View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15514_low_36 (Length: 238)

Name: NF15514_low_36
Description: NF15514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15514_low_36
NF15514_low_36
[»] chr4 (23 HSPs)
chr4 (1-222)||(42532931-42533153)
chr4 (7-222)||(22047581-22047799)
chr4 (3-222)||(323337-323556)
chr4 (44-222)||(4839180-4839359)
chr4 (55-222)||(40995593-40995762)
chr4 (75-222)||(26069694-26069843)
chr4 (65-222)||(19247871-19248030)
chr4 (75-218)||(1187934-1188079)
chr4 (9-222)||(46692080-46692296)
chr4 (7-222)||(44432097-44432310)
chr4 (7-171)||(5273647-5273813)
chr4 (77-222)||(30218435-30218581)
chr4 (96-222)||(26373673-26373800)
chr4 (75-192)||(35416757-35416875)
chr4 (62-222)||(21677711-21677874)
chr4 (75-222)||(55326744-55326894)
chr4 (103-222)||(33110747-33110867)
chr4 (96-217)||(20948736-20948858)
chr4 (75-188)||(52618484-52618598)
chr4 (65-191)||(8894893-8895018)
chr4 (123-222)||(53895397-53895497)
chr4 (79-191)||(6639951-6640064)
chr4 (75-196)||(9417507-9417625)
[»] chr1 (21 HSPs)
chr1 (3-222)||(9667739-9667960)
chr1 (3-222)||(39001225-39001446)
chr1 (3-222)||(49248969-49249190)
chr1 (7-222)||(33492242-33492456)
chr1 (44-222)||(38121976-38122155)
chr1 (7-222)||(12168260-12168477)
chr1 (66-219)||(16832829-16832983)
chr1 (44-222)||(44505314-44505494)
chr1 (75-222)||(11738841-11738990)
chr1 (48-222)||(432384-432559)
chr1 (48-222)||(41000147-41000323)
chr1 (66-222)||(13218089-13218246)
chr1 (66-222)||(16129620-16129777)
chr1 (105-222)||(8996306-8996423)
chr1 (124-222)||(16130232-16130331)
chr1 (103-222)||(15161101-15161220)
chr1 (89-222)||(13830272-13830405)
chr1 (90-188)||(7612368-7612466)
chr1 (79-140)||(6244175-6244236)
chr1 (103-166)||(36080218-36080280)
chr1 (94-222)||(39454092-39454221)
[»] chr3 (28 HSPs)
chr3 (3-222)||(20836991-20837212)
chr3 (7-222)||(7653266-7653482)
chr3 (7-222)||(3588300-3588518)
chr3 (7-222)||(8615404-8615621)
chr3 (47-222)||(9989338-9989514)
chr3 (44-222)||(27030727-27030906)
chr3 (7-222)||(10386114-10386332)
chr3 (75-222)||(36469479-36469626)
chr3 (9-222)||(52308129-52308349)
chr3 (44-222)||(23385335-23385514)
chr3 (75-222)||(27850594-27850741)
chr3 (63-222)||(33247946-33248106)
chr3 (75-208)||(20963711-20963846)
chr3 (96-222)||(37471730-37471857)
chr3 (65-222)||(22097627-22097785)
chr3 (66-222)||(48168237-48168394)
chr3 (103-222)||(45527645-45527765)
chr3 (103-208)||(23193921-23194027)
chr3 (132-222)||(4743044-4743135)
chr3 (44-135)||(23411616-23411707)
chr3 (96-166)||(26335108-26335178)
chr3 (105-205)||(2357161-2357261)
chr3 (126-222)||(1232535-1232632)
chr3 (103-159)||(49434095-49434150)
chr3 (93-196)||(25804970-25805073)
chr3 (79-140)||(17405187-17405248)
chr3 (66-130)||(4755002-4755064)
chr3 (3-35)||(26335007-26335039)
[»] chr7 (27 HSPs)
chr7 (9-222)||(22818316-22818530)
chr7 (3-222)||(8107932-8108153)
chr7 (7-222)||(22321844-22322061)
chr7 (7-222)||(10346349-10346567)
chr7 (7-222)||(31158320-31158537)
chr7 (47-222)||(12190784-12190961)
chr7 (9-222)||(19472307-19472523)
chr7 (7-222)||(2631300-2631514)
chr7 (47-222)||(12183807-12183984)
chr7 (7-222)||(23794994-23795212)
chr7 (66-222)||(31664538-31664695)
chr7 (96-222)||(12090504-12090631)
chr7 (62-222)||(24482701-24482862)
chr7 (65-222)||(2477618-2477776)
chr7 (44-170)||(6172466-6172592)
chr7 (44-169)||(33160121-33160246)
chr7 (75-222)||(3544924-3545071)
chr7 (66-222)||(2797607-2797762)
chr7 (66-222)||(45500754-45500911)
chr7 (105-222)||(22909118-22909235)
chr7 (74-222)||(31878570-31878718)
chr7 (100-222)||(1953952-1954075)
chr7 (105-222)||(1274588-1274705)
chr7 (105-222)||(19063514-19063631)
chr7 (180-222)||(19472233-19472275)
chr7 (90-196)||(28958516-28958622)
chr7 (105-222)||(29032828-29032945)
[»] scaffold0147 (1 HSPs)
scaffold0147 (12-222)||(6639-6850)
[»] chr8 (25 HSPs)
chr8 (3-222)||(41577375-41577596)
chr8 (3-222)||(16579982-16580203)
chr8 (3-222)||(11309031-11309249)
chr8 (7-222)||(9068211-9068428)
chr8 (7-222)||(22180502-22180719)
chr8 (47-222)||(27347968-27348144)
chr8 (7-222)||(28369993-28370211)
chr8 (7-222)||(28926187-28926405)
chr8 (46-222)||(8743327-8743504)
chr8 (7-222)||(3298702-3298920)
chr8 (75-222)||(16958521-16958668)
chr8 (75-222)||(12538126-12538275)
chr8 (105-222)||(22243288-22243406)
chr8 (103-222)||(17992892-17993012)
chr8 (96-222)||(24040707-24040834)
chr8 (103-222)||(4861994-4862114)
chr8 (89-188)||(34006838-34006938)
chr8 (105-222)||(22233895-22234012)
chr8 (105-222)||(13509964-13510081)
chr8 (105-222)||(13599494-13599611)
chr8 (105-222)||(22222709-22222828)
chr8 (105-222)||(22229051-22229170)
chr8 (92-218)||(1607272-1607399)
chr8 (75-196)||(21692140-21692258)
chr8 (101-142)||(36737110-36737151)
[»] scaffold0336 (1 HSPs)
scaffold0336 (3-222)||(8639-8860)
[»] chr5 (17 HSPs)
chr5 (3-222)||(31845877-31846098)
chr5 (16-222)||(33434512-33434721)
chr5 (7-222)||(34456198-34456415)
chr5 (7-222)||(7314865-7315083)
chr5 (44-222)||(9404363-9404542)
chr5 (7-222)||(30607120-30607338)
chr5 (46-222)||(11723320-11723497)
chr5 (47-222)||(11766697-11766873)
chr5 (66-222)||(34869790-34869947)
chr5 (48-222)||(16904653-16904828)
chr5 (7-222)||(14344372-14344587)
chr5 (76-222)||(27167141-27167288)
chr5 (7-222)||(24835636-24835853)
chr5 (75-222)||(6269860-6270008)
chr5 (105-219)||(37251952-37252065)
chr5 (105-171)||(32226833-32226898)
chr5 (103-204)||(39656100-39656201)
[»] scaffold0076 (1 HSPs)
scaffold0076 (3-219)||(25697-25916)
[»] chr6 (25 HSPs)
chr6 (7-222)||(26515472-26515689)
chr6 (8-222)||(21596571-21596791)
chr6 (7-222)||(34006405-34006620)
chr6 (46-222)||(3538988-3539165)
chr6 (10-222)||(9932849-9933063)
chr6 (7-222)||(24161299-24161517)
chr6 (75-222)||(14479529-14479678)
chr6 (66-222)||(32806806-32806965)
chr6 (7-171)||(26510408-26510573)
chr6 (65-222)||(5989047-5989205)
chr6 (75-222)||(24878835-24878983)
chr6 (103-222)||(14270670-14270789)
chr6 (79-222)||(26604313-26604457)
chr6 (103-222)||(21631178-21631300)
chr6 (105-222)||(25976950-25977066)
chr6 (105-214)||(34913449-34913558)
chr6 (105-222)||(1454796-1454913)
chr6 (105-222)||(1466488-1466605)
chr6 (89-222)||(15642402-15642534)
chr6 (118-221)||(32821815-32821918)
chr6 (109-222)||(13173860-13173973)
chr6 (109-222)||(13182393-13182506)
chr6 (75-140)||(6868179-6868244)
chr6 (144-196)||(14354983-14355035)
chr6 (146-222)||(9518488-9518565)
[»] scaffold1494 (1 HSPs)
scaffold1494 (7-222)||(1465-1682)
[»] scaffold0159 (1 HSPs)
scaffold0159 (44-222)||(28943-29123)
[»] chr2 (21 HSPs)
chr2 (9-222)||(29223612-29223833)
chr2 (9-222)||(29336911-29337132)
chr2 (75-222)||(42702250-42702399)
chr2 (44-222)||(5784568-5784748)
chr2 (65-222)||(28457921-28458079)
chr2 (66-222)||(36040306-36040463)
chr2 (66-222)||(36667913-36668071)
chr2 (91-222)||(23925075-23925207)
chr2 (9-222)||(13230385-13230598)
chr2 (75-222)||(32522899-32523047)
chr2 (96-222)||(36557566-36557693)
chr2 (66-222)||(43991492-43991643)
chr2 (75-171)||(8687769-8687864)
chr2 (55-222)||(14700590-14700759)
chr2 (96-222)||(27257376-27257503)
chr2 (89-222)||(24663175-24663309)
chr2 (90-196)||(31758259-31758365)
chr2 (93-222)||(9787150-9787282)
chr2 (126-222)||(21159986-21160083)
chr2 (103-166)||(492737-492799)
chr2 (65-159)||(11651776-11651870)
[»] scaffold0019 (1 HSPs)
scaffold0019 (81-222)||(116611-116754)
[»] scaffold0014 (1 HSPs)
scaffold0014 (98-222)||(76495-76620)
[»] scaffold1832 (1 HSPs)
scaffold1832 (90-222)||(14-147)
[»] scaffold0059 (1 HSPs)
scaffold0059 (89-222)||(16517-16651)
[»] scaffold0298 (2 HSPs)
scaffold0298 (105-222)||(12246-12363)
scaffold0298 (105-222)||(16016-16133)
[»] scaffold0124 (1 HSPs)
scaffold0124 (105-222)||(12195-12312)
[»] scaffold0505 (1 HSPs)
scaffold0505 (103-222)||(1028-1147)
[»] scaffold0091 (1 HSPs)
scaffold0091 (90-222)||(14174-14302)
[»] scaffold0160 (1 HSPs)
scaffold0160 (106-160)||(35390-35443)
[»] scaffold0458 (1 HSPs)
scaffold0458 (94-222)||(9497-9626)


Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 42533153 - 42532931
Alignment:
Q  1 cgaacacagcccatataaatagtttttccttctctctctagatttctattacatttttattcatattttctgcattttagagagaggttagggcatttct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42533153 cgaacacagcccatataaatagtttttccttctctctctagatttctattacatttttattcatattttctgcattttagagagaggttagggcatttct 42533054  T
Q  101 agagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatc 199  Q
    |||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||  |||| ||||||||||||||||||||||    
T  42533053 agagagagaaacacaaagcaaggtggttaggagtagattcaagcctagatttgttgagacgtcatggatcttgtcatggaatcttcatcttttcttcatc 42532954  T
Q  200 ctttgcaaagttatcatagacat 222  Q
     ||||||||| ||||||||||||    
T  42532953 atttgcaaagctatcatagacat 42532931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 22047581 - 22047799
Alignment:
Q  7 cagcccatataaatagtttttccttctctctctagatt--tctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctaga 103  Q
    ||||||||||||||||||||  ||||||| |||| |||  ||||||||||||||||||||||||| |||  ||||||||||||  |||||| ||||||||    
T  22047581 cagcccatataaatagttttctcttctctttctaaattattctattacatttttattcatatttttctgg-ttttagagagagactagggcttttctaga 22047679  T
Q  104 gagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctt 202  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| | ||||||||  |||| ||||||||| | |||||||||||||    
T  22047680 gagagaaacacaaagcaaggtagttaggagaagattcaagccaagatttgttgagacattatggatcttgtcatggaatcttcaccctttcttcatcctt 22047779  T
Q  203 tgcaaagttatcatagacat 222  Q
    ||||||| ||||||||||||    
T  22047780 tgcaaagctatcatagacat 22047799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 323337 - 323556
Alignment:
Q  3 aacacagcccatataaatagtttttccttctctct--ctagatttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttc 99  Q
    |||||| ||||||||||||||||||||||||||||  |||   ||| |||||||||||||||||||||| |||  ||||||||||||  |||||| ||||    
T  323337 aacacaacccatataaatagtttttccttctctcttgcta---ttcaattacatttttattcatatttttctgg-ttttagagagagactagggcttttc 323432  T
Q  100 tagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcat 198  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||| | |||||||||    
T  323433 tagagagagaaacacaaagcaagatagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcat 323532  T
Q  199 cctttgcaaagttatcatagacat 222  Q
    ||||||||||| ||||||| ||||    
T  323533 cctttgcaaagctatcataaacat 323556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 44 - 222
Target Start/End: Complemental strand, 4839359 - 4839180
Alignment:
Q  44 ttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaa 142  Q
    |||||||||||||||||||||||||| |||  ||||||||||||  |||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  4839359 ttctattacatttttattcatatttttctgg-ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttaggagtagattcaa 4839261  T
Q  143 gccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    |||||||||||||||||| ||||||||||  |||| ||||||||| | |||||||||||||||||||| ||||||||||||    
T  4839260 gccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcctttgcaaagctatcatagacat 4839180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 55 - 222
Target Start/End: Complemental strand, 40995762 - 40995593
Alignment:
Q  55 ttttattcatatttt-ctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttg 153  Q
    ||||||||||||||| |||  ||||||||||||  |||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  40995762 ttttattcatatttttctggtttttagagagagactagggcttttctagagagagaaacacaaatcaaggtagttaggagtagattcaagccaagatttg 40995663  T
Q  154 ttgagacgtcatggatctcatca-tgaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||||||| |||||||||| |||| ||||||||||||| ||||||||||||||||||| ||||||||||||    
T  40995662 ttgagacatcatggatcttatcattgaatcttcatctcttcttcatcctttgcaaagctatcatagacat 40995593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 75 - 222
Target Start/End: Original strand, 26069694 - 26069843
Alignment:
Q  75 ttttagagagaggttagggcattt-ctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctca 173  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||      
T  26069694 ttttagagagaggttagggcattttctagagagagaaacacaaagcaaggtagttagaagtagattcaagccaagatttgttgagacatcatggatcttg 26069793  T
Q  174 tca-tgaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||| |||||||||| || ||||||||||||||||||| ||||||||||||    
T  26069794 tcattgaatcttcaactcttcttcatcctttgcaaagctatcatagacat 26069843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 19248030 - 19247871
Alignment:
Q  65 attttctgcattttagagagaggttagggcattt-ctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtc 163  Q
    ||||||||  |||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||| |||| |||||||||||| ||    
T  19248030 attttctggtttttagagagaggttagggcattttctagagagagaaacacaaagcaaggtagttgggagtagattcaaaccaatatttgttgagacatc 19247931  T
Q  164 atggatctcatcat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||| ||||  |||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  19247930 atgaatcttgtcatggaatcttcatcttttcttcatcctttgcaaagctatcatagacat 19247871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 75 - 218
Target Start/End: Original strand, 1187934 - 1188079
Alignment:
Q  75 ttttagagagaggttagggcattt-ctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctca 173  Q
    |||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||| ||||      
T  1187934 ttttagagagaggttagggcattttctagacagagaaacacaaagcaaggtagttaggagtagattcaagtcaagatttgttgagacatcatgaatcttg 1188033  T
Q  174 tcatg-aatcttcatcttttcttcatcctttgcaaagttatcatag 218  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||    
T  1188034 tcatgaaatcttcatcttttcttcatcctttgcaaagctatcatag 1188079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 46692296 - 46692080
Alignment:
Q  9 gcccatataaatagtttttccttctctctctagat-ttctattacatttttattcata-ttttctgcattttagagagaggttagggcatttctagagag 106  Q
    ||||||||||||||||||  ||||||| || |  | |||| |||||||||  || ||| |||||||  ||||||||||||  |||||| ||||||||||     
T  46692296 gcccatataaatagttttctcttctctttccaactattcttttacattttctttgatatttttctggtttttagagagagactagggcttttctagagat 46692197  T
Q  107 agaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatca-tgaatcttcatcttttcttcatcctttgc 205  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||  ||| ||||||||||| | ||| |||||||||||    
T  46692196 agaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatgaatcttgtcattgaatcttcatttcttcctcatcctttgc 46692097  T
Q  206 aaagttatcatagacat 222  Q
    |||| ||||||||||||    
T  46692096 aaagctatcatagacat 46692080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 44432310 - 44432097
Alignment:
Q  7 cagcccatataaatagtttttccttctctctctagatttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctagaga 105  Q
    ||||||||| ||||||||||  | ||||| |||| |||   |||||||||||||||||||||| |||  ||||||||||||  |||||  ||||||||||    
T  44432310 cagcccataaaaatagttttctcctctctttctatatt---attacatttttattcatatttttctgg-ttttagagagagactagggattttctagaga 44432215  T
Q  106 gagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttg 204  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||   ||| ||||||||| | ||||||||||||||     
T  44432214 gagaaactcaaagcaaggtagttaggagtagattcaagccaagatttcttgagacatcatggatcttgccatggaatcttcaccctttcttcatccttta 44432115  T
Q  205 caaagttatcatagacat 222  Q
    ||||| ||||||||||||    
T  44432114 caaagctatcatagacat 44432097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 7 - 171
Target Start/End: Complemental strand, 5273813 - 5273647
Alignment:
Q  7 cagcccatataaatagtttttccttctctctcta-gat-ttctattacatttttattcatattttctgcattttagagagaggttagggcatttctagag 104  Q
    ||||||||||||||||||||  ||||||| || | ||  ||||||||||||||||||||||||||     ||||||||||||  |||||| |||||||||    
T  5273813 cagcccatataaatagttttctcttctctttccaagagattctattacatttttattcatatttttctagttttagagagagactagggcttttctagag 5273714  T
Q  105 agagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatct 171  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5273713 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatct 5273647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 77 - 222
Target Start/End: Complemental strand, 30218581 - 30218435
Alignment:
Q  77 ttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatca 176  Q
    ||||||||||  |||||| ||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||  |||   ||    
T  30218581 ttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttaagagtagattcaacccaagatttgttgagacgtcatgagtctaggca 30218482  T
Q  177 t-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  30218481 tggaatcttcatcttttcttcatccttagcaaagctatcatagacat 30218435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 26373800 - 26373673
Alignment:
Q  96 tttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatca-tgaatcttcatcttttct 194  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||  |||||||||| |||| ||||||||||| | ||||    
