaaaaaatgactaaatgagtggtatttggatggaatgggttccatcacac-tccattccattc 41223750  T
Q  202 ca 203  Q
    ||    
T  41223751 ca 41223752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 189
Target Start/End: Original strand, 21263577 - 21263660
Alignment:
Q  106 cattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatgagttccatcacact 189  Q
    ||||||||| |||||||| ||||||||  | |||  |||||||   |||||| ||||||| ||||||||| |||||||||||||    
T  21263577 cattccattcgatacaccccaaattggatggaatggaaaattgaaggaatgagtggtattggatggaatgggttccatcacact 21263660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 3121328 - 3121267
Alignment:
Q  141 aaaaattggttgaatgattggtatttgatggaatgagttccatcacacttgcattccattcca 203  Q
    |||| |||||| ||||  ||||||| |||||||||||||||||||||| | ||||||||||||    
T  3121328 aaaatttggtttaatggatggtattggatggaatgagttccatcacac-tccattccattcca 3121267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 70 - 203
Target Start/End: Complemental strand, 30085071 - 30084939
Alignment:
Q  70 tagggacaaaattgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgat 169  Q
    |||||| |||| ||| ||||  |||| ||||  ||||||||||||||||||||| ||| ||||| | |||  |||||||| ||||||| ||||||| |||    
T  30085071 tagggataaaaatgtaattgagttattaatgtgttccattccattggatacaccccaatttgggaggaatggaaaattggatgaatgagtggtattggat 30084972  T
Q  170 ggaatgagttccatcacacttgcattccattcca 203  Q
    |||||||||||||||||| || ||||||||||||    
T  30084971 ggaatgagttccatcaca-ttccattccattcca 30084939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 203
Target Start/End: Complemental strand, 11617394 - 11617273
Alignment:
Q  81 ttgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatgagttc 180  Q
    |||| ||||||||||  ||| |||||||||||||||||||||   || ||||||| ||| |||| |||| | ||||  ||||||| ||||||||||||||    
T  11617394 ttgtcattgtattatttatgtattccattccattggatacacactaatttggggggaatgaaaatttggcttaatgggtggtattggatggaatgagttc 11617295  T
Q  181 catcacacttgcattccattcca 203  Q
    |||||||| | ||||||||||||    
T  11617294 catcacac-tccattccattcca 11617273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 187
Target Start/End: Original strand, 5247867 - 5247968
Alignment:
Q  86 attgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatgagttccatca 185  Q
    |||||||||| ||||  |||||||| ||||| ||||||| |||||||  | |||  |||||||||||||||| ||||||| ||| ||||| |||||||||    
T  5247867 attgtattattaatgtgttccattctattgggtacaccttaaattggatggaatggaaaattggttgaatgagtggtattggattgaatgggttccatca 5247966  T
Q  186 ca 187  Q
    ||    
T  5247967 ca 5247968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 4943665 - 4943566
Alignment:
Q  103 ttccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatgagttccatcacacttgcattccattcc 202  Q
    ||||||||||||||| ||||| ||||||||| | |||  |||||||   |||||| ||||||| ||||||||| |||||||||||| | |||||||||||    
T  4943665 ttccattccattggaaacaccccaaattgggtggaatggaaaattgaaggaatgagtggtattggatggaatgggttccatcacac-tccattccattcc 4943567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 31933459 - 31933565
Alignment:
Q  76 caaaattgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatg 175  Q
    |||| |||| |||||||||| ||||  || |||||||||| |||||||||  ||| |||||| | |||||||| ||| |||| ||||||| |||||||||    
T  31933459 caaatttgtaattgtattattaatgtgtttcattccattgaatacacctctgattaggggaa-tgaaaaattgattggatgaatggtattggatggaatg 31933557  T
Q  176 agttccat 183  Q
    ||||||||    
T  31933558 agttccat 31933565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 187
Target Start/End: Complemental strand, 9159601 - 9159488
Alignment:
Q  76 caaaattgtgattgtattataaatgcattccattccattggat--acacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaa 173  Q
    ||||||||| | |||||||| ||||  |||||||| |||||||  |||||||||||| |||| |||  || ||||| | ||||  ||||||| |||||||    
T  9159601 caaaattgtaactgtattatcaatgtgttccattctattggatgcacacctcaaattagggggaatggaagattggataaatgggtggtattggatggaa 9159502  T
Q  174 tgagttccatcaca 187  Q
    || |||||||||||    
T  9159501 tgggttccatcaca 9159488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 189
