View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15514_low_38 (Length: 233)
Name: NF15514_low_38
Description: NF15514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15514_low_38 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 2795174 - 2794976
Alignment:
| Q |
17 |
cataggcgcaacataaacaattttataagcactatggtcaattgaaccatcaccaggatttctatgccgtgcaatctcttgaagtatggtaagaacagca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2795174 |
cataggcgcaacataaacaattttataagcactatggtcaattgaaccatcaccaggatttctatgccgtgcaatctcttgaagtatggtaagaacagca |
2795075 |
T |
|
| Q |
117 |
acattggtttttccagcaccagttgtagcacaaagtaaaagattatccgatttaaacagagcagtctcgtataccttgctctgcactctattcaattgt |
215 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2795074 |
acattggtttttccagcaccagttggagcacaaagtaaaagattatccgatttaaacagagcagtctcatataccttgctctgcactctattcaattgt |
2794976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 211
Target Start/End: Complemental strand, 29262680 - 29262493
Alignment:
| Q |
24 |
gcaacataaacaattttataagcactatggtcaattgaaccatcaccaggatttctatgccgtgcaatctcttgaagtatggtaagaacagcaacattgg |
123 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||||| ||||||||| | | ||| |||||||| ||||||| |||||| || ||||||||||||||||| | |
|
|
| T |
29262680 |
gcaacatatacaattttatatgcactgtggtcaatagaaccatcatcggtattcctatgccgcgcaatctgttgaaggatagtaagaacagcaacattcg |
29262581 |
T |
|
| Q |
124 |
tttttccagcaccagttgtagcacaaagtaaaagattatccgatttaaacagagcagtctcgtataccttgctctgcactctattcaa |
211 |
Q |
| |
|
||||||||||||| || | |||||||| || | |||||| | ||| || |||||||| || || ||||||||||| ||||||||||| |
|
|
| T |
29262580 |
tttttccagcaccggtaggggcacaaagcaacaaattatcaggtttgaagagagcagtttcataaaccttgctctgaactctattcaa |
29262493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University