T  26373800 tttctagagagagaaacacaaagcaaggtagttaggagtagattcaagccaatatttgttgagatatcatggatcttatcattgaatcttcatttcttct 26373701  T
Q  195 tcatcctttgcaaagttatcatagacat 222  Q
    | ||||||||||||| ||||||||||||    
T  26373700 ttatcctttgcaaagctatcatagacat 26373673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 75 - 192
Target Start/End: Complemental strand, 35416875 - 35416757
Alignment:
Q  75 ttttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcat 174  Q
    ||||||||||||  |||||| ||| ||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||| ||||||||||  |    
T  35416875 ttttagagagagactagggcttttttagagagagaaacacaaagaaagatagttaggagtagattcaagccaagatttgttgagacatcatggatcttgt 35416776  T
Q  175 catg-aatcttcatctttt 192  Q
    |||| ||||||||||||||    
T  35416775 catgaaatcttcatctttt 35416757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 62 - 222
Target Start/End: Complemental strand, 21677874 - 21677711
Alignment:
Q  62 catattttctgcattttagagagaggttagggcatttctagagagaga--aacacaatgcaaggtagttaggagtagattcaagccaagatttgttgaga 159  Q
    |||||||||||  ||||||||||||  |||||  ||||||||||||||  ||||||| |||| |||||||||| ||||||||| ||||||||  ||||||    
T  21677874 catattttctggtttttagagagagactagggattttctagagagagagaaacacaaagcaaagtagttaggaatagattcaacccaagattcattgaga 21677775  T
Q  160 cgtcatggatctcatcat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    | ||||| ||||   |||  ||||||||||||||||||||||||||||||| ||||||||||||    
T  21677774 catcatgaatctaggcataaaatcttcatcttttcttcatcctttgcaaagctatcatagacat 21677711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 75 - 222
Target Start/End: Original strand, 55326744 - 55326894
Alignment:
Q  75 ttttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtag--attcaagccaagatttgttgagacgtcatggatctc 172  Q
    ||||||||||||  |||||||||||||||||||||||||||  ||||| |||||||||||||  |||||| ||||||||  ||||||| ||||| ||||     
T  55326744 ttttagagagagactagggcatttctagagagagaaacacatagcaagatagttaggagtagatattcaacccaagattcattgagacatcatgaatcta 55326843  T
Q  173 atcatg-aatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
      |||| |||||||||||||||||||||| || ||||| ||||||||||||    
T  55326844 ggcatgaaatcttcatcttttcttcatccattccaaagctatcatagacat 55326894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 33110867 - 33110747
Alignment:
Q  103 agagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcatga-atcttcatcttttcttcatcct 201  Q
    |||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||| ||||| || |   ||||| ||||||||||||| ||||||||    
T  33110867 agagagaaacacaaggcaaggtagttaagagtagattcaacccaagatttgttgagacatcatgaatttaggcatgacatcttcatctttttttcatcct 33110768  T
Q  202 ttgcaaagttatcatagacat 222  Q
    |||||||| |||| |||||||    
T  33110767 ttgcaaagctatcgtagacat 33110747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 96 - 217
Target Start/End: Original strand, 20948736 - 20948858
Alignment:
Q  96 tttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttct 194  Q
    ||||||||||||||||||||| ||||||||||||  ||||||||||| ||||||||||| ||||| ||||| ||||   ||| |||||||||||||||||    
T  20948736 tttctagagagagaaacacaaagcaaggtagttaaaagtagattcaacccaagatttgtcgagacatcatgaatctaggcatggaatcttcatcttttct 20948835  T
Q  195 tcatcctttgcaaagttatcata 217  Q
    ||||||||||  ||| |||||||    
T  20948836 tcatcctttgtcaagctatcata 20948858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 188
Target Start/End: Original strand, 52618484 - 52618598
Alignment:
Q  75 ttttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcat 174  Q
    ||||||||||||  |||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||  ||||||| ||||| ||||  |    
T  52618484 ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttaggagtagattcaacccaagattcattgagacatcatgaatcttgt 52618583  T
Q  175 cat-gaatcttcatc 188  Q
    ||| |||||||||||    
T  52618584 catggaatcttcatc 52618598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 65 - 191
Target Start/End: Original strand, 8894893 - 8895018
Alignment:
Q  65 attttctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtca 164  Q
    ||||||||  |||||||||||| |||||||||||||  |||||||||||||||||||||  ||||| |||||||||   ||||||||||| ||||  |||    
T  8894893 attttctgatttttagagagagattagggcatttct--agagagaaacacaatgcaagggtgttagaagtagattcttcccaagatttgtagagaaatca 8894990  T
Q  165 tggatctcatcatg-aatcttcatcttt 191  Q
    || ||||  ||||| |||||||||||||    
T  8894991 tgaatcttgtcatgaaatcttcatcttt 8895018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 53895397 - 53895497
Alignment:
Q  123 gtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcatgaa-tcttcatcttttcttcatcctttgcaaagttatcatagaca 221  Q
    |||||||  ||||||||||| ||||||||||||||||| ||||| ||||   |||| | ||||||||| ||||||||||||||||||| |||||||||||    
T  53895397 gtagttaaaagtagattcaacccaagatttgttgagacatcatgaatctaggcatggagtcttcatctcttcttcatcctttgcaaagctatcatagaca 53895496  T
Q  222 t 222  Q
    |    
T  53895497 t 53895497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 191
Target Start/End: Original strand, 6639951 - 6640064
Alignment:
Q  79 agagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcatg 178  Q
    ||||||||  |||| ||||||||| ||||||||||||| ||||||  |||||||||||||||   |||| |||||||||||| || || |||| | ||||    
T  6639951 agagagagagtaggccatttctagtgagagaaacacaaagcaagggtgttaggagtagattcttcccaaaatttgttgagacatcttgaatcttagcatg 6640050  T
Q  179 -aatcttcatcttt 191  Q
     |||||||||||||    
T  6640051 taatcttcatcttt 6640064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 196
Target Start/End: Complemental strand, 9417625 - 9417507
Alignment:
Q  75 ttttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcat 174  Q
    ||||||||||||   ||||| ||||||||||||||||||  | |||||   ||||| ||| ||||    ||||||||||||||||| ||||| ||||  |    
T  9417625 ttttagagagag---agggcgtttctagagagagaaacatgaagcaagagtgttagaagtggattatttccaagatttgttgagacatcatgaatctttt 9417529  T
Q  175 catgaatcttcatcttttcttc 196  Q
    ||||||||||||||||| ||||    
T  9417528 catgaatcttcatctttccttc 9417507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 9667960 - 9667739
Alignment:
Q  3 aacacagcccatataaatagtttttccttctctctctagattt-ctattacatttttattcatattttctgcattttagagagaggttagggcatttcta 101  Q
    ||||||||||||||||||||||||||||||||||||| | | | | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9667960 aacacagcccatataaatagtttttccttctctctcttgctatacaattacatttttattcatattttctgcattctagagagaggttagggcatttcta 9667861  T
Q  102 gagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcc 200  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| |||||||||||||||||||||||    
T  9667860 gagagagaaatacaaggcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcatcc 9667761  T
Q  201 tttgcaaagttatcatagacat 222  Q
    ||||||||| ||||||||||||    
T  9667760 tttgcaaagctatcatagacat 9667739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 39001446 - 39001225
Alignment:
Q  3 aacacagcccatataaatagtttttccttctctctctagat-ttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttct 100  Q
    ||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||| |||  ||||||||||||  |||||| |||||    
T  39001446 aacacagcccatataaatagtttttccttctctctcttgctattctattacatttttattcatatttttctgg-ttttagagagagactagggcttttct 39001348  T
Q  101 agagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatc 199  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||| | ||||||||||    
T  39001347 agagagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatc 39001248  T
Q  200 ctttgcaaagttatcatagacat 222  Q
    |||||||||| ||||||||||||    
T  39001247 ctttgcaaagctatcatagacat 39001225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 49248969 - 49249190
Alignment:
Q  3 aacacagcccatataaatagtttttccttctctctctagat-ttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttct 100  Q
    |||||| |||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||| |||  ||||||||||||  | |||| |||||    
T  49248969 aacacaacccatataaatagtttttccttctctctcttgctattctattacatttttattcatatttttctgg-ttttagagagagactggggcttttct 49249067  T
Q  101 agagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatc 199  Q
    | |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||| | ||||||||||    
T  49249068 aaagagagaaacacaaagtaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatc 49249167  T
Q  200 ctttgcaaagttatcatagacat 222  Q
    |||||||||| ||||||||||||    
T  49249168 ctttgcaaagctatcatagacat 49249190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 33492456 - 33492242
Alignment:
Q  7 cagcccatataaatagtttttccttctctctctagatttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctagaga 105  Q
    ||||||||||||||||||||  ||||||| || |   | |||||||||||||||||||||||| |||  ||||||||||||  |||||| ||||||||||    
T  33492456 cagcccatataaatagttttctcttctctttccaa--tgctattacatttttattcatatttttctgg-ttttagagagagactagggcttttctagaga 33492360  T
Q  106 gagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttg 204  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||| | |||||||||||||||    
T  33492359 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcctttg 33492260  T
Q  205 caaagttatcatagacat 222  Q
    ||||| ||||||||||||    
T  33492259 caaagctatcatagacat 33492242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 44 - 222
Target Start/End: Complemental strand, 38122155 - 38121976
Alignment:
Q  44 ttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaa 142  Q
    |||||||||||||||||||||||||| |||  ||||||||||||  |||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  38122155 ttctattacatttttattcatatttttctgg-ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttaggagtagattcaa 38122057  T
Q  143 gccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    |||||||||||||||||| ||||||||||  |||| ||||||||| | |||||||||||||||||||| ||||||||||||    
T  38122056 gccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcctttgcaaagctatcatagacat 38121976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 12168477 - 12168260
Alignment:
Q  7 cagcccatataaatagtttttccttctctctcta-gatttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctagag 104  Q
    |||||||||||||||||| |  ||||||| || | || | |||||||||||||||||||||||| |||  ||||||||||||  |||||| |||||||||    
T  12168477 cagcccatataaatagttatctcttctctttccaagaatgctattacatttttattcatatttttctgg-ttttagagagagactagggcttttctagag 12168379  T
Q  105 agagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatccttt 203  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||  |||| ||||||||| | ||||||||||||||    
T  12168378 agagaaacacaaagcaaggtagttaggtgtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccatttcttcatccttt 12168279  T
Q  204 gcaaagttatcatagacat 222  Q
    |||||| ||||||||||||    
T  12168278 gcaaagctatcatagacat 12168260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 66 - 219
Target Start/End: Complemental strand, 16832983 - 16832829
Alignment:
Q  66 ttttctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcat 165  Q
    ||||||| |||||||||||||  |||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||    
T  16832983 ttttctggattttagagagagcctagggcttttctagagagagaaacacaaagtaaggtagttaggagtagattcaagccaagatttgttgagacatcat 16832884  T
Q  166 ggatctcatcatg-aatcttcatcttttcttcatcctttgcaaagttatcataga 219  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| |||||||||    
T  16832883 ggatcttatcatgaaatcttcatcttttcttcatcctttgcaaagctatcataga 16832829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 44 - 222
Target Start/End: Complemental strand, 44505494 - 44505314
Alignment:
Q  44 ttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaa 142  Q
    |||||||||||||||||| | ||||| |||  ||||||||||||  |||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  44505494 ttctattacatttttatttacatttttctggtttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttaggagtagattcaa 44505395  T
Q  143 gccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||||| |||||||||||| |||||||||   |||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  44505394 gccaaaatttgttgagacatcatggatcatgtcatggaatcttcatcttttcttcatcctttgcaaagctatcatagacat 44505314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 75 - 222
Target Start/End: Complemental strand, 11738990 - 11738841
Alignment:
Q  75 ttttagagagaggttagggcattt-ctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctca 173  Q
    |||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||| || ||||||||||      
T  11738990 ttttagagagaggttagggcattttctatagagagaaacacaaagcaaggtagttaggagtaaattcaagccaagatttgttgacacatcatggatcttg 11738891  T
Q  174 tcat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  11738890 tcatggaatcttcatcttttcttcatcctttgcaaagctatcatagacat 11738841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 48 - 222
Target Start/End: Complemental strand, 432559 - 432384
Alignment:
Q  48 attacatttttattcatatttt-ctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagcca 146  Q
    |||||||||||||| ||||||| |||  |||||||||||| ||| | |||||||||||||||||| |||| |||||||||||||||||||| ||||||||    
T  432559 attacatttttatttatatttttctgg-ttttagagagagattatgacatttctagagagagaaatacaaggcaaggtagttaggagtagactcaagcca 432461  T
Q  147 agatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    |||||||||||||| ||||| ||||  |||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  432460 agatttgttgagacatcatgaatcttgtcatggaatcttcatcttttcttcatcctttgcaaagctatcatagacat 432384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 48 - 222
Target Start/End: Complemental strand, 41000323 - 41000147
Alignment:
Q  48 attacatttttattcatatttt-ctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagcca 146  Q
    |||||||||||||| | ||||| |||  ||||||||||||  |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41000323 attacatttttatttacatttttctggtttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttaggagtagattcaagcca 41000224  T
Q  147 agatttgttgagacgtcatggatctcatca-tgaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    |||||||||||||| ||||||||||  ||| ||||||||||| | ||| ||||||||||||||  ||||||||||||    
T  41000223 agatttgttgagacatcatggatcttgtcattgaatcttcatttcttcctcatcctttgcaaatctatcatagacat 41000147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 66 - 222
Target Start/End: Complemental strand, 13218246 - 13218089
Alignment:
Q  66 ttttctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcat 165  Q
    |||||||  |||| |||||||  |||| | ||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  13218246 ttttctggtttttggagagagactaggccttttttagagagagaaacacaaagcaaggtggttaggagtagattcaagccaagatttgttgagacatcat 13218147  T
Q  166 ggatctcatcat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||| ||  |||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  13218146 ggaacttgtcatggaatcttcatcttttcttcatcctttgcaaagctatcatagacat 13218089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 66 - 222
Target Start/End: Original strand, 16129620 - 16129777
Alignment:
Q  66 ttttctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcat 165  Q
    |||||||  ||||||| ||||  |||||| ||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  16129620 ttttctggtttttagaaagagactagggcttttatagagagagaaacacaaagcaagatagttaggagtagattcaagccaagatttgttgagacatcat 16129719  T
Q  166 ggatctcatca-tgaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||||||  ||| ||||||||||| | ||||||||| ||||||||| ||||||||||||    
T  16129720 ggatcttgtcattgaatcttcatttcttcttcatcatttgcaaagctatcatagacat 16129777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 105 - 222
Target Start/End: Complemental strand, 8996423 - 8996306
Alignment:
Q  105 agagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatccttt 203  Q
    |||||||||||| ||||||| ||||||||||||||||| ||||||||||||| ||| ||||||||||   ||| |||||||||||| |||||||||||||    
T  8996423 agagaaacacaaagcaaggt-gttaggagtagattcaacccaagatttgttgcgacatcatggatctaggcattgaatcttcatctcttcttcatccttt 8996325  T
Q  204 gcaaagttatcatagacat 222  Q
    |||||| ||||||||||||    
T  8996324 gcaaagctatcatagacat 8996306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 16130232 - 16130331
Alignment:
Q  124 tagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatca-tgaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||  ||| ||||||||||| | ||||||||| ||||||||||||||||||||||    
T  16130232 tagttaggagtagattcaagtcaagatttgttgagacatcatggatcttgtcattgaatcttcatttcttcttcatcatttgcaaagttatcatagacat 16130331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 222
Target Start/End: Original strand, 15161101 - 15161220
Alignment:
Q  103 agagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcatg-aatcttcatcttttcttcatcct 201  Q
    |||||||||||||| ||||| || ||||||||||||||   ||||||||||||||||| ||||| |||| | | || ||||||||| |||||||||||||    
T  15161101 agagagaaacacaaagcaagata-ttaggagtagattcttcccaagatttgttgagacatcatgaatcttagcttggaatcttcatattttcttcatcct 15161199  T
Q  202 ttgcaaagttatcatagacat 222  Q
     ||||||| ||||||||||||    
T  15161200 ctgcaaagctatcatagacat 15161220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 89 - 222