Target Start/End: Complemental strand, 29293312 - 29293215
Alignment:
Q  91 attataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatgagttccatcacact 189  Q
    ||||| |||| ||||||||||| ||||||| || ||||||||||| ||| |||| ||| || ||||| ||| ||| |||||| || |||||||| ||||    
T  29293312 attattaatgtattccattccactggatacccc-caaattggggggaatgaaaatttgatttaatgaatggcattggatggagtgggttccatcccact 29293215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 40339543 - 40339571
Alignment:
Q  5 agggaaaaccggaaatgacctatattata 33  Q
    |||||||||||||||||||||||||||||    
T  40339543 agggaaaaccggaaatgacctatattata 40339571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 203
Target Start/End: Original strand, 44077 - 44209
Alignment:
Q  70 tagggacaaaattgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgat 169  Q
    |||||||||  |||| ||||| |||| ||||  || |||||||||||  ||||||||||||||||| |||  |||||||||| ||||  ||||||| |||    
T  44077 tagggacaatgttgtaattgtcttattaatgtgtttcattccattgggaacacctcaaattggggggaatggaaaattggttaaatgggtggtattggat 44176  T
Q  170 ggaatgagttccatcacacttgcattccattcca 203  Q
    |||||| |||||||||||| | ||||||||||||    
T  44177 ggaatgggttccatcacac-tccattccattcca 44209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 203
Target Start/End: Original strand, 77798 - 77930
Alignment:
Q  70 tagggacaaaattgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgat 169  Q
    |||||||||  |||| ||||| |||| ||||  || |||||||||||  ||||||||||||||||| |||  |||||||||| ||||  ||||||| |||    
T  77798 tagggacaatgttgtaattgtcttattaatgtgtttcattccattgggaacacctcaaattggggggaatggaaaattggttaaatgggtggtattggat 77897  T
Q  170 ggaatgagttccatcacacttgcattccattcca 203  Q
    |||||| |||||||||||| | ||||||||||||    
T  77898 ggaatgggttccatcacac-tccattccattcca 77930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 190
Target Start/End: Original strand, 36657560 - 36657680
Alignment:
Q  70 tagggacaaaattgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgat 169  Q
    ||||| |||||||||||||||||||  |||   ||| ||||||||||||||||| ||||||||| | | | ||||  ||||| ||||| ||||||| |||    
T  36657560 taggggcaaaattgtgattgtattaacaatattttcgattccattggatacaccccaaattgggtggattgaaaatctggttaaatgaatggtattggat 36657659  T
Q  170 ggaatgagttccatcacactt 190  Q
    |||||| ||||||||||||||    
T  36657660 ggaatgggttccatcacactt 36657680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 187
Target Start/End: Original strand, 261707 - 261824
Alignment:
Q  70 tagggacaaaattgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgat 169  Q
    ||||||||||||||| ||||| |||| ||||  ||||||| ||||||||||||| ||||||| ||| |||  |||||||  | ||||| | |||||||||    
T  261707 tagggacaaaattgtaattgtgttattaatgtgttccatttcattggatacaccccaaattgaggggaatggaaaattgagtaaatgagttgtatttgat 261806  T
Q  170 ggaatgagttccatcaca 187  Q
    ||||||  ||||||||||    
T  261807 ggaatggattccatcaca 261824  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 189
Target Start/End: Complemental strand, 12633598 - 12633476
Alignment:
Q  70 tagggacaaaattgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtat---tt 166  Q
    ||||| ||||||||| |||||||||| |||| ||| ||||||||||||||||||  || ||||| | |||  |||||||| | ||||| ||||||   |     
T  12633598 tagggtcaaaattgtaattgtattattaatgtatttcattccattggatacaccctaatttgggaggaatggaaaattggctaaatgagtggtattggtc 12633499  T
Q  167 gatggaatgagttccatcacact 189  Q
    |||||||||||||||||||||||    
T  12633498 gatggaatgagttccatcacact 12633476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 19625555 - 19625456
Alignment:
Q  103 ttccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatgagttccatcacacttgcattccattcc 202  Q
    |||||| |||||||||||||| ||| ||||| | |||  |||||||| ||||||| ||||||| |||||||| |||||||||||| || |||||||||||    
T  19625555 ttccatcccattggatacaccacaatttgggaggaatggaaaattggatgaatgagtggtattggatggaattagttccatcaca-ttccattccattcc 19625457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 185
Target Start/End: Original strand, 23417207 - 23417289
Alignment:
Q  103 ttccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatgagttccatca 185  Q
    ||||||||||||||||||||| ||||||||  | ||| |||||||||  |||||| ||||||| ||||||||| |||||||||    
T  23417207 ttccattccattggatacaccccaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatca 23417289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 35759902 - 35759791
Alignment:
Q  72 gggacaaaattgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatgg 171  Q
    |||| |||||||| |||| ||||| ||||  ||||||||||||| ||||||| ||  ||||| |  || ||||||||  ||||||| ||||||| |||||    
T  35759902 gggataaaattgtaattgaattattaatgtgttccattccattgcatacaccccagtttgggagggattaaaaattgaatgaatgagtggtattggatgg 35759803  T
Q  172 aatgagttccat 183  Q
    |||||| |||||    
T  35759802 aatgaggtccat 35759791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 203
Target Start/End: Original strand, 12384 - 12513
Alignment:
Q  73 ggacaaaattgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatgga 172  Q
    ||||||||| || ||| ||||||  |||  |||||||| |||||||||||||||||||||  | |||  |||||||   |||||| ||||||| ||||||    
T  12384 ggacaaaatggtaattatattattgatgtgttccattctattggatacacctcaaattggatggaatggaaaattgaaggaatgagtggtattggatgga 12483  T
Q  173 atgagttccatcacacttgcattccattcca 203  Q
    ||| |||||||||||| | ||||||||||||    
T  12484 atgggttccatcacac-tccattccattcca 12513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 202
Target Start/End: Original strand, 38531 - 38662
Alignment:
Q  70 tagggacaaaattgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgat 169  Q
    |||||| |||||||| ||   ||||| ||||  ||||||||||||||||||| | |||||||   | ||| |||||||||  |||||| ||||||| |||    
T  38531 tagggataaaattgtaataaaattattaatgtgttccattccattggatacatcccaaattgaatggaatgaaaaattggaagaatgagtggtattggat 38630  T
Q  170 ggaatgagttccatcacacttgcattccattcc 202  Q
    |||||| |||||||||||| | |||||||||||    
T  38631 ggaatgggttccatcacac-tccattccattcc 38662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 189
Target Start/End: Complemental strand, 38679900 - 38679793
Alignment:
Q  81 ttgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatgagttc 180  Q
    |||| |||||| ||| |||| ||||||||| |||||||||||| |||||| |||| ||| |||| |||| | ||||| | |||||  |||||||||||||    
T  38679900 ttgtcattgtactattaatgtattccattcaattggatacaccccaaatttgggg-aatgaaaatttggcttaatgagtagtattgaatggaatgagttc 38679802  T
Q  181 catcacact 189  Q
    |||||||||    
T  38679801 catcacact 38679793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 28873675 - 28873745
Alignment:
Q  77 aaaattgtgattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaatt 147  Q
    |||||||| |||| ||||| ||||  ||||||||||||  |||||||| ||||||| || |||||||||||    
T  28873675 aaaattgtaattggattattaatgtgttccattccattaaatacaccttaaattggagggaataaaaaatt 28873745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 34924732 - 34924832
Alignment:
Q  103 ttccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttg-atggaatgagttccatcacacttgcattccattc 201  Q
    |||||||||||| |||||  | ||| ||||||| ||| ||||| ||  | ||||| ||||||||| |||||||| |||||||||||| | ||||||||||    
T  34924732 ttccattccattagatacctcccaatttggggggaatgaaaaaatgactaaatgagtggtatttggatggaatgggttccatcacac-tccattccattc 34924830  T
Q  202 ca 203  Q
    ||    
T  34924831 ca 34924832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 30800270 - 30800234
Alignment:
Q  153 aatgattggtatttgatggaatgagttccatcacact 189  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  30800270 aatgaatggtattggatggaatgagttccatcacact 30800234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 189
Target Start/End: Complemental strand, 57054 - 56968
Alignment:
Q  103 ttccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtatttgatggaatgagttccatcacact 189  Q
    ||||||||||||||||||  | ||| ||||||| ||| ||||| ||  | ||||| ||||||| ||||||||  |||||||||||||    
T  57054 ttccattccattggatacctcccaatttggggggaatgaaaaaatgactaaatgagtggtattggatggaattggttccatcacact 56968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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