View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15514_low_8 (Length: 495)
Name: NF15514_low_8
Description: NF15514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15514_low_8 |
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| [»] scaffold0363 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: scaffold0363 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 304 - 495
Target Start/End: Complemental strand, 15913 - 15722
Alignment:
| Q |
304 |
gaccatgtgactgttggagaaaaaatcattgaagggtccacacgctttcacaagagtctctctctacttcattttttatgaactaatgaaccagaaagaa |
403 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15913 |
gaccatgtgactattggagaaaaaatcattgaagggtccacacgctttcacaagagtctctctctacttcattttttatgaactaatgaaccagaaagaa |
15814 |
T |
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| Q |
404 |
ataacacatacatacatcataatacataattatggcttcttcttcctttcatggcgcatctcagaaaaaatatgatgttttcatcagctttc |
495 |
Q |
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| T |
15813 |
ataacacatacatacatcataatacataattatggctttttcttcctctcatggcgcatctcagaaaaaatatgatgttttcatcagctttc |
15722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 16146 - 15915
Alignment:
| Q |
1 |
ggtaaatttcaagcgagaacaatagttaactgccatcgagaagcgaggatgatagttagtagtaactaagatcaaatgcgtaattttcaagtgttttata |
100 |
Q |
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| T |
16146 |
ggtaaattttaagcgtgaacgatagttaactgccgtcgagaagcgacaacgatagttagcggtaattaagatcaaatgcgtaaatttcacttggtttata |
16047 |
T |
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| Q |
101 |
agaattttt-gaagtgggtacaacaatttttcgaacttcaaacccttctagatgggtacaattatcccattttttccctcatataaataaattgcctact |
199 |
Q |
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| T |
16046 |
acaattttttgaagtgggtacaacaatttttcgaactttaaacccttctagatgggtacaatcatcccattttttcccttatattaataaattgcctact |
15947 |
T |
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| Q |
200 |
tgcttgcttcaacaacctcactagtcaagtag |
231 |
Q |
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| T |
15946 |
tgcttgcttcaacaacctcactagtcaagtag |
15915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 304 - 495
Target Start/End: Original strand, 14402940 - 14403131
Alignment:
| Q |
304 |
gaccatgtgactgttggagaaaaaatcattgaagggtccacacgctttcacaagagtctctctctacttcattttttatgaactaatgaaccagaaagaa |
403 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14402940 |
gaccatgtgactattggagaaaaaatcattgaagggtccacacgctttcacaagagtctctctctacttcattttttatgaactaatgaaccagaaagaa |
14403039 |
T |
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| Q |
404 |
ataacacatacatacatcataatacataattatggcttcttcttcctttcatggcgcatctcagaaaaaatatgatgttttcatcagctttc |
495 |
Q |
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| T |
14403040 |
ataacacatacatacatcataatacataattatggctttttcttcctctcatggcgcatctcagaaaaaatatgatgttttcatcagctttc |
14403131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 14402707 - 14402938
Alignment:
| Q |
1 |
ggtaaatttcaagcgagaacaatagttaactgccatcgagaagcgaggatgatagttagtagtaactaagatcaaatgcgtaattttcaagtgttttata |
100 |
Q |
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||||||||| ||||| |||| ||||||||||||| ||||||||||| | ||||||||| |||| ||||||||||||||||| ||||| || |||||| |
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| T |
14402707 |
ggtaaattttaagcgtgaacgatagttaactgccgtcgagaagcgacaacgatagttagcggtaattaagatcaaatgcgtaaatttcacttggtttata |
14402806 |
T |
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| Q |
101 |
agaatttt-tgaagtgggtacaacaatttttcgaacttcaaacccttctagatgggtacaattatcccattttttccctcatataaataaattgcctact |
199 |
Q |
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| T |
14402807 |
acaattttttgaagtgggtacaacaatttttcgaactttaaacccttctagatgggtacaatcatcccattttttcccttatattaataaattgcctact |
14402906 |
T |
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| Q |
200 |
tgcttgcttcaacaacctcactagtcaagtag |
231 |
Q |
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| T |
14402907 |
tgcttgcttcaacaacctcactagtcaagtag |