Target Start/End: Original strand, 13830272 - 13830405
Alignment:
Q  89 tagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcatgaa-tcttcat 187  Q
    |||||| ||| || |||||||||||||| | | ||| |||||||||||||||   | ||||||||||||||||||||| |||| | |||||| |||||||    
T  13830272 tagggcgtttataaagagagaaacacaaggaagggt-gttaggagtagattcttcctaagatttgttgagacgtcatgaatcttagcatgaaatcttcat 13830370  T
Q  188 cttttcttcatcctttgcaaagttatcatagacat 222  Q
     |||  |||||||||||||||||| ||||||||||    
T  13830371 ttttctttcatcctttgcaaagttttcatagacat 13830405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 188
Target Start/End: Complemental strand, 7612466 - 7612368
Alignment:
Q  90 agggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcatgaatcttcatc 188  Q
    ||||||||||||||||||||||||  | |||||   ||||| ||| |||||   ||||||||||||||||| ||||| ||||  |||||||||||||||    
T  7612466 agggcatttctagagagagaaacatgaagcaagagtgttagaagtggattctttccaagatttgttgagacatcatgaatcttgtcatgaatcttcatc 7612368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 6244175 - 6244236
Alignment:
Q  79 agagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattc 140  Q
    |||||||| ||||| ||||||||| ||||||||||||| ||||||  |||||||||||||||    
T  6244175 agagagagattaggacatttctagtgagagaaacacaaagcaagggtgttaggagtagattc 6244236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 36080218 - 36080280
Alignment:
Q  103 agagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatg 166  Q
    |||||||||||||| ||||||| ||||||||||||||| | |||||| |||||||||| |||||    
T  36080218 agagagaaacacaaagcaaggt-gttaggagtagattctatccaagacttgttgagacatcatg 36080280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 222
Target Start/End: Original strand, 39454092 - 39454221
Alignment:
Q  94 catttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcatg-aatcttcatctttt 192  Q
    ||||||||| |||||||||||||  ||||   ||||| |||||||||   | | ||||||| ||||  ||||| |||| |  ||| |||||||||||||     
T  39454092 catttctagtgagagaaacacaaatcaagcatgttagaagtagattcttcctaggatttgtagagatatcatgaatcttagtatggaatcttcatctttc 39454191  T
Q  193 cttcatcctttgcaaagttatcatagacat 222  Q
     | |||| ||||||||||||||||||||||    
T  39454192 ttccatcttttgcaaagttatcatagacat 39454221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 20836991 - 20837212
Alignment:
Q  3 aacacagcccatataaatagtttttccttctctctctag-atttctattacatttttattcatattttctgcattttagagagaggttagggcatttcta 101  Q
    ||||||||||||||||||||||||||||||||||||| | | | | ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  20836991 aacacagcccatataaatagtttttccttctctctcttgcaatacaattacatttttattcatattttctgcattctagagaggggttagggcatttcta 20837090  T
Q  102 gagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcc 200  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| |||||||||||||||||||||||    
T  20837091 gagagagaaatacaaggcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcatcc 20837190  T
Q  201 tttgcaaagttatcatagacat 222  Q
    ||||||||| ||||||||||||    
T  20837191 tttgcaaagctatcatagacat 20837212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 7653482 - 7653266
Alignment:
Q  7 cagcccatataaatagtttttccttctctctctagatttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctagaga 105  Q
    ||||||||||||||||||||  ||||||| || |   |||||||||||||||||||||||||| |||  ||||||||||||  |||||| ||||||||||    
T  7653482 cagcccatataaatagttttctcttctctttccaatattctattacatttttattcatatttttctgg-ttttagagagagactagggcttttctagaga 7653384  T
Q  106 gagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttg 204  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||| | |||||||||||||||    
T  7653383 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcctttg 7653284  T
Q  205 caaagttatcatagacat 222  Q
    ||||| |||| |||||||    
T  7653283 caaagctatcttagacat 7653266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 3588300 - 3588518
Alignment:
Q  7 cagcccatataaatagtttttccttctctctcta-gattt-ctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctaga 103  Q
    ||||||||||||||||||||  ||||||| || | ||| | |||||||||||||||||||||||| |||  ||||||||||||  |||||| ||||||||    
T  3588300 cagcccatataaatagttttctcttctctttccaagatatgctattacatttttattcatatttttctgg-ttttagagagagactagggcttttctaga 3588398  T
Q  104 gagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctt 202  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||| | |||||||||||||    
T  3588399 gagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcctt 3588498  T
Q  203 tgcaaagttatcatagacat 222  Q
    ||||||| ||||||||||||    
T  3588499 tgcaaagctatcatagacat 3588518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 8615404 - 8615621
Alignment:
Q  7 cagcccatataaatagtttttccttctctctc--tagatttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctaga 103  Q
    ||||||||||||||||||||  ||||||| ||  ||||| |  |||||||||||||||||||||| |||  |||||||||||   |||||| ||||||||    
T  8615404 cagcccatataaatagttttctcttctctttccatagatata-attacatttttattcatatttttctgg-ttttagagagaaactagggcttttctaga 8615501  T
Q  104 gagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctt 202  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||| | |||||||||||||    
T  8615502 gagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttatcatggaatcttcaccctttcttcatcctt 8615601  T
Q  203 tgcaaagttatcatagacat 222  Q
    ||||||| ||||||||||||    
T  8615602 tgcaaagctatcatagacat 8615621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 47 - 222
Target Start/End: Original strand, 9989338 - 9989514
Alignment:
Q  47 tattacatttttattcatattttctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagcca 146  Q
    ||||||||||||||||||||||||    ||||||||||||  |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9989338 tattacatttttattcatattttcctggttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttaggagtagattcaagcca 9989437  T
Q  147 agatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    |||||||||||||| ||||||||||  |||| ||||||||| | |||||||| ||||||||||| ||||||||||||    
T  9989438 agatttgttgagacatcatggatcttgtcatagaatcttcaccctttcttcaacctttgcaaagctatcatagacat 9989514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 44 - 222
Target Start/End: Complemental strand, 27030906 - 27030727
Alignment:
Q  44 ttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaa 142  Q
    |||||||||||||| ||||||||||| |||  ||||||||||||  |||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  27030906 ttctattacattttcattcatatttttctgg-ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttaggagtagattcaa 27030808  T
Q  143 gccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    |||||||||||||||||| ||||||||||  |||| ||||||||| | |||||||||||||||||||| ||||||||||||    
T  27030807 gccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcctttgcaaagctatcatagacat 27030727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 10386332 - 10386114
Alignment:
Q  7 cagcccatataaatagtttttccttctctctcta-gatttct-attacatttttattcatatttt-ctgcattttagagagaggttagggcatttctaga 103  Q
    ||||||||||||||||||||  ||||||| || | ||| | | |||||||||||||||||||||| |||  ||||||||||||  |||||| ||||||||    
T  10386332 cagcccatataaatagttttctcttctctttccatgatatattattacatttttattcatatttttctgg-ttttagagagagactagggcttttctaga 10386234  T
Q  104 gagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctt 202  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||  |||| ||||||||| | |||||||||||||    
T  10386233 gagagaaacacaaagcaaggtagttaggagtagattcgagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcctt 10386134  T
Q  203 tgcaaagttatcatagacat 222  Q
    ||||||| ||||||||||||    
T  10386133 tgcaaagctatcatagacat 10386114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 75 - 222
Target Start/End: Complemental strand, 36469626 - 36469479
Alignment:
Q  75 ttttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcat 174  Q
    ||||||||||||  |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |    
T  36469626 ttttagagagagactagggcttttctagagagagaaacacaa-gcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgt 36469528  T
Q  175 cat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  36469527 catagaatcttcatcttttcttcatcctttgcaaagctatcatagacat 36469479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 52308349 - 52308129
Alignment:
Q  9 gcccatataaatagtttttccttctctctctag-----at-ttctattacatttttattcatattttctgcattttagagagaggttagggcatttctag 102  Q
    |||||| |||||||||||||||||||| |||||     || ||||||||||||||||||||||||||  |  ||||||||||||  |||||| |||||||    
T  52308349 gcccatttaaatagtttttccttctctttctaggatatatattctattacatttttattcatatttttcgagttttagagagagactagggcttttctag 52308250  T
Q  103 agagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcct 201  Q
    |||||||||||||| ||||||||||||||||||||||| |||||| ||||||| |||| ||||||||||  |||| ||||||||| | ||||||||||||    
T  52308249 agagagaaacacaaagcaaggtagttaggagtagattctagccaatatttgtttagacatcatggatcttgtcatggaatcttcaccctttcttcatcct 52308150  T
Q  202 ttgcaaagttatcatagacat 222  Q
    |||||||| |||| |||||||    
T  52308149 ttgcaaagctatcttagacat 52308129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 44 - 222
Target Start/End: Original strand, 23385335 - 23385514
Alignment:
Q  44 ttctattacatttttattcatattttctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaag 143  Q
    ||||||||||||||||||||||||||     ||||||||||||  |||||| |||||||||||||||||| || ||||||||||||||||||||||||||    
T  23385335 ttctattacatttttattcatatttttcaggttttagagagagactagggcttttctagagagagaaacaaaaagcaaggtagttaggagtagattcaag 23385434  T
Q  144 ccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||||||||||||||||| ||||||||||  |||| |||||| || | |||||||||||||||||||| ||||||||||||    
T  23385435 ccaagatttgttgagacatcatggatcttgtcatagaatctacaccctttcttcatcctttgcaaagctatcatagacat 23385514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 75 - 222
Target Start/End: Complemental strand, 27850741 - 27850594
Alignment:
Q  75 ttttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcat 174  Q
    ||||||||||||  |  ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |    
T  27850741 ttttagagagagactgaggcttttctagagagagaaacacaa-gcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgt 27850643  T
Q  175 cat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||| ||||||||||| |||||||||||||||||||| ||||||||||||    
T  27850642 catggaatcttcatcatttcttcatcctttgcaaagctatcatagacat 27850594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 63 - 222
Target Start/End: Original strand, 33247946 - 33248106
Alignment:
Q  63 atattttctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgt 162  Q
    ||||||||||  ||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |    
T  33247946 atattttctggtttttagagagaggttggggcatttttagagagagaaacacaaagcaaggtagttaggagtagattcaacccaagatttgttgagacat 33248045  T
Q  163 catggatctcatca-tgaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    |||| || |   || ||||||||||||| || |||||||||||||||| ||||||||||||    
T  33248046 catgaatttaggcattgaatcttcatctctttttcatcctttgcaaagctatcatagacat 33248106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 20963846 - 20963711
Alignment:
Q  75 ttttagagagaggttagggcattt-ctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctca 173  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||      
T  20963846 ttttagagagaggttagggcattttctagagagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttg 20963747  T
Q  174 tcat-gaatcttcatcttttcttcatcctttgcaaa 208  Q
    || | ||||||||||||| |||||||| ||||||||    
T  20963746 tcgtggaatcttcatcttctcttcatcatttgcaaa 20963711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 37471857 - 37471730
Alignment:
Q  96 tttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttct 194  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||| |||||||||  |||| |||||||||||||||||    
T  37471857 tttctagagagagaaacacaaagcaaagtagttaggagtagattcaagccaaaatttgttgagacgacatggatcttgtcatggaatcttcatcttttct 37471758  T
Q  195 tcatcctttgcaaagttatcatagacat 222  Q
    ||||||||||||||| ||||||||||||    
T  37471757 tcatcctttgcaaagctatcatagacat 37471730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 65 - 222
Target Start/End: Original strand, 22097627 - 22097785
Alignment:
Q  65 attttctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtca 164  Q
    ||||||||  |||||||||||   |||| | ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||    
T  22097627 attttctggtttttagagagaaactaggacttttctagagagagaaacacaaagtaaggtagttaggagtagattcaagccaagatttgttgagacatca 22097726  T
Q  165 tggatctcatcat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    |||||||  |||| ||||||||| | |||||||||||||||||||| ||||||||||||    
T  22097727 tggatcttgtcatggaatcttcaccctttcttcatcctttgcaaagctatcatagacat 22097785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 66 - 222
Target Start/End: Complemental strand, 48168394 - 48168237
Alignment:
Q  66 ttttctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcat 165  Q
    |||||||  ||||||||||||  |||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||     
T  48168394 ttttctggtttttagagagagactagggcttttctagagagagaaacacgaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcag 48168295  T
Q  166 ggatctcatcat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    |||||| ||||| |||||| ||||||  ||||||||| ||||||| ||||||||||||    
T  48168294 ggatcttatcatggaatctgcatcttcacttcatcctatgcaaagctatcatagacat 48168237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 103 - 222
Target Start/End: Original strand, 45527645 - 45527765
Alignment:
Q  103 agagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcct 201  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| |||||||||||||||| |||||||    
T  45527645 agagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcatcatcct 45527744  T
Q  202 ttgcaaagttatcatagacat 222  Q
    |||||||| ||||||||||||    
T  45527745 ttgcaaagctatcatagacat 45527765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 208
Target Start/End: Original strand, 23193921 - 23194027
Alignment:
Q  103 agagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcct 201  Q
    |||||||||||||| |||||||||||| |||||||||||| ||||||||  ||||||| ||||| ||||  |||| ||||||||||||||||||||||||    
T  23193921 agagagaaacacaaggcaaggtagttaagagtagattcaacccaagattcattgagacatcatgaatcttgtcatggaatcttcatcttttcttcatcct 23194020  T
Q  202 ttgcaaa 208  Q
    |||||||    
T  23194021 ttgcaaa 23194027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 132 - 222
Target Start/End: Complemental strand, 4743135 - 4743044
Alignment:
Q  132 agtagattcaagccaagatttgttgagacgtcatggatctcatcatgaa-tcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||||||||||||||||||||||||||||  ||||||||||  ||||||| ||||||||||||||||||| ||||||||| ||||||||||||    
T  4743135 agtagattcaagccaagatttgttgagagatcatggatcttgtcatgaaatcttcatcttttcttcatcgtttgcaaagctatcatagacat 4743044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 135
Target Start/End: Original strand, 23411616 - 23411707
Alignment:
Q  44 ttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagta 135  Q
    |||||||| ||||||||||||||||| |||  ||||||||||||  |||||| ||||||||||||||||||||| ||||||||||||||||||    
T  23411616 ttctattatatttttattcatatttttctgg-ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttaggagta 23411707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 26335108 - 26335178
Alignment:
Q  96 tttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatg 166  Q
    |||||||||||| |||||||| |||||||||||| |||||||||||| ||||||||||||||||| |||||    
T  26335108 tttctagagagaaaaacacaaagcaaggtagttaagagtagattcaacccaagatttgttgagacatcatg 26335178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 2357161 - 2357261
Alignment:
Q  105 agagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcatg-aatcttcatcttttcttcatccttt 203  Q
    |||||||||||| ||||| | ||||||||||||||||| ||||||||||||||||| |||||  |||   |||| |||||||||||||  ||||||||||    
T  2357161 agagaaacacaaagcaagat-gttaggagtagattcaacccaagatttgttgagacatcatgagtctaggcatgaaatcttcatctttctttcatccttt 2357259  T
Q  204 gc 205  Q
    ||    
T  2357260 gc 2357261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 1232632 - 1232535
Alignment:
Q  126 gttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcatgaa-tcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    |||||||||||||||    |||||||||||||||| ||||| ||||   |||||| |||| |||| ||||||||||||||||||| ||| ||||||||    
T  1232632 gttaggagtagattcttatcaagatttgttgagacatcatgaatctaggcatgaaatctttatctcttcttcatcctttgcaaagctattatagacat 1232535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 49434095 - 49434150
Alignment:
Q  103 agagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgaga 159  Q
    |||||||||||||| ||||||| ||||||||||||||| | ||||||||||||||||    
T  49434095 agagagaaacacaaagcaaggt-gttaggagtagattctacccaagatttgttgaga 49434150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 25804970 - 25805073
Alignment:
