View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15514_low_31 (Length: 250)
Name: NF15514_low_31
Description: NF15514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15514_low_31 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 88 - 250
Target Start/End: Complemental strand, 39315453 - 39315291
Alignment:
| Q |
88 |
gaataggttggtgtatcaaaagtactctgatgcaatgaatgatttaactgaggtgattatggagctattggccattagtttgggtgtggatcgcaaacat |
187 |
Q |
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| T |
39315453 |
gaataggttggtgtatcaaaagtactctgatgcaatgaatgatttaactgaggtgattatggagctattggccattagtttgggtgtggatcgcaaacat |
39315354 |
T |
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| Q |
188 |
tatcaaagattttttgaagatgctgagtcaatgatgagatgcaacttttatccaccttgcagt |
250 |
Q |
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| T |
39315353 |
tatcaaagattttttgaagatgctgagtcaatgatgagatgcaacttttatccaccttgcagt |
39315291 |
T |
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Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 97 - 246
Target Start/End: Complemental strand, 44114186 - 44114037
Alignment:
| Q |
97 |
ggtgtatcaaaagtactctgatgcaatgaatgatttaactgaggtgattatggagctattggccattagtttgggtgtggatcgcaaacattatcaaaga |
196 |
Q |
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| T |
44114186 |
ggtgtatcaaaagtactgtgaagcaatgaaagaattatctttagtgattatggagctcttggccattagtttggggatagatcgtttgcattatcgaaga |
44114087 |
T |
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| Q |
197 |
ttttttgaagatgctgagtcaatgatgagatgcaacttttatccaccttg |
246 |
Q |
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| T |
44114086 |
ttttttgaagatggtgactcaataatgagatgtaactattatccaccttg |
44114037 |
T |
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