View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15514_low_40 (Length: 228)
Name: NF15514_low_40
Description: NF15514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15514_low_40 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 31274818 - 31274667
Alignment:
| Q |
75 |
aactaacccaaataaaaccataaataatacataaactttaatttcatttagtannnnnnnnnnnnnnatattgttattttagccacaacaaaaagttagt |
174 |
Q |
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| T |
31274818 |
aactaacccaaattaaaccataaataatacatgaactttaatttcatttagtatttttttttttt--atgttgttattttagccacaacaaaaagttagt |
31274721 |
T |
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| Q |
175 |
ttaggatcccccagataaaggtcccttattctctttgacctatgttcaactcat |
228 |
Q |
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| T |
31274720 |
ttaggatcccccggatgaaggtcccttattctctttgacctatgttcaactcat |
31274667 |
T |
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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 42937447 - 42937397
Alignment:
| Q |
42 |
ttgttagagttaaaaatggatttgagctaataaaactaacccaaataaaac |
92 |
Q |
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| T |
42937447 |
ttgttagagttacaaatggatttgaattaataaaactagcccaaacaaaac |
42937397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 47377594 - 47377665
Alignment:
| Q |
21 |
ttattttgttcaaataagcaattgttagagttaaaaatggatttgagctaataaaactaacccaaataaaac |
92 |
Q |
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| T |
47377594 |
ttattttgttcaaattaacgattgttagggttataaatagacatgagctaataaaacttgcccaaataaaac |
47377665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 3162206 - 3162259
Alignment:
| Q |
23 |
attttgttcaaataagcaattgtta-gagttaaaaatggatttgagctaataaa |
75 |
Q |
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| T |
3162206 |
attttgttcgaattagcaattgttaagagttaaaaatagatttgggctaataaa |
3162259 |
T |
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