Q  93 gcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcatgaatcttcatctttt 192  Q
    |||||||||||||||||||||  | |||||   ||||| ||| |||||   ||||||||||| ||||  ||||| ||||  |||||||||||||||||||    
T  25804970 gcatttctagagagagaaacatgaagcaagagtgttagaagttgattcttcccaagatttgtagagaaatcatgaatcttgtcatgaatcttcatctttt 25805069  T
Q  193 cttc 196  Q
    ||||    
T  25805070 cttc 25805073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 17405248 - 17405187
Alignment:
Q  79 agagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattc 140  Q
    ||||||||  || |||||||| |||||||||||||||| ||||||  |||||||||||||||    
T  17405248 agagagagagtatggcatttcaagagagagaaacacaaagcaagggtgttaggagtagattc 17405187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 4755064 - 4755002
Alignment:
Q  66 ttttctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttag 130  Q
    |||||||  ||||||||||||  |||||| ||||||||||||  ||||||| |||||||||||||    
T  4755064 ttttctggtttttagagagagactagggcttttctagagaga--aacacaaagcaaggtagttag 4755002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 26335007 - 26335039
Alignment:
Q  3 aacacagcccatataaatagtttttccttctct 35  Q
    |||||| ||||||||||||||||||||||||||    
T  26335007 aacacaacccatataaatagtttttccttctct 26335039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 22818316 - 22818530
Alignment:
Q  9 gcccatataaatagtttttccttctctctctagatttctattacatttttattcatattttctgcattttagagagaggttagggcatttctagagagag 108  Q
    ||||||||||||||||||||||||||||||| |     |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22818316 gcccatataaatagtttttccttctctctcttggagattattacatttttattcatattttctgcattctagagagaggttagggcatttctagagagag 22818415  T
Q  109 aaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcatg-aatcttcatcttttcttcatcctttgcaa 207  Q
    ||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||| ||||||||||||||||||||| |||||||    
T  22818416 aaatacaaggcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatgaaatcttcatcttttcttcatcatttgcaa 22818515  T
Q  208 agttatcatagacat 222  Q
    || ||||||||||||    
T  22818516 agctatcatagacat 22818530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 8108153 - 8107932
Alignment:
Q  3 aacacagcccatataaatagtttttccttctctctct--agatttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttc 99  Q
    ||||||||||||||||||||||||||||||| |||||  ||||| |||||||||||||||||||||||| |||  ||||||||||||  |||||| ||||    
T  8108153 aacacagcccatataaatagtttttccttctttctcttaagatt-ctattacatttttattcatatttttctgg-ttttagagagagactagggcttttc 8108056  T
Q  100 tagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcat 198  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||| | |||||||||    
T  8108055 tagagagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcat 8107956  T
Q  199 cctttgcaaagttatcatagacat 222  Q
    ||||||||||| ||||||||||||    
T  8107955 cctttgcaaagctatcatagacat 8107932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 22322061 - 22321844
Alignment:
Q  7 cagcccatataaatagtttttccttctctctctagat-ttctattacatttttattcatattttctgcattttagagagaggttagggcatttctagaga 105  Q
    ||||||||||||||||||||  ||||||| || | || |||||||||||||||||| ||||||||||  ||||||| ||||  |||||| ||||||||||    
T  22322061 cagcccatataaatagttttctcttctctttccatatattctattacatttttattgatattttctggtttttagaaagagactagggcttttctagaga 22321962  T
Q  106 gagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatca-tgaatcttcatcttttcttcatcctttg 204  Q
    |||||| |||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||  ||| |||||||||||| |||||||||||||||    
T  22321961 gagaaatacaaagcaagttagttaggagtagattcaagccaagatttgttgagacatcatggatcttttcattgaatcttcatcctttcttcatcctttg 22321862  T
Q  205 caaagttatcatagacat 222  Q
    ||||| ||||||||||||    
T  22321861 caaagctatcatagacat 22321844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 10346567 - 10346349
Alignment:
Q  7 cagcccatataaatagtttttccttctctctctagatt--tctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctaga 103  Q
    ||||||||||||||||||||  ||||||| || | | |  ||||||||||||||||||||||||| |||  ||||||||||||  |||||| ||||||||    
T  10346567 cagcccatataaatagttttctcttctctttccaaaatattctattacatttttattcatatttttctgg-ttttagagagagactagggcttttctaga 10346469  T
Q  104 gagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctt 202  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||| | |||||||||||||    
T  10346468 gagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcctt 10346369  T
Q  203 tgcaaagttatcatagacat 222  Q
    ||||||| ||||||||||||    
T  10346368 tgcaaagctatcatagacat 10346349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 31158537 - 31158320
Alignment:
Q  7 cagcccatataaatagtttttccttctctctctagat-ttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctagag 104  Q
    ||||||||||||||||||||  ||||||| || | |  |||||||||||||||||||||||||| |||  ||||||||||||  |||||| |||||||||    
T  31158537 cagcccatataaatagttttctcttctctttccaaagattctattacatttttattcatatttttctgg-ttttagagagagactagggcttttctagag 31158439  T
Q  105 agagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatccttt 203  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||   |||| ||||||||| | ||||||||||||||    
T  31158438 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcatgtcatggaatcttcaccctttcttcatccttt 31158339  T
Q  204 gcaaagttatcatagacat 222  Q
    |||||| ||||||||||||    
T  31158338 gcaaagctatcatagacat 31158320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 47 - 222
Target Start/End: Original strand, 12190784 - 12190961
Alignment:
Q  47 tattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagcc 145  Q
    ||||||||||||||| | ||||| |||  ||||||||||||  |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12190784 tattacatttttatttacatttttctgatttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttaggagtagattcaagcc 12190883  T
Q  146 aagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||||||||||||||| ||||||||||  |||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  12190884 aagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcatcctttgcaaagctatcatagacat 12190961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 19472523 - 19472307
Alignment:
Q  9 gcccatataaatagtttttccttctctctctagattt---ctattacatttttattcatattttctgcattttagagagaggttagggcatttctagaga 105  Q
    |||||||||||||||||| |||||||||||| ||| |   |||||||||||||||| |||||||||   ||||||||| ||  |||||| ||||||||||    
T  19472523 gcccatataaatagtttt-ccttctctctcttgatatatgctattacatttttattgatattttctagtttttagagatagactagggcttttctagaga 19472425  T
Q  106 gagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttg 204  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  || | ||||||||||| ||||| |||||||||    
T  19472424 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcttggaatcttcatcctttctgcatcctttg 19472325  T
Q  205 caaagttatcatagacat 222  Q
     |||| ||||||||||||    
T  19472324 taaagctatcatagacat 19472307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 2631300 - 2631514
Alignment:
Q  7 cagcccatataaatagtttttccttctctctctagatttctattacatttttattcata-ttttctgcattttagagagaggttagggcatttctagaga 105  Q
    ||||||||||||||||||||  ||||||| || | | |  ||||||||||||||||||| |||||||  ||||||||||||  |||||| ||||||||||    
T  2631300 cagcccatataaatagttttctcttctctttccaaaat--tattacatttttattcatatttttctg-gttttagagagagactagggcttttctagaga 2631396  T
Q  106 gagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttg 204  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||| | |||||||||||||||    
T  2631397 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcctttg 2631496  T
Q  205 caaagttatcatagacat 222  Q
    ||||| ||||||| ||||    
T  2631497 caaagctatcataaacat 2631514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 47 - 222
Target Start/End: Original strand, 12183807 - 12183984
Alignment:
Q  47 tattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagcc 145  Q
    ||||||||||||||| | ||||| |||  ||||||||||||  |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12183807 tattacatttttatttacatttttctggtttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttaggagtagattcaagcc 12183906  T
Q  146 aagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||||||||||||||| |||| |||||  |||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  12183907 aagatttgttgagacatcatagatcttgtcatggaatcttcatcttttcttcatcctttgcaaagctatcatagacat 12183984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 23794994 - 23795212
Alignment:
Q  7 cagcccatataaatagtttttccttctctctcta-gat-ttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctaga 103  Q
    ||||||||||||||||||||  ||||||| || | ||| |||||||||||||||||||||||||| |||  ||||||||||||  |||||  ||||||||    
T  23794994 cagcccatataaatagttttctcttctctttccaagatattctattacatttttattcatatttttctgg-ttttagagagagactagggattttctaga 23795092  T
Q  104 gagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctt 202  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||| | |||||||||||||    
T  23795093 gagagaaactcaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcctt 23795192  T
Q  203 tgcaaagttatcatagacat 222  Q
    ||||||| ||| ||||||||    
T  23795193 tgcaaagctattatagacat 23795212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 66 - 222
Target Start/End: Complemental strand, 31664695 - 31664538
Alignment:
Q  66 ttttctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcat 165  Q
    |||||||  ||||||||||||  |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31664695 ttttctggtttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcat 31664596  T
Q  166 ggatctcatcat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||||||  |||| |||||||||||||||||| ||||||| ||||| ||||||| ||||    
T  31664595 ggatcttgtcatggaatcttcatcttttcttaatcctttacaaagctatcataaacat 31664538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 12090631 - 12090504
Alignment:
Q  96 tttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttct 194  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||  |||| |||||||||||||||||    
T  12090631 tttctagagagagaaacacaaagcaaggtagttaggagtaaattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatcttttct 12090532  T
Q  195 tcatcctttgcaaagttatcatagacat 222  Q
    ||||||||||||||| ||||||||||||    
T  12090531 tcatcctttgcaaagctatcatagacat 12090504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 62 - 222
Target Start/End: Original strand, 24482701 - 24482862
Alignment:
Q  62 catattttctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacg 161  Q
    |||||||||||  ||||||||||||||||| |||||||||||||||||||||||| |||||| ||||| ||||||||  || |||||||||||||||||     
T  24482701 catattttctggtttttagagagaggttagtgcatttctagagagagaaacacaaagcaagggagttatgagtagatcaaacccaagatttgttgagaca 24482800  T
Q  162 tcatggatctcatca-tgaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||||||||||   || ||||||||||||| ||||||||||||||||||| ||||||||||||    
T  24482801 tcatggatctagacattgaatcttcatctcttcttcatcctttgcaaagctatcatagacat 24482862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 65 - 222
Target Start/End: Original strand, 2477618 - 2477776
Alignment:
Q  65 attttctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtca 164  Q
    ||||||||  |||||||||||   || ||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||    
T  2477618 attttctggtttttagagagaaaatatggcttttctagagagagaaacacaaagcaaggtagttaggagtagattcaacccaagatttgttgagacatca 2477717  T
Q  165 tggatctcatca-tgaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    |||||||   || ||||||||||||||||| ||||||||||||||| ||||||||||||    
T  2477718 tggatctaggcattgaatcttcatcttttcctcatcctttgcaaagctatcatagacat 2477776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 44 - 170
Target Start/End: Original strand, 6172466 - 6172592
Alignment:
Q  44 ttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaa 142  Q
    |||||||||||||||||||||||||| ||| |||||||||||||  |||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  6172466 ttctattacatttttattcatatttttctg-attttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttaggagtagattcaa 6172564  T
Q  143 gccaagatttgttgagacgtcatggatc 170  Q
    |||||||||||||||||| |||| ||||    
T  6172565 gccaagatttgttgagacatcatagatc 6172592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 44 - 169
Target Start/End: Original strand, 33160121 - 33160246
Alignment:
Q  44 ttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaa 142  Q
    |||||||||||||||||||||||||| |||  ||||||||||||  |||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  33160121 ttctattacatttttattcatatttttctgg-ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttaggagtagattcaa 33160219  T
Q  143 gccaagatttgttgagacgtcatggat 169  Q
    |||||||||||||||||| ||||||||    
T  33160220 gccaagatttgttgagacatcatggat 33160246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 75 - 222
Target Start/End: Complemental strand, 3545071 - 3544924
Alignment:
Q  75 ttttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcat 174  Q
    |||||||||||||||||| |||||||||||||||||||| || | ||||||||||||||||||||||| ||||||||||||||||| ||||||||||       
T  3545071 ttttagagagaggttagg-catttctagagagagaaacaaaaagaaaggtagttaggagtagattcaacccaagatttgttgagacatcatggatctagg 3544973  T
Q  175 ca-tgaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    || | ||||||||||| |||| |||||||||||||| ||||||||||||    
T  3544972 cattaaatcttcatctcttctccatcctttgcaaagctatcatagacat 3544924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 66 - 222
Target Start/End: Complemental strand, 2797762 - 2797607
Alignment:
Q  66 ttttctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcat 165  Q
    |||||||  |||||||||||| ||||||| ||| ||||||||  |||||||  |||||||||||||||||||||||| ||||||||  ||||||| ||||    
T  2797762 ttttctggtttttagagagagattagggcttttttagagaga--aacacaaaacaaggtagttaggagtagattcaacccaagattcattgagacatcat 2797665  T
Q  166 ggatctcatcatg-aatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    | ||||  ||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  2797664 gaatcttgtcatggaatcttcatcttttcttcatcctttgcaaagctatcatagacat 2797607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 66 - 222
Target Start/End: Complemental strand, 45500911 - 45500754
Alignment:
Q  66 ttttctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcat 165  Q
    |||||||  ||||||||||||  || | | ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||    
T  45500911 ttttctggtttttagagagagactatgacttttctagagagagaaacacaaagcaaggtagttatgagtagattcaagccaagatttgttgagacatcat 45500812  T
Q  166 ggatctcatca-tgaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
     |||||  ||| ||||||||||| | ||||||||| ||||||||| ||||| ||||||    
T  45500811 agatcttgtcattgaatcttcatttcttcttcatcatttgcaaagctatcacagacat 45500754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 22909118 - 22909235
Alignment:
Q  105 agagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatccttt 203  Q
    |||||||||||| ||||||| ||||||||||||||||| | ||||||||||||||| ||||||||||  |||| ||||||||||||||||||||||||||    
T  22909118 agagaaacacaaagcaaggt-gttaggagtagattcaatctaagatttgttgagacatcatggatctagtcattgaatcttcatcttttcttcatccttt 22909216  T
Q  204 gcaaagttatcatagacat 222  Q
    |||||| ||||||||||||    
T  22909217 gcaaagctatcatagacat 22909235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 74 - 222
Target Start/End: Original strand, 31878570 - 31878718
Alignment:
Q  74 attttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctca 173  Q
    |||||||||||||  ||| || ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||  ||||||| ||||| ||||      
T  31878570 attttagagagagactagagcttttctagagagagaaacacaaagcaaggtagttaggagtagattcaacccaagattcattgagacatcatgaatcttg 31878669  T
Q  174 tcat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    |||| ||||||||||||||| |||||||||||||||  ||||| ||||||    
T  31878670 tcatggaatcttcatctttt-ttcatcctttgcaaaactatcaaagacat 31878718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 100 - 222
Target Start/End: Original strand, 1953952 - 1954075
Alignment:
Q  100 tagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatca-tgaatcttcatcttttcttcat 198  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||| ||||||||||  ||| ||||||||||  | ||||||||    
T  1953952 tagagagagaaacacaaagcaatgtagttaggagtagattcaagccaagatttgttaagacatcatggatcttgtcattgaatcttcaattcttcttcat 1954051  T
Q  199 cctttgcaaagttatcatagacat 222  Q
    |||||| |||| ||||||||||||    
T  1954052 cctttgaaaagctatcatagacat 1954075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 1274588 - 1274705
Alignment:
Q  105 agagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatccttt 203  Q
    |||||||||||| | ||||| |||| ||||||||| ||  |||||||||||||||| |||||||||||  ||| ||||||| |||| ||||||||||| |    
T  1274588 agagaaacacaaagtaaggt-gttatgagtagatttaactcaagatttgttgagacatcatggatctcggcattgaatctttatctcttcttcatcctat 1274686  T
Q  204 gcaaagttatcatagacat 222  Q
    |||||| ||||||||||||    
