View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15514_low_6 (Length: 562)
Name: NF15514_low_6
Description: NF15514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15514_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 1 - 548
Target Start/End: Complemental strand, 21613709 - 21613162
Alignment:
| Q |
1 |
ttaaccgttcgagtcgaagaaggaattaccatagtcggtcgtggatccaacgcccatgtcaaaagctcctcaccgcaaaaatcacctgggccaatacgac |
100 |
Q |
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| T |
21613709 |
ttaaccgttcgagtcgaagaaggaattaccatagtcggtcgtggatccaacgcccatgtcaaaagctcctcgccacaaaaatcacctgggccaatacgac |
21613610 |
T |
|
| Q |
101 |
atgagttgaagaaaccagtgcggcctccatccgttgtgtaggaatcaagatttcctcttattatgaatagcatctcgttcacaggatcgccttcacgaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21613609 |
atgagttgaagaaaccagtgcggcctccatccgttgtgtaggaatcaagatttcctcttattatgaatagcatctcgttcacaggatcgccttcacgaac |
21613510 |
T |
|
| Q |
201 |
tagataagtattctcggtgcatagtgcaggctttagtctttcgcatattgcgtctagcatcctctcatccattgcatcaaacagtggaacctgttcatga |
300 |
Q |
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| T |
21613509 |
tagataagtattctcggtgcatagtgcaggctttagtctttcgcatattgcgtctagcatcctctcatccattgcatcaaacagtggaacctgttcatga |
21613410 |
T |
|
| Q |
301 |
taaatcatttacataatcttaaacagcacattatatgagatggagggagtaattgagaaggaaagtttaatgattaattgactcactcttcgaactagtt |
400 |
Q |
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| T |
21613409 |
taaatcatttacataatcttaaacagcacataatatgagacggagggagtgattgagaaggaaagtttaacgattaattgactcactcttcgaactagtt |
21613310 |
T |
|
| Q |
401 |
caagacaaagatggcgtttaatgtctcttcgaagatccaatggaagtcctctgagaagagattcttcatctacacctcgtgtagctatccatttatattg |
500 |
Q |
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| T |
21613309 |
caagacaaaggtggcgtttaatgtctcttcgaagatccaatggaagtcctctgagaagagattcttcatctacgcctcgtgtagctatccatttatattg |
21613210 |
T |
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| Q |
501 |
atcgtacttacgcacggattgtcttagttcttgaggtagttgtctgtg |
548 |
Q |
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| T |
21613209 |
atcgtacttacgcacggattgtcttagttcttgaggtagttgtctgtg |
21613162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 37 - 295
Target Start/End: Original strand, 40510651 - 40510909
Alignment:
| Q |
37 |
ggtcgtggatccaacgcccatgtcaaaagctcctcaccgcaaaaatcacctgggccaatacgacatgagttgaagaaaccagtgcggcctccatccgttg |
136 |
Q |
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| T |
40510651 |
ggtcttggatctaaggcccatgttaagagctcttcaccacagaaatcgcctggaccgattctacatgagttgaagaatccgtcacggcctccatttgttg |
40510750 |
T |
|
| Q |
137 |
tgtaggaatcaagatttcctcttattatgaatagcatctcgttcacaggatcgccttcacgaactagataagtattctcggtgcatagtgcaggctttag |
236 |
Q |
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| T |
40510751 |
tgtaagaatcaagatggcctctaattatgaagagcatttcgttcactggatcgccttcgcggacaagataagttccctcggtgcataatgcaggctttag |
40510850 |
T |
|
| Q |
237 |
tctttcgcatattgcgtctagcatcctctcatccattgcatcaaacagtggaacctgtt |
295 |
Q |
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| T |
40510851 |
tctttcgcatattgcgtctagcattctttcatccatttgatcaaacaagggaacctgtt |
40510909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 379 - 548
Target Start/End: Original strand, 40511173 - 40511342
Alignment:
| Q |
379 |
tgactcactcttcgaactagttcaagacaaagatggcgtttaatgtctcttcgaagatccaatggaagtcctctgagaagagattcttcatctacacctc |
478 |
Q |
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||||| |||| ||||||||||||||||||||| |||||||| || ||||| | |||||||| ||||||||| |||| ||| |||||| ||||| |||| |
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| T |
40511173 |
tgacttactcctcgaactagttcaagacaaaggtggcgtttgatttctctcctaagatccagcggaagtcctttgagcagatcttcttcttctactcctc |
40511272 |
T |
|
| Q |
479 |
gtgtagctatccatttatattgatcgtacttacgcacggattgtcttagttcttgaggtagttgtctgtg |
548 |
Q |
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||||||| | |||||||||||||| || ||||| | || | |||||||||| |||| ||||| ||||| |
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| T |
40511273 |
gtgtagccacccatttatattgattatatttacgaatagactctcttagttctggagggagttgcctgtg |
40511342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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