T  1274687 gcaaagctatcatagacat 1274705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 19063514 - 19063631
Alignment:
Q  105 agagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatca-tgaatcttcatcttttcttcatccttt 203  Q
    |||||||||||| | ||||| ||||||||||||||||| | || |||||||||||| |||||||||| | || ||||||||||||| |||||||| || |    
T  19063514 agagaaacacaaagtaaggt-gttaggagtagattcaacctaaaatttgttgagacatcatggatctaagcattgaatcttcatctcttcttcattctat 19063612  T
Q  204 gcaaagttatcatagacat 222  Q
    | |||| ||||||||||||    
T  19063613 gtaaagctatcatagacat 19063631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 19472275 - 19472233
Alignment:
Q  180 atcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||||||||| ||||||||||||||| |||| ||||||||||||    
T  19472275 atcttcatcctttcttcatcctttgtaaagctatcatagacat 19472233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 196
Target Start/End: Complemental strand, 28958622 - 28958516
Alignment:
Q  90 agggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcatgaatcttcatct 189  Q
    ||||||||||||||||||||||||  | |||||   ||||| ||| |||||   ||||||||||| ||||  | ||| ||||  |||||||||||||| |    
T  28958622 agggcatttctagagagagaaacatgaagcaagagtgttagaagtggattcttcccaagatttgtagagaaattatgaatcttgtcatgaatcttcatat 28958523  T
Q  190 tttcttc 196  Q
    |||||||    
T  28958522 tttcttc 28958516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 222
Target Start/End: Complemental strand, 29032945 - 29032828
Alignment:
Q  105 agagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatccttt 203  Q
    |||||||||||| | ||||| ||||||||||||||| |  |||||||||||||||| |||||  |||   ||| ||||||||||||||  |||||| |||    
T  29032945 agagaaacacaaagtaaggt-gttaggagtagattctattcaagatttgttgagacatcatgagtctagacatggaatcttcatctttctttcatcattt 29032847  T
Q  204 gcaaagttatcatagacat 222  Q
    || ||| |  |||||||||    
T  29032846 gccaagcttgcatagacat 29032828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 6639 - 6850
Alignment:
Q  12 catataaatagtttttccttctctctctagatttctattacatttttattcatattttctgcattttagagagaggttagggcatttctagagagagaaa 111  Q
    |||||||||||||||||||||||||||| ||    |||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||    
T  6639 catataaatagtttttccttctctctcttgaggattattacatttttattcatattttctgcattctagagagatgttagggtatttctagagagagaaa 6738  T
Q  112 cacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttgcaaagt 210  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||||||||||||||||||||||||||     
T  6739 tacaaggcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcatcctttgcaaagc 6838  T
Q  211 tatcatagacat 222  Q
    ||||||||||||    
T  6839 tatcatagacat 6850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 41577596 - 41577375
Alignment:
Q  3 aacacagcccatataaatagtttttccttctctctctagat-ttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttct 100  Q
    ||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||| |||  ||||||||||||  |||||| |||||    
T  41577596 aacacagcccatataaatagtttttccttctctctcttgagattctattacatttttattcatatttttctgg-ttttagagagagactagggcttttct 41577498  T
Q  101 agagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatc 199  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||| | ||||||||||    
T  41577497 agagagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatc 41577398  T
Q  200 ctttgcaaagttatcatagacat 222  Q
    |||||||||| ||||||||||||    
T  41577397 ctttgcaaagctatcatagacat 41577375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 16579982 - 16580203
Alignment:
Q  3 aacacagcccatataaatagtttttccttctctctctagat-ttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttct 100  Q
    ||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||| |||  ||||||||||||  |||||  |||||    
T  16579982 aacacagcccatataaatagtttttccttctctctcttgctattctattacatttttattcatatttttctgg-ttttagagagagactagggattttct 16580080  T
Q  101 agagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatc 199  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||| | ||||||||||    
T  16580081 agagagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatc 16580180  T
Q  200 ctttgcaaagttatcatagacat 222  Q
    |||||||||| ||||||||||||    
T  16580181 ctttgcaaagctatcatagacat 16580203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 11309249 - 11309031
Alignment:
Q  3 aacacagcccatataaatagtttttccttctctctctagatttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttcta 101  Q
    ||||||||||||||||||||||||||||||||| ||| || |  ||||||||||||||||||||||| |||  ||||||||||||  |||||| ||||||    
T  11309249 aacacagcccatataaatagtttttccttctctttctggaatattattacatttttattcatatttttctgg-ttttagagagagactagggcttttcta 11309151  T
Q  102 gagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcc 200  Q
    ||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| |||||| || | |||||||||||    
T  11309150 gagaga--aacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatctccaccctttcttcatcc 11309053  T
Q  201 tttgcaaagttatcatagacat 222  Q
    ||||||||| ||||||||||||    
T  11309052 tttgcaaagctatcatagacat 11309031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 9068428 - 9068211
Alignment:
Q  7 cagcccatataaatagtttttccttctctctcta--gatttctattacatttttattcata-ttttctgcattttagagagaggttagggcatttctaga 103  Q
    ||||||||||||||||||||  ||||||| || |  || |||||||||||||||||||||| |||||||  ||||||||||||  |||||| ||||||||    
T  9068428 cagcccatataaatagttttctcttctctttccaatga-ttctattacatttttattcatatttttctg-gttttagagagagactagggcttttctaga 9068331  T
Q  104 gagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctt 202  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||| | |||||||||||||    
T  9068330 gagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcctt 9068231  T
Q  203 tgcaaagttatcatagacat 222  Q
    ||||||| ||||||||||||    
T  9068230 tgcaaagctatcatagacat 9068211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 22180502 - 22180719
Alignment:
Q  7 cagcccatataaatagtttttccttctctctctagat-ttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctagag 104  Q
    ||||||| ||||||||||||  ||||||| || |  | |||||||||||||||||||||||||| |||  ||||||||||||  |||||| |||||||||    
T  22180502 cagcccaaataaatagttttctcttctctttccaactattctattacatttttattcatatttttctgg-ttttagagagagactagggcttttctagag 22180600  T
Q  105 agagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatccttt 203  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||||| ||||||||||||||    
T  22180601 agagaaacaaaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcatcctttcttcatccttt 22180700  T
Q  204 gcaaagttatcatagacat 222  Q
    |||||| ||||||||||||    
T  22180701 gcaaagctatcatagacat 22180719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 47 - 222
Target Start/End: Original strand, 27347968 - 27348144
Alignment:
Q  47 tattacatttttattcata-ttttctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagcc 145  Q
    ||||||||||||||||||| |||||||  ||||||||||||  |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27347968 tattacatttttattcataattttctgg-ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttaggagtagattcaagcc 27348066  T
Q  146 aagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||||||||||||||| ||||||||||  |||| ||||||||| | |||||||||||||||||||||||||||||||||    
T  27348067 aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcctttgcaaagttatcatagacat 27348144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 28369993 - 28370211
Alignment:
Q  7 cagcccatataaatagtttttccttctctctcta--gatttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctaga 103  Q
    ||||||||||||||||||||  ||||||| || |  |  ||| |||||||||||||||||||||| |||  ||||||||||||  |||||| ||||||||    
T  28369993 cagcccatataaatagttttctcttctctttccaatggattcaattacatttttattcatatttttctgg-ttttagagagagactagggcttttctaga 28370091  T
Q  104 gagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctt 202  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||| | |||||||||||||    
T  28370092 gagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcctt 28370191  T
Q  203 tgcaaagttatcatagacat 222  Q
    ||||||| ||||||||||||    
T  28370192 tgcaaagctatcatagacat 28370211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 28926405 - 28926187
Alignment:
Q  7 cagcccatataaatagtttttccttctctctcta--gatttctattacatttttattcatat-tttctgcattttagagagaggttagggcatttctaga 103  Q
    ||||||||||||||||||||  ||||||| || |  ||||  | |||||||||||||||||| ||||||  ||||||||||||  |||||| ||||||||    
T  28926405 cagcccatataaatagttttctcttctctttccaatgattcattttacatttttattcatatatttctgg-ttttagagagagactagggcttttctaga 28926307  T
Q  104 gagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctt 202  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||| | |||||||||||||    
T  28926306 gagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcctt 28926207  T
Q  203 tgcaaagttatcatagacat 222  Q
    ||||||| ||||||||||||    
T  28926206 tgcaaagctatcatagacat 28926187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 46 - 222
Target Start/End: Complemental strand, 8743504 - 8743327
Alignment:
Q  46 ctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagc 144  Q
    |||||||||||||||||||||||| |||  ||||||||||||  |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8743504 ctattacatttttattcatatttttctgg-ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttaggagtagattcaagc 8743406  T
Q  145 caagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    |||||||||||||||| ||||||||||  |||| ||||||||| | |||||||||||||||||||| ||||||||||||    
T  8743405 caagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcctttgcaaagctatcatagacat 8743327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 3298702 - 3298920
Alignment:
Q  7 cagcccatataaatagtttttccttctctctctagatttctattacatttttattcatatttt-ctgcatttt-agagagaggttagggcatttctagag 104  Q
    ||||||||||||||||||||  ||||||| || | |    ||||||||||||||||||||||| |||  |||  ||||||||  |||||| |||||||||    
T  3298702 cagcccatataaatagttttctcttctctttccataggattattacatttttattcatatttttctggttttagagagagagactagggcttttctagag 3298801  T
Q  105 agagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatccttt 203  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||| | ||||||||||| ||    
T  3298802 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatagaatcttcaccctttcttcatccatt 3298901  T
Q  204 gcaaagttatcatagacat 222  Q
    |||||| ||||||||||||    
T  3298902 gcaaagctatcatagacat 3298920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 75 - 222
Target Start/End: Original strand, 16958521 - 16958668
Alignment:
Q  75 ttttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcat 174  Q
    ||||||||||||| |||||| ||| ||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||| |||||  |||       
T  16958521 ttttagagagaggctagggctttt-tagagagagaaacacaaagcaaggtagttaagagtagattcaacccaagatttgttgagacatcatgagtctagg 16958619  T
Q  175 cat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  16958620 catggaatcttcatcttttcttcatcctttgcaaagctatcatagacat 16958668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 75 - 222
Target Start/End: Original strand, 12538126 - 12538275
Alignment:
Q  75 ttttagagagaggttagggcattt-ctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctca 173  Q
    |||| ||||||||||||||||||| ||||||||||||||||||  |||||||||||||| ||||||||||| | ||||||||||||| ||||| ||||      
T  12538126 ttttggagagaggttagggcattttctagagagagaaacacaaatcaaggtagttaggattagattcaagctatgatttgttgagacatcatgaatcttg 12538225  T
Q  174 tca-tgaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||| ||||||||||||| ||||||||| ||||||||| |||| |||||||    
T  12538226 tcattgaatcttcatctcttcttcatcatttgcaaagctatcttagacat 12538275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 105 - 222
Target Start/End: Complemental strand, 22243406 - 22243288
Alignment:
Q  105 agagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatca-tgaatcttcatcttttcttcatccttt 203  Q
    ||||||||||||  |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||   || |||||||||||||||||||||||||||    
T  22243406 agagaaacacaaaacaaggtagttagaagtagattcaacccaagatttgttgagacatcatggatctaggcattgaatcttcatcttttcttcatccttt 22243307  T
Q  204 gcaaagttatcatagacat 222  Q
    |||||| ||||||||||||    
T  22243306 gcaaagctatcatagacat 22243288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 103 - 222
Target Start/End: Original strand, 17992892 - 17993012
Alignment:
Q  103 agagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcct 201  Q
    |||||||||||||| |||||||||||| |||||||||||| ||||||||  ||||||| ||||| ||||  |||| ||||||||||||||||||||||||    
T  17992892 agagagaaacacaaggcaaggtagttaagagtagattcaatccaagattcattgagacatcatgaatcttgtcatggaatcttcatcttttcttcatcct 17992991  T
Q  202 ttgcaaagttatcatagacat 222  Q
    |||||||| ||||||||||||    
T  17992992 ttgcaaagctatcatagacat 17993012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 24040707 - 24040834
Alignment:
Q  96 tttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatca-tgaatcttcatcttttct 194  Q
    |||||||||||||||||| ||  ||| |||||||| ||||||||||||||||||||||||||||| ||||||||||  ||| ||||||||||| | |||     
T  24040707 tttctagagagagaaacataaatcaatgtagttagaagtagattcaagccaagatttgttgagacatcatggatcttgtcattgaatcttcatttcttcc 24040806  T
Q  195 tcatcctttgcaaagttatcatagacat 222  Q
    ||||||||||||||| ||||||||||||    
T  24040807 tcatcctttgcaaagctatcatagacat 24040834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 4862114 - 4861994
Alignment:
Q  103 agagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcatg-aatcttcatcttttcttcatcct 201  Q
    |||||||||||||| | |||||||||| |||||||||||| ||||||||  ||||||| ||||| ||||  ||||| |||||||||||||||||||||||    
T  4862114 agagagaaacacaaggtaaggtagttaagagtagattcaacccaagattcattgagacatcatgaatcttgtcatggaatcttcatcttttcttcatcct 4862015  T
Q  202 ttgcaaagttatcatagacat 222  Q
    |||||||| ||||||||||||    
T  4862014 ttgcaaagctatcatagacat 4861994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 89 - 188
Target Start/End: Complemental strand, 34006938 - 34006838
Alignment:
Q  89 tagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcat 187  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||  |||| ||||||||||    
T  34006938 tagggcttttctagagagagaaacacaaagcaaggtagttaggagtagattaaagccaagatttgttgagacatcatggatcttgtcatggaatcttcat 34006839  T
Q  188 c 188  Q
    |    
T  34006838 c 34006838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 105 - 222
Target Start/End: Complemental strand, 22234012 - 22233895
Alignment:
Q  105 agagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcatg-aatcttcatcttttcttcatccttt 203  Q
    |||||||||||| ||||||| ||||||||||||||| | ||||||||||||||||| ||||| ||||   |||| |||||||||||||||||||||||||    
T  22234012 agagaaacacaaagcaaggt-gttaggagtagattctacccaagatttgttgagacatcatgaatctaggcatggaatcttcatcttttcttcatccttt 22233914  T
Q  204 gcaaagttatcatagacat 222  Q
    |||||| ||||||||||||    
T  22233913 gcaaagctatcatagacat 22233895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 13509964 - 13510081
Alignment:
Q  105 agagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatccttt 203  Q
    |||||||||||| ||||| | ||||| ||||||||||| | ||||||||||||||| ||||||||||   ||| ||||||||||||||||||||||||||    
T  13509964 agagaaacacaaagcaagat-gttagaagtagattcaacctaagatttgttgagacatcatggatctaggcattgaatcttcatcttttcttcatccttt 13510062  T
Q  204 gcaaagttatcatagacat 222  Q
    |||||| ||||||||||||    
T  13510063 gcaaagctatcatagacat 13510081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 13599494 - 13599611
Alignment:
Q  105 agagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatccttt 203  Q
    |||||||||||| ||||| | ||||| ||||||||||| | ||||||||||||||| ||||||||||   ||| ||||||||||||||||||||||||||    
T  13599494 agagaaacacaaagcaagat-gttagaagtagattcaacctaagatttgttgagacatcatggatctaggcattgaatcttcatcttttcttcatccttt 13599592  T
Q  204 gcaaagttatcatagacat 222  Q
    |||||| ||||||||||||    
T  13599593 gcaaagctatcatagacat 13599611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 222
Target Start/End: Complemental strand, 22222828 - 22222709
Alignment:
Q  105 agagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcatg-aatcttcatct--tttcttcatcct 201  Q
    |||||||||||| ||||||| ||||||||||||||| | ||||||||||||||||| ||||| ||||   |||| |||||||||||  ||||||||||||    
T  22222828 agagaaacacaaagcaaggt-gttaggagtagattctacccaagatttgttgagacatcatgaatctaggcatggaatcttcatctcttttcttcatcct 22222730  T
Q  202 ttgcaaagttatcatagacat 222  Q
    |||||||| ||||||||||||    
T  22222729 ttgcaaagctatcatagacat 22222709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 222
Target Start/End: Complemental strand, 22229170 - 22229051
Alignment:
Q  105 agagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcatg-aatcttcatct--tttcttcatcct 201  Q
    |||||||||||| ||||||| ||||||||||||||| | ||||||||||||||||| ||||| ||||   |||| |||||||||||  ||||||||||||    
T  22229170 agagaaacacaaagcaaggt-gttaggagtagattctacccaagatttgttgagacatcatgaatctaggcatggaatcttcatctcttttcttcatcct 22229072  T
Q  202 ttgcaaagttatcatagacat 222  Q
    |||||||| ||||||||||||    
T  22229071 ttgcaaagctatcatagacat 22229051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 92 - 218
Target Start/End: Original strand, 1607272 - 1607399
Alignment:
Q  92 ggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatctt 190  Q
    |||||||||||| |||||||||||| ||||||  |||| ||||| ||||   | ||||||||||||||| ||||| |||| | ||| |||||||||||||    
T  1607272 ggcatttctagatagagaaacacaaagcaagggtgttaagagtatattcttcctaagatttgttgagacatcatgaatcttagcatggaatcttcatctt 1607371  T
Q  191 ttcttcatcctttgcaaagttatcatag 218  Q
    |  |||||||||||||||| | ||||||    
T  1607372 tctttcatcctttgcaaagctttcatag 1607399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 75 - 196
Target Start/End: Original strand, 21692140 - 21692258
Alignment:
Q  75 ttttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcat 174  Q
    ||||||||||||   ||||||||||||||||||||||||  | |||||   ||||| ||| |||||   ||||||||||||||||| ||||| ||||  |    
T  21692140 ttttagagagag---agggcatttctagagagagaaacatgaagcaagagtgttagaagtggattctttccaagatttgttgagacatcatgaatcttgt 21692236  T
Q  175 catgaatcttcatcttttcttc 196  Q
    ||||||||||||||||||||||    
T  21692237 catgaatcttcatcttttcttc 21692258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 36737151 - 36737110
Alignment:
Q  101 agagagagaaacacaatgcaaggtagttaggagtagattcaa 142  Q
    |||||||||||||||| ||||| |||||||||||||||||||    
T  36737151 agagagagaaacacaaagcaagatagttaggagtagattcaa 36737110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0336 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: scaffold0336
Description:

Target: scaffold0336; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 8639 - 8860
Alignment:
Q  3 aacacagcccatataaatagtttttccttctctctctagatttcta-ttacatttttattcatattttctgcattttagagagaggttagggcatttcta 101  Q
    ||||||||||||||||||||||||||||||||||||| ||| |  | ||||||||||||||||||||||    ||||||||||||  |||||| ||||||    
T  8639 aacacagcccatataaatagtttttccttctctctcttgatatagaattacatttttattcatattttcctggttttagagagagactagggcttttcta 8738  T
Q  102 gagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcc 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||| | |||||||||||    
T  8739 gagagagaaacacaaggcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatagaatcttcaccctttcttcatcc 8838  T
Q  201 tttgcaaagttatcatagacat 222  Q
    ||||||||| ||||||||||||    
T  8839 tttgcaaagctatcatagacat 8860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 31845877 - 31846098
Alignment:
Q  3 aacacagcccatataaatagtttttccttctctctct--agatttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttc 99  Q
    |||||||||||||||||||||||||||||||||||||  |||| | ||||||||||||||||||||||| |||  ||||||||||||  |||||| ||||    
T  31845877 aacacagcccatataaatagtttttccttctctctcttaagatat-tattacatttttattcatatttttctgg-ttttagagagagactagggcttttc 31845974  T
Q  100 tagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcat 198  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||| | |||||||||    
T  31845975 tagagagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcat 31846074  T
Q  199 cctttgcaaagttatcatagacat 222  Q
    ||||||||||| ||||||||||||    
T  31846075 cctttgcaaagctatcatagacat 31846098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 33434512 - 33434721
Alignment:
Q  16 taaatagtttttccttctctctctagatt--tctattacatttttattcatattttctgcattttagagagaggttagggcatttctagagagagaaaca 113  Q
    |||||||||||||||||||| |||| |||  | ||||||||||||||| ||||||||||  ||||||||||||  |||||| ||||||||||||||||||    
T  33434512 taaatagtttttccttctctttctaaattaatatattacatttttattgatattttctggtttttagagagagactagggcttttctagagagagaaaca 33434611  T
Q  114 caatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttgcaaagtta 212  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||| | |||||||||||||||||||| ||    
T  33434612 caaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcctttgcaaagcta 33434711  T
Q  213 tcatagacat 222  Q
    ||||||||||    
T  33434712 tcatagacat 33434721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 34456198 - 34456415
Alignment:
Q  7 cagcccatataaatagtttttccttctctctcta-gatttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctagag 104  Q
    ||||||||||||||||||||  ||||||| || | || | |||||||||||||||||||||||| |||  ||||||||||||  |||||| |||||||||    
T  34456198 cagcccatataaatagttttctcttctctttccaagaatcctattacatttttattcatatttttctgg-ttttagagagagactagggcttttctagag 34456296  T
Q  105 agagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatccttt 203  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||| | ||||||||||||||    
T  34456297 agagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 34456396  T
Q  204 gcaaagttatcatagacat 222  Q
    |||||| ||||||||||||    
T  34456397 gcaaagctatcatagacat 34456415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 7314865 - 7315083
Alignment:
Q  7 cagcccatataaatagtttttccttctctctctagatt--tctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctaga 103  Q
    ||||||||||||||||||||  ||||||| || | | |  ||||||||||||||||||||||||| |||  ||||||||||||  |||||| ||||||||    
T  7314865 cagcccatataaatagttttctcttctctttccaaactattctattacatttttattcatatttttctgg-ttttagagagagactagggcttttctaga 7314963  T
Q  104 gagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctt 202  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||| | |||||||||||||    
T  7314964 gagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcctt 7315063  T
Q  203 tgcaaagttatcatagacat 222  Q
    ||||||| ||||||||||||    
T  7315064 tgcaaagctatcatagacat 7315083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 44 - 222
Target Start/End: Original strand, 9404363 - 9404542
Alignment:
Q  44 ttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaa 142  Q
    |||||||||||||||||||||||||| |||  ||||||||||||  |||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  9404363 ttctattacatttttattcatatttttctgg-ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttaggagtagattcaa 9404461  T
Q  143 gccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    |||||||||||||||||| ||||||||||  |||| ||||||||| | |||||||||||||||||||| ||||||||||||    
T  9404462 gccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcctttgcaaagctatcatagacat 9404542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 30607338 - 30607120
Alignment:
Q  7 cagcccatataaatagtttttccttctctctctagatt--tctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctaga 103  Q
    ||||||||||||||||||||  ||||||| || | | |  ||||||||||||||||||||||||| |||  ||||||||||||  |||||| ||||||||    
T  30607338 cagcccatataaatagttttctcttctctttccaaaatattctattacatttttattcatatttttctgg-ttttagagagagactagggcttttctaga 30607240  T
Q  104 gagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctt 202  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||  |||| ||||||||| | |||||||||||||    
T  30607239 gagagaaacacaaagcaaggtagttaggagtagattcaagccaatatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcctt 30607140  T
Q  203 tgcaaagttatcatagacat 222  Q
    ||||||| ||||||||||||    
T  30607139 tgcaaagctatcatagacat 30607120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 46 - 222
Target Start/End: Complemental strand, 11723497 - 11723320
Alignment:
Q  46 ctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagc 144  Q
    |||||||||||||||||||||||| |||  ||||||||||||  |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11723497 ctattacatttttattcatatttttctgg-ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttaggagtagattcaagc 11723399  T
Q  145 caagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    |||||||||||||||| ||||||||||  |||| ||||||||| | |||||||||||||||||||| ||||||||||||    
T  11723398 caagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcctttgcaaagctatcatagacat 11723320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 47 - 222
Target Start/End: Original strand, 11766697 - 11766873
Alignment:
Q  47 tattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagcc 145  Q
    ||||||||||||||||||||||| |||  ||||||||||||  |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11766697 tattacatttttattcatatttttctgg-ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttaggagtagattcaagcc 11766795  T
Q  146 aagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||||||||||||||| ||||||||||  |||| ||||||||| | |||||||||||||||||||| ||||||||||||    
T  11766796 aagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcctttgcaaagctatcatagacat 11766873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 66 - 222
Target Start/End: Complemental strand, 34869947 - 34869790
Alignment:
Q  66 ttttctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcat 165  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||    
T  34869947 ttttctggtttttagagagaggttagggcatttctagagagagaaacacaaaacaaggtagttaggagtagattcaagccaagatttgttgagacatcat 34869848  T
Q  166 ggatctcatca-tgaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||||||  ||| ||||||||||||| || ||||| |||||||||| ||||||||||||    
T  34869847 ggatcttgtcattgaatcttcatctcttattcattctttgcaaagctatcatagacat 34869790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 48 - 222
Target Start/End: Complemental strand, 16904828 - 16904653
Alignment:
Q  48 attacatttttattcatatttt-ctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagcca 146  Q
    |||||||||||||||||||||| |||  ||||||||||||  |||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  16904828 attacatttttattcatatttttctgg-ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttaggggtagattcaagcca 16904730  T
Q  147 agatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    |||||||||||||| ||||||||||  |||| ||||||||| | |||||||||||||||||||| ||||||||||||    
T  16904729 agatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcctttgcaaagctatcatagacat 16904653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 14344372 - 14344587
Alignment:
Q  7 cagcccatataaatagtttttccttctctctctagatttct-attacatttttattcatatttt-ctgcattttagagagaggttagggcatttctagag 104  Q
    ||||||||||||||||||||  |||||||  | | || | | |||||||||||||||||||||| |||  |||||||||||   |||||| |||||||||    
T  14344372 cagcccatataaatagttttctcttctcttcccaaatatattattacatttttattcatatttttctgg-ttttagagagac--tagggcttttctagag 14344468  T
Q  105 agagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatccttt 203  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||| | ||||||||||||||    
T  14344469 agagaaactcaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatccttt 14344568  T
Q  204 gcaaagttatcatagacat 222  Q
    |||||| ||||||||||||    
T  14344569 gcaaagctatcatagacat 14344587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 76 - 222
Target Start/End: Complemental strand, 27167288 - 27167141
Alignment:
Q  76 tttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatc 175  Q
    |||||||||||  || ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  ||    
T  27167288 tttagagagagactatggcttttctagagagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgggacatcatggatcttgtc 27167189  T
Q  176 at-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||    
T  27167188 atggaatcttcatcttttcttcatcctttgcaaagctatcatagacat 27167141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 24835636 - 24835853
Alignment:
Q  7 cagcccatataaatagtttttccttctctctctagat-ttctattacatttttattcatattttctgcattttagagagaggttagggcatttctagaga 105  Q
    ||||||||| ||||||||||  ||||||| || |  | || |||||||||||||||||||||||     ||||||||||||  |||||| ||||||||||    
T  24835636 cagcccataaaaatagttttctcttctctttccaattattatattacatttttattcatatttttatggttttagagagagactagggcttttctagaga 24835735  T
Q  106 gagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttg 204  Q
    |||||||||||  ||||||||||||||||||||||||| || ||||||||||||| ||||||||||  |||| ||||||||| | |||||||||||||||    
T  24835736 gagaaacacaaatcaaggtagttaggagtagattcaagtcaggatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcctttg 24835835  T
Q  205 caaagttatcatagacat 222  Q
    ||||| ||||||||||||    
T  24835836 caaagctatcatagacat 24835853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 75 - 222
Target Start/End: Original strand, 6269860 - 6270008
Alignment:
Q  75 ttttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcat 174  Q
    ||||||||||||  |||||| ||||||||||||||||||||| | || ||||||| |||||||||||||||||||||||||| |||  |||||||||  |    
T  6269860 ttttagagagagactagggcttttctagagagagaaacacaaagaaatgtagttatgagtagattcaagccaagatttgttgtgacaacatggatcttgt 6269959  T
Q  175 c-atgaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    | | |||||||||| ||||||||||||||||||||| ||||||||||||    
T  6269960 caaggaatcttcatattttcttcatcctttgcaaagctatcatagacat 6270008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 219
Target Start/End: Complemental strand, 37252065 - 37251952
Alignment:
Q  105 agagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcatg-aatcttcatcttttcttcatccttt 203  Q
    ||||| ||||||  |||||| |||||| |||||||||| ||||||||| ||||||| |||||  ||  |  ||| |||||||||||||||||||||||||    
T  37252065 agagagacacaaaacaaggt-gttaggtgtagattcaacccaagatttattgagacatcatgagtca-aggatggaatcttcatcttttcttcatccttt 37251968  T
Q  204 gcaaagttatcataga 219  Q
    |||||| |||||||||    
T  37251967 gcaaagctatcataga 37251952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 32226833 - 32226898
Alignment:
Q  105 agagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatct 171  Q
    |||||||||||| ||||||| ||||||||||||||||| | || |||||||||||| ||||||||||    
T  32226833 agagaaacacaaagcaaggt-gttaggagtagattcaacctaaaatttgttgagacatcatggatct 32226898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 204
Target Start/End: Complemental strand, 39656201 - 39656100
Alignment:
Q  103 agagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcatg-aatcttcatcttttcttcatcct 201  Q
    |||||||||||||| | ||||| ||||||||||||||| |   ||||||||||||||| ||||| ||||   |||| |||||||||||||  ||||||||    
T  39656201 agagagaaacacaacgtaaggt-gttaggagtagattctacaaaagatttgttgagacatcatgaatctaggcatgaaatcttcatctttctttcatcct 39656103  T
Q  202 ttg 204  Q
    |||    
T  39656102 ttg 39656100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 3 - 219
Target Start/End: Complemental strand, 25916 - 25697
Alignment:
Q  3 aacacagcccatataaatagtttttccttctctctctagatttct-attacatttttattcatatttt-ctgcattttagagagaggttagggcatttct 100  Q
    ||||||| |||||| |||||||||||||||||||||| ||| | | |||||||||||||||||||||| |||  ||||||||||||  ||| || |||||    
T  25916 aacacagtccatattaatagtttttccttctctctcttgatatattattacatttttattcatatttttctggtttttagagagagactagtgcttttct 25817  T
Q  101 agagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatc 199  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||| | ||||||||||    
T  25816 agagagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatc 25717  T
Q  200 ctttgcaaagttatcataga 219  Q
    |||||||||| |||||||||    
T  25716 ctttgcaaagctatcataga 25697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 26515689 - 26515472
Alignment:
Q  7 cagcccatataaatagtttttccttctctctctagat-ttctattacatttttattcatattttctgcattttagagagaggttagggcatttctagaga 105  Q
    ||||||||||||||||||||  ||||| | || |  | |||||||||||||||||| ||||||||||  ||||||||||||  |||||| ||||||||||    
T  26515689 cagcccatataaatagttttctcttctttttccaactattctattacatttttattgatattttctggtttttagagagagactagggcttttctagaga 26515590  T
Q  106 gagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttg 204  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||| | |||||||||||||||    
T  26515589 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcctttg 26515490  T
Q  205 caaagttatcatagacat 222  Q
    ||||| ||||||||||||    
T  26515489 caaagctatcatagacat 26515472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 21596791 - 21596571
Alignment:
Q  8 agcccatataaatagtttttccttctctctctagat-ttctattacatttttattcatattttctgcattttagagagaggttagggcatttctagagag 106  Q
    |||||||||||||||||||  ||||||| || | |  ||| |||||  |||||| ||| |||||||  ||||||||||||||||||||||||||||||||    
T  21596791 agcccatataaatagttttctcttctctttccaaacattccattactgttttatacattttttctggtttttagagagaggttagggcatttctagagag 21596692  T
Q  107 agaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-----gaatcttcatcttttcttcatcct 201  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||| |||||  ||||     ||||||||||||||||||||||||    
T  21596691 agaaacacaaagcatggtagttaggagtagattcaagccaagatttgttgagacatcatagatcttgtcatgcatggaatcttcatcttttcttcatcct 21596592  T
Q  202 ttgcaaagttatcatagacat 222  Q
    |||||||| ||||||||||||    
T  21596591 ttgcaaagctatcatagacat 21596571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 34006405 - 34006620
Alignment:
Q  7 cagcccatataaatagtttttccttctctctctagatttctattacatttttattcatattttctgcattttagagagaggttagggcatttctagagag 106  Q
    ||||||||||||||||||||  ||||||| || | || | | ||||||||||||| ||||||||||  ||||||||| ||  ||| || |||||||| ||    
T  34006405 cagcccatataaatagttttctcttctctttccaaatattt-ttacatttttattgatattttctggtttttagagaaagactagagcttttctagaaag 34006503  T
Q  107 agaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttgc 205  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||  |||| ||||||||||||||||||||||||||||    
T  34006504 agaaacacaaagcaaggtagttaggagtagattcaaaccaagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcatcctttgc 34006603  T
Q  206 aaagttatcatagacat 222  Q
    |||| ||||||||||||    
T  34006604 aaagctatcatagacat 34006620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 46 - 222
Target Start/End: Original strand, 3538988 - 3539165
Alignment:
Q  46 ctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagc 144  Q
    |||||||||||||||||||||||| |||  ||||||||||||  |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3538988 ctattacatttttattcatatttttctgg-ttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttaggagtagattcaagc 3539086  T
Q  145 caagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    |||||||||||||||| ||||||||||  |||| ||||||||| | |||||||||||||||||||| ||||||||||||    
T  3539087 caagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcctttgcaaagctatcatagacat 3539165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 9933063 - 9932849
Alignment:
Q  10 cccatataaatagtttttccttctctctctagat-ttctattacatttttattcatattttctgcattttagagagaggttagggcatttctagagagag 108  Q
    |||||| ||||||||||  ||||||| || | || |||||||||||||||||| ||||||||||  ||||||||||||  |||||| |||||||||||||    
T  9933063 cccataaaaatagttttctcttctctttccaaatattctattacatttttattgatattttctggtttttagagagagactagggcttttctagagagag 9932964  T
Q  109 aaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttgcaa 207  Q
    ||||||||  ||||||||||||||||||||||||| |||||||||||||||| ||||||||||  |||| ||||||||| | ||||||||||||||||||    
T  9932963 aaacacaaaacaaggtagttaggagtagattcaaggcaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcctttgcaa 9932864  T
Q  208 agttatcatagacat 222  Q
    || ||||||| ||||    
T  9932863 agctatcatatacat 9932849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 24161517 - 24161299
Alignment:
Q  7 cagcccatataaatagtttttccttctctctctagat-ttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctagag 104  Q
    ||||||||||||||||||||  ||||||| || |||| ||| |||||||||||||| | ||||| |||  ||||||||||||  || ||| |||||||||    
T  24161517 cagcccatataaatagttttctcttctctttccagatattccattacatttttatttacatttttctggtttttagagagagactatggcttttctagag 24161418  T
Q  105 agagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatccttt 203  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||  |||| ||||||||||||||||||||| |||     
T  24161417 agagaaacacaaagcaaggtagttaggagtagattcaagcaaagatttgttgagacatcatggatcttgtcatggaatcttcatcttttcttcattcttg 24161318  T
Q  204 gcaaagttatcatagacat 222  Q
    |||||| ||||||||||||    
T  24161317 gcaaagctatcatagacat 24161299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 75 - 222
Target Start/End: Original strand, 14479529 - 14479678
Alignment:
Q  75 ttttagagagaggttagggcattt-ctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctca 173  Q
    |||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||      
T  14479529 ttttagagagaggttatggcattttctagagagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatgaatcttg 14479628  T
Q  174 tcat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    |||| |||||||||||||||||||||||||||||||  ||||||||||||    
T  14479629 tcatggaatcttcatcttttcttcatcctttgcaaatctatcatagacat 14479678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 66 - 222
Target Start/End: Complemental strand, 32806965 - 32806806
Alignment:
Q  66 ttttctgcattttagagagaggt--tagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtc 163  Q
    |||||||  |||||||||||| |  |||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  32806965 ttttctggtttttagagagagatactagggctttcctagagagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatc 32806866  T
Q  164 atggatctcatcatg-aatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||||||||  ||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  32806865 atggatcttgtcatgaaatcttcatcttttcttcatcctttgcaaagctatcatagacat 32806806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 7 - 171
Target Start/End: Complemental strand, 26510573 - 26510408
Alignment:
Q  7 cagcccatataaatagtttttccttctctctctagat-ttctattacatttttattcatattttctgcattttagagagaggttagggcatttctagaga 105  Q
    ||||||||||||||||||||  ||||| | || |  | |||||||||||||||||| ||||||||||  ||||||||||||  |||||| ||||||||||    
T  26510573 cagcccatataaatagttttctcttctttttccaactattctattacatttttattgatattttctggtttttagagagagactagggcttttctagaga 26510474  T
Q  106 gagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatct 171  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26510473 gagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatct 26510408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 5989205 - 5989047
Alignment:
Q  65 attttctgcattttagagagaggttagggcattt-ctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtc 163  Q
    ||||||||  ||||||||||||  || ||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||    
T  5989205 attttctggtttttagagagagaatatggcattttctagagagagaaacacaaagcaaggtagttaggagtagattcaacccaagatttgttgagacatc 5989106  T
Q  164 atggatctcatca-tgaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||||||||   || |||||||||||||||| |||||| ||||||||| ||||||||||||    
T  5989105 atggatctaggcattgaatcttcatctttt-ttcatcatttgcaaagctatcatagacat 5989047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 75 - 222
Target Start/End: Original strand, 24878835 - 24878983
Alignment:
Q  75 ttttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcat 174  Q
    |||||||||||   |||| | |||||||||||||||||||||  |||||||||||||||||||||||| ||||||||  ||||||| ||||| ||||       
T  24878835 ttttagagagaaactaggacttttctagagagagaaacacaaaacaaggtagttaggagtagattcaacccaagattcattgagacatcatgaatctagg 24878934  T
Q  175 cat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  24878935 catggaatcttcatcttttcttcatcctttgcaaagctatcatagacat 24878983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 103 - 222
Target Start/End: Original strand, 14270670 - 14270789
Alignment:
Q  103 agagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatca-tgaatcttcatcttttcttcatcct 201  Q
    |||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| |||| |||||   || ||||||||||||||||||||||| |    
T  14270670 agagagaaacacaaagcaaggt-gttaggagtagattcaacccaagatttgttgagacatcatagatctaggcagtgaatcttcatcttttcttcatctt 14270768  T
Q  202 ttgcaaagttatcatagacat 222  Q
    |||||||  ||||||||||||    
T  14270769 ttgcaaaactatcatagacat 14270789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 26604313 - 26604457
Alignment:
Q  79 agagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat- 177  Q
    ||||||||  |||||||||||||||||||||||||||| ||||||  ||||| |||||||||   ||||||||||||||||| ||||| |||| | |||     
T  26604313 agagagagagtagggcatttctagagagagaaacacaaagcaagggtgttagaagtagattcttcccaagatttgttgagacatcatgaatcttagcatg 26604412  T
Q  178 gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||||||||||||||  | |||| ||||||||| | ||||||||||    
T  26604413 gaatcttcatctttcttccatcttttgcaaagctttcatagacat 26604457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 103 - 222
Target Start/End: Original strand, 21631178 - 21631300
Alignment:
Q  103 agagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttca--tcttttcttcatc 199  Q
    ||||||||||| || |||||||||||| ||||||||| ||  |||||||||||||||| ||||||||||   ||| |||||||||  |||||||||||||    
T  21631178 agagagaaacataaagcaaggtagttaagagtagatttaacacaagatttgttgagacatcatggatctagacatagaatcttcatctcttttcttcatc 21631277  T
Q  200 ctttgcaaagttatcatagacat 222  Q
    ||||| |||| ||||||||||||    
T  21631278 ctttgtaaagctatcatagacat 21631300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 25976950 - 25977066
Alignment:
Q  105 agagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatccttt 203  Q
    |||||||||||| ||||||| ||||||||||||||||| ||||||||  ||||||| ||||| ||||  | || ||||||||||||||||||||| ||||    
T  25976950 agagaaacacaaagcaaggt-gttaggagtagattcaacccaagattcattgagacatcatgaatcttgttatggaatcttcatcttttcttcat-cttt 25977047  T
Q  204 gcaaagttatcatagacat 222  Q
    |||||| ||||||||||||    
T  25977048 gcaaagctatcatagacat 25977066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 214
Target Start/End: Original strand, 34913449 - 34913558
Alignment:
Q  105 agagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatca-tgaatcttcatcttttcttcatccttt 203  Q
    |||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| | |||||| |   || ||||||||||||| ||| ||||||| |    
T  34913449 agagaaacacaaagcaaggt-gttaggagtagattcaacccaagatttgttgagacattatggatttaggcattgaatcttcatctcttcatcatcctat 34913547  T
Q  204 gcaaagttatc 214  Q
    |||||| ||||    
T  34913548 gcaaagctatc 34913558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 1454796 - 1454913
Alignment:
Q  105 agagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatccttt 203  Q
    |||||||||||| ||||||| ||||||||||||||| | ||||||||||||||||| |||||  |||   ||| ||||||||||||||  ||||||||||    
T  1454796 agagaaacacaaagcaaggt-gttaggagtagattctacccaagatttgttgagacatcatgagtctaggcatggaatcttcatctttctttcatccttt 1454894  T
Q  204 gcaaagttatcatagacat 222  Q
    || ||| |  |||||||||    
T  1454895 gccaagcttgcatagacat 1454913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 1466488 - 1466605
Alignment:
Q  105 agagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatccttt 203  Q
    |||||||||||| ||||||| ||||||||||||||| | ||||||||||||||||| |||||  |||   ||| ||||||||||||||  ||||||||||    
T  1466488 agagaaacacaaagcaaggt-gttaggagtagattctacccaagatttgttgagacatcatgagtctaggcatggaatcttcatctttctttcatccttt 1466586  T
Q  204 gcaaagttatcatagacat 222  Q
    || ||| |  |||||||||    
T  1466587 gccaagcttgcatagacat 1466605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 222
Target Start/End: Original strand, 15642402 - 15642534
Alignment:
Q  89 tagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcatg-aatcttcat 187  Q
    |||||| | |||||||||||||||||| || ||| | |||||||||||||||   ||||||||||||||||| ||||| |||| | |||| |||||||||    
T  15642402 tagggcttgtctagagagagaaacaca-tgaaagtt-gttaggagtagattcttaccaagatttgttgagacatcatgaatcttagcatgaaatcttcat 15642499  T
Q  188 cttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||||  |||||||||||| ||| |  |||||||||    
T  15642500 ctttctttcatcctttgctaagcttgcatagacat 15642534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 221
Target Start/End: Original strand, 32821815 - 32821918
Alignment:
Q  118 gcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatca-tgaatcttcatcttttcttcatcctttgcaaagttatcat 216  Q
    |||||||| |||||| ||||||||| |||||||||||||| |  ||||||||||   || ||||||||||||| |||| ||||||||  |||| ||||||    
T  32821815 gcaaggta-ttaggaatagattcaacccaagatttgttgataaatcatggatctatgcattgaatcttcatctcttctccatccttttaaaagctatcat 32821913  T
Q  217 agaca 221  Q
    |||||    
T  32821914 agaca 32821918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 13173973 - 13173860
Alignment:
Q  109 aaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcatg-aatcttcatct--tttcttcatcctttgc 205  Q
    |||||||| | ||||| ||||||||||||||| | ||||||||||||||||  |||||  ||    |||| |||||||||||  ||||||||||||||||    
T  13173973 aaacacaaagtaaggt-gttaggagtagattctacccaagatttgttgagatatcatgagtcgg--catggaatcttcatctcttttcttcatcctttgc 13173877  T
Q  206 aaagttatcatagacat 222  Q
    |||| ||||||||||||    
T  13173876 aaagctatcatagacat 13173860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 13182506 - 13182393
Alignment:
Q  109 aaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcatg-aatcttcatct--tttcttcatcctttgc 205  Q
    |||||||| | ||||| ||||||||||||||| | ||||||||||||||||  |||||  ||    |||| |||||||||||  ||||||||||||||||    
T  13182506 aaacacaaagtaaggt-gttaggagtagattctacccaagatttgttgagatatcatgagtcgg--catggaatcttcatctcttttcttcatcctttgc 13182410  T
Q  206 aaagttatcatagacat 222  Q
    |||| ||||||||||||    
T  13182409 aaagctatcatagacat 13182393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 6868244 - 6868179
Alignment:
Q  75 ttttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattc 140  Q
    |||||||||||| |||||||||||| |||| |||||||||||  |||||  ||||| |||||||||    
T  6868244 ttttagagagagattagggcatttcaagagtgagaaacacaaaacaagggtgttagaagtagattc 6868179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 14355035 - 14354983
Alignment:
Q  144 ccaagatttgttgagacgtcatggatctcatcatgaatcttcatcttttcttc 196  Q
    ||||||||||||||||| ||||| ||||  ||| |||||||||||||||||||    
T  14355035 ccaagatttgttgagacatcatgaatcttgtcacgaatcttcatcttttcttc 14354983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 9518565 - 9518488
Alignment:
Q  146 aagatttgttgagacgtcatggatctcatcatgaa-tcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||||||||||||||| ||||| || | | |||||| |||||||||||  |||||||||||| |||||  |||||||||    
T  9518565 aagatttgttgagacatcatgaattttagcatgaaatcttcatctttctttcatcctttgccaagtttgcatagacat 9518488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1494 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold1494
Description:

Target: scaffold1494; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 1465 - 1682
Alignment:
Q  7 cagcccatataaatagtttttccttctctctc--tagatttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctaga 103  Q
    ||||||||||||||||||||  ||||||| ||  ||||| |  |||||||||||||||||||||| |||  |||||||||||   |||||| ||||||||    
T  1465 cagcccatataaatagttttctcttctctttccatagatata-attacatttttattcatatttttctgg-ttttagagagaaactagggcttttctaga 1562  T
Q  104 gagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctt 202  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||| | |||||||||||||    
T  1563 gagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttatcatggaatcttcaccctttcttcatcctt 1662  T
Q  203 tgcaaagttatcatagacat 222  Q
    ||||||| ||||||||||||    
T  1663 tgcaaagctatcatagacat 1682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 44 - 222
Target Start/End: Complemental strand, 29123 - 28943
Alignment:
Q  44 ttctattacatttttattcatattttctgcatttt-agagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaa 142  Q
    |||||||||||||||||| ||||||||||  |||| ||||||||  |||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  29123 ttctattacatttttattgatattttctggttttttagagagagactagggcttttctagagagagaaacacaaagcaaggtagttaggagtagattcaa 29024  T
Q  143 gccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    |||||||||||||||||| ||||||||||  |||| ||||||||| | |||||||||||||||||||| ||||||||||||    
T  29023 gccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcctttgcaaagctatcatagacat 28943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 29223612 - 29223833
Alignment:
Q  9 gcccatataaatagtttttccttctctctctagat-------ttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttct 100  Q
    |||||| |||||||||||||||||||| ||||||        || ||||||||||||||||||||||| |||  ||||||||||||  |||||| |||||    
T  29223612 gcccatttaaatagtttttccttctctttctagaacaatatattgtattacatttttattcatatttttctgg-ttttagagagagactagggcttttct 29223710  T
Q  101 agagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatc 199  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||| | ||||||||||    
T  29223711 agagagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatc 29223810  T
Q  200 ctttgcaaagttatcatagacat 222  Q
    |||||||||| ||||||||||||    
T  29223811 ctttgcaaagctatcatagacat 29223833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 29336911 - 29337132
Alignment:
Q  9 gcccatataaatagtttttccttctctctctagat-------ttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttct 100  Q
    |||||| |||||||||||||||||||| ||||||        || ||||||||||||||||||||||| |||  ||||||||||||  |||||| |||||    
T  29336911 gcccatttaaatagtttttccttctctttctagaacaatatattgtattacatttttattcatatttttctgg-ttttagagagagactagggcttttct 29337009  T
Q  101 agagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatc 199  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||| | ||||||||||    
T  29337010 agagagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatc 29337109  T
Q  200 ctttgcaaagttatcatagacat 222  Q
    |||||||||| ||||||||||||    
T  29337110 ctttgcaaagctatcatagacat 29337132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 75 - 222
Target Start/End: Complemental strand, 42702399 - 42702250
Alignment:
Q  75 ttttagagagaggttagggcattt-ctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctca 173  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||      
T  42702399 ttttagagagaggttagggcattttctagagagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttg 42702300  T
Q  174 tcat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    |||| ||||||||||||||||||| |||||||||||| ||||||||||||    
T  42702299 tcatggaatcttcatcttttcttcctcctttgcaaagctatcatagacat 42702250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 44 - 222
Target Start/End: Complemental strand, 5784748 - 5784568
Alignment:
Q  44 ttctattacatttttattcatattttctgcatttt-agagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaa 142  Q
    |||||||||||||||||| ||||||||||  |||| ||||||||  |||||| ||||||||||||||||||||| |||||| ||||||||||||||||||    
T  5784748 ttctattacatttttattgatattttctggttttttagagagagactagggcttttctagagagagaaacacaaagcaaggaagttaggagtagattcaa 5784649  T
Q  143 gccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    |||||||||||||||||| ||||||||||  |||| ||||||||| | |||||||||||||||||||| ||||||||||||    
T  5784648 gccaagatttgttgagacatcatggatcttgtcatggaatcttcaccctttcttcatcctttgcaaagctatcatagacat 5784568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 28458079 - 28457921
Alignment:
Q  65 attttctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtca 164  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||| |||| |||    
T  28458079 attttctggtttttagagagaggttagggcatttctagagagagaaacacaaagcaaggtagttaggagtagattcaactcaagatttgttaagacatca 28457980  T
Q  165 tggatctcatca-tgaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    |||||||   || ||||||||||||||||||||||||||||||| | ||||||||||||    
T  28457979 tggatctaggcattgaatcttcatcttttcttcatcctttgcaatgctatcatagacat 28457921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 66 - 222
Target Start/End: Complemental strand, 36040463 - 36040306
Alignment:
Q  66 ttttctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcat 165  Q
    |||||||  ||||||||||||  || ||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36040463 ttttctggtttttagagagagactatggcttttgtagagagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcat 36040364  T
Q  166 ggatctcatcat-gaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||||||  |||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  36040363 ggatcttgtcatggaatcttcatcttttcttcatcctttgcaaagctatcatagacat 36040306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 66 - 222
Target Start/End: Complemental strand, 36668071 - 36667913
Alignment:
Q  66 ttttctgcattttagagagaggttagggcatttct-agagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtca 164  Q
    |||||||  ||||||| |||||||||||||||| | |||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| |||    
T  36668071 ttttctgatttttagacagaggttagggcattttttagagagagaaacacaaagcaaggtagttaggagtagacttaagccaagatttgttgagacatca 36667972  T
Q  165 tggatctcatca-tgaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    |||||||  ||| ||||||||||||| ||||||||||||||||||| ||||||||||||    
T  36667971 tggatcttgtcattgaatcttcatctcttcttcatcctttgcaaagctatcatagacat 36667913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 91 - 222
Target Start/End: Complemental strand, 23925207 - 23925075
Alignment:
Q  91 gggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatct 189  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||   |||| ||||||||||||    
T  23925207 gggcttttctagagagagaaacacaaagcaaggtagttaggagtagattcaagcgaagatttgttgagacatcatggatcatgtcatggaatcttcatct 23925108  T
Q  190 tttcttcatcctttgcaaagttatcatagacat 222  Q
    |||||||||||||||||||| ||||||||||||    
T  23925107 tttcttcatcctttgcaaagctatcatagacat 23925075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 13230598 - 13230385
Alignment:
Q  9 gcccatataaatagtttttccttctctctctagatttctattacatttttattcatatttt-ctgcattttagagagaggttagggcatttctagagaga 107  Q
    ||||||||||||||||||  ||||||| || |   ||| |||||| ||||||| | ||||| |||  ||||||||||||| |||||| ||||||||||||    
T  13230598 gcccatataaatagttttctcttctctttccaccattccattacagttttatttacatttttctggtttttagagagaggctagggcttttctagagaga 13230499  T
Q  108 gaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcctttgca 206  Q
      ||||||| |||||||||||| |||||||||||| ||||||||  ||||||| ||||| ||||  |||| |||||||||||||||||||||||||| ||    
T  13230498 --aacacaaagcaaggtagttatgagtagattcaacccaagattcattgagacatcatgaatcttgtcatggaatcttcatcttttcttcatcctttaca 13230401  T
Q  207 aagttatcatagacat 222  Q
    ||| ||||||||||||    
T  13230400 aagctatcatagacat 13230385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 75 - 222
Target Start/End: Original strand, 32522899 - 32523047
Alignment:
Q  75 ttttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcat 174  Q
    ||||| ||||||  |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||  |    
T  32522899 ttttacagagagactagggcttttctagagagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttattgagacatcatggatcttgt 32522998  T
Q  175 ca-tgaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    || ||||||||||| | |||||| |||||||||||| |||||| |||||    
T  32522999 cattgaatcttcatttcttcttcgtcctttgcaaagctatcatggacat 32523047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 36557693 - 36557566
Alignment:
Q  96 tttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatca-tgaatcttcatcttttct 194  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||   || | ||||||||||||||||    
T  36557693 tttctagagagagaaacacatagcaaggtagttaggagtagattcaacccaagatttgttgagacatcatggatctaggcatttaatcttcatcttttct 36557594  T
Q  195 tcatcctttgcaaagttatcatagacat 222  Q
    ||||||||||||||| ||||||||||||    
T  36557593 tcatcctttgcaaagctatcatagacat 36557566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 66 - 222
Target Start/End: Original strand, 43991492 - 43991643
Alignment:
Q  66 ttttctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcat 165  Q
    |||||||  ||||||||||||  |  ||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43991492 ttttctggtttttagagagagactgtggcttttctagagatagaaacacaaggcaaggtagttaggagtagattcaagccaagatttgttgagacatcat 43991591  T
Q  166 ggatctcatcatgaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||||||  ||||| |     |||||||||||||||||||||||| ||||||||||||    
T  43991592 ggatcttgtcatgga-----atcttttcttcatcctttgcaaagctatcatagacat 43991643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 8687864 - 8687769
Alignment:
Q  75 ttttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatct 171  Q
    |||||||||||||||||||||||| |  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8687864 ttttagagagaggttagggcattt-tctagagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatct 8687769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 55 - 222
Target Start/End: Original strand, 14700590 - 14700759
Alignment:
Q  55 ttttattcatattttctgcatt-ttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttg 153  Q
    |||||||||| ||||||||||  ||||||||||  |||||| ||| |||||||| |||||||| |||||||||||| |||||||||||| ||||||||||    
T  14700590 ttttattcattttttctgcatacttagagagagactagggcttttatagagagaaaaacacaaagcaaggtagttaagagtagattcaacccaagatttg 14700689  T
Q  154 ttgagacgtcatggatctcatc-atgaatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||||||| || ||  |||   | | ||| |||||| ||||||||||||||||||||| ||||||||||||    
T  14700690 ttgagacatcttgagtctaggcaaggaaacttcatattttcttcatcctttgcaaagctatcatagacat 14700759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 96 - 222
Target Start/End: Original strand, 27257376 - 27257503
Alignment:
Q  96 tttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcatg-aatcttcatcttttct 194  Q
    |||||||||||||||||||||  |||||||||| |||| ||||| || ||||||||  ||||||| ||||| ||||   |||| ||||||||||||||||    
T  27257376 tttctagagagagaaacacaaaacaaggtagtttggaggagatttaacccaagattcattgagacatcatgaatctaggcatggaatcttcatcttttct 27257475  T
Q  195 tcatcctttgcaaagttatcatagacat 222  Q
    ||||||||||||||| ||||||||||||    
T  27257476 tcatcctttgcaaagctatcatagacat 27257503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 222
Target Start/End: Complemental strand, 24663309 - 24663175
Alignment:
Q  89 tagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatca-tgaatcttcat 187  Q
    |||||| ||||||||||||||||||||| ||||||| ||||||||||| ||||  ||||||||||||||||| ||||| |||| | || |||||||||||    
T  24663309 tagggcttttctagagagagaaacacaaagcaaggttgttaggagtagtttcataccaagatttgttgagacatcatgaatcttagcattgaatcttcat 24663210  T
Q  188 cttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||||  |||||||||||| ||| |  |||||||||    
T  24663209 ctttctttcatcctttgcgaagcttgcatagacat 24663175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 196
Target Start/End: Original strand, 31758259 - 31758365
Alignment:
Q  90 agggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcatgaatcttcatct 189  Q
    ||||||||||||||||||||||||  | |||||   ||||| ||| |||||   ||||||||||||||||| ||||| ||||  ||||||||||||||||    
T  31758259 agggcatttctagagagagaaacatgaagcaagagtgttagaagtggattctttccaagatttgttgagacatcatgaatcttgtcatgaatcttcatct 31758358  T
Q  190 tttcttc 196  Q
    |||||||    
T  31758359 tttcttc 31758365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 222
Target Start/End: Complemental strand, 9787282 - 9787150
Alignment:
Q  93 gcatttctagagagagaaaca---caatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcatgaa-tcttcatc 188  Q
    ||||||||||||||||| |||   ||| ||||| | |||||||||||||||    |||||||||||||||  ||||| ||||   |||||| |||||||     
T  9787282 gcatttctagagagagacacaaagcaaagcaagat-gttaggagtagattcttatcaagatttgttgagatatcatgaatctaggcatgaaatcttcata 9787184  T
Q  189 ttttcttcatcctttgcaaagttatcatagacat 222  Q
    ||||||||||||||||||||| ||||||||||||    
T  9787183 ttttcttcatcctttgcaaagctatcatagacat 9787150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 21159986 - 21160083
Alignment:
Q  126 gttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcatgaa-tcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    |||||||||||||||    |||||||||||||||| ||||| ||||   |||||| ||||||||| ||||||||| ||||||||| ||||||||||||    
T  21159986 gttaggagtagattcttatcaagatttgttgagacatcatgaatctaggcatgaaatcttcatctcttcttcatcttttgcaaagctatcatagacat 21160083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 492737 - 492799
Alignment:
Q  103 agagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatg 166  Q
    ||||||||||||||  |||||| ||||||||||||||| | ||||||||||||||||| |||||    
T  492737 agagagaaacacaaatcaaggt-gttaggagtagattctacccaagatttgttgagacatcatg 492799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 159
Target Start/End: Original strand, 11651776 - 11651870
Alignment:
Q  65 attttctgcattttagagagaggttagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgaga 159  Q
    ||||||||  ||||||||||||  || | ||||| ||||||||||||||||| ||||||  |||| ||||||||||   ||||||||||| ||||    
T  11651776 attttctggtttttagagagagagtatgacatttatagagagagaaacacaaagcaagggtgttatgagtagattcttcccaagatttgtagaga 11651870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 81 - 222
Target Start/End: Complemental strand, 116754 - 116611
Alignment:
Q  81 agagaggttagggcattt-ctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-g 178  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| |    
T  116754 agagaggttagggcattttctagagagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatgg 116655  T
Q  179 aatcttcatcttttcttcatcctttgcaaagttatcatagacat 222  Q
    |||| |||||||||||||||||||||||||| ||||||||||||    
T  116654 aatcctcatcttttcttcatcctttgcaaagctatcatagacat 116611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 98 - 222
Target Start/End: Complemental strand, 76620 - 76495
Alignment:
Q  98 tctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttc 196  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||| |  ||||||    
T  76620 tctagagagagaaacacaaagcaaggtagttaggagtagattcaagccaagatttgttgagacatcatggatcttgtcatagaatcttcaacaattcttc 76521  T
Q  197 atcctttgcaaagttatcatagacat 222  Q
    ||||||||||||| ||||||||||||    
T  76520 atcctttgcaaagctatcatagacat 76495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1832 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold1832
Description:

Target: scaffold1832; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 90 - 222
Target Start/End: Complemental strand, 147 - 14
Alignment:
Q  90 agggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatca-tgaatcttcatc 188  Q
    |||||||||||||||||||||| |||| ||||||||||| |||||||||||||  |||||||||||||||| ||||||||||   || ||||||||| ||    
T  147 agggcatttctagagagagaaagacaaagcaaggtagttgggagtagattcaacacaagatttgttgagacatcatggatctaggcattgaatcttcctc 48  T
Q  189 ttttcttcatcctttgcaaagttatcatagacat 222  Q
    | ||||||||||||||||||| ||||||||||||    
T  47 tcttcttcatcctttgcaaagctatcatagacat 14  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 89 - 222
Target Start/End: Complemental strand, 16651 - 16517
Alignment:
Q  89 tagggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcatg-aatcttcat 187  Q
    |||||| ||||||||||||||||||||| | |||||||||| |||||||||| | ||||||||||||||||| ||||| ||||   |||| |||||||||    
T  16651 tagggcttttctagagagagaaacacaaagtaaggtagttaagagtagattctacccaagatttgttgagacatcatgaatctaggcatgaaatcttcat 16552  T
Q  188 cttttcttcatcctttgcaaagttatcatagacat 222  Q
    |||||||||||||||||| ||| |||| |||||||    
T  16551 cttttcttcatcctttgccaagctatcttagacat 16517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0298 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0298
Description:

Target: scaffold0298; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 105 - 222
Target Start/End: Complemental strand, 12363 - 12246
Alignment:
Q  105 agagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatccttt 203  Q
    |||||||||||| ||||||| ||||||||||||||||| ||||||||| ||||||| ||||| ||||   ||| |||||||||||| |||||||||||||    
T  12363 agagaaacacaaagcaaggt-gttaggagtagattcaacccaagatttattgagacatcatgaatctaggcattgaatcttcatctcttcttcatccttt 12265  T
Q  204 gcaaagttatcatagacat 222  Q
    |||||| ||||||||||||    
T  12264 gcaaagctatcatagacat 12246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0298; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 105 - 222
Target Start/End: Complemental strand, 16133 - 16016
Alignment:
Q  105 agagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatccttt 203  Q
    |||||||||||| ||||||| ||||||||||||||||| ||||||||| ||||||| ||||| ||||   ||| |||||||||||| |||||||||||||    
T  16133 agagaaacacaaagcaaggt-gttaggagtagattcaacccaagatttattgagacatcatgaatctaggcattgaatcttcatctcttcttcatccttt 16035  T
Q  204 gcaaagttatcatagacat 222  Q
    |||||| ||||||||||||    
T  16034 gcaaagctatcatagacat 16016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 12195 - 12312
Alignment:
Q  105 agagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatccttt 203  Q
    |||||||||||| ||||||| ||||||||||||||||| ||||||||| ||||||| ||||| ||||   ||| |||||||||||| |||||||||||||    
T  12195 agagaaacacaaagcaaggt-gttaggagtagattcaacccaagatttattgagacatcatgaatctaggcattgaatcttcatctcttcttcatccttt 12293  T
Q  204 gcaaagttatcatagacat 222  Q
    |||||| ||||||||||||    
T  12294 gcaaagctatcatagacat 12312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 103 - 222
Target Start/End: Complemental strand, 1147 - 1028
Alignment:
Q  103 agagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatcttttcttcatcct 201  Q
    |||||||||||||| | ||||| ||||||||||||||| | ||||||||||||||||| |||||  |||   ||| |||| ||||| | |||||| ||||    
T  1147 agagagaaacacaaagtaaggt-gttaggagtagattctatccaagatttgttgagacatcatgagtctaggcatggaattttcatatcttcttcgtcct 1049  T
Q  202 ttgcaaagttatcatagacat 222  Q
    |||||||||||||| ||||||    
T  1048 ttgcaaagttatcacagacat 1028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 90 - 222
Target Start/End: Original strand, 14174 - 14302
Alignment:
Q  90 agggcatttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcat-gaatcttcatc 188  Q
    ||||||||||||||||||    ||||| ||||||| |||||||||||||||||  |||||||||||||||| |||||  | |    || |||||||||||    
T  14174 agggcatttctagagaga----cacaaagcaaggt-gttaggagtagattcaactcaagatttgttgagacatcatgagtttagggatggaatcttcatc 14268  T
Q  189 ttttcttcatcctttgcaaagttatcatagacat 222  Q
    |||| |||||||||||||||| ||||||| ||||    
T  14269 tttttttcatcctttgcaaagctatcatatacat 14302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 35443 - 35390
Alignment:
Q  106 gagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagac 160  Q
    ||||||||||| ||||||| ||||||||||||||| | |||||||||||||||||    
T  35443 gagaaacacaaagcaaggt-gttaggagtagattctacccaagatttgttgagac 35390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0458 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 222
Target Start/End: Complemental strand, 9626 - 9497
Alignment:
Q  94 catttctagagagagaaacacaatgcaaggtagttaggagtagattcaagccaagatttgttgagacgtcatggatctcatcatg-aatcttcatctttt 192  Q
    ||||||||| |||||||||||||  ||||   ||||| |||||||||   | | ||||||| ||||  ||||| |||| |  ||| |||||||||||||     
T  9626 catttctagtgagagaaacacaaatcaagcatgttagaagtagattcttcctaggatttgtagagatatcatgaatcttagtatggaatcttcatctttc 9527  T
Q  193 cttcatcctttgcaaagttatcatagacat 222  Q
     | |||| ||||||||||||||||||||||    
T  9526 ttccatcttttgcaaagttatcatagacat 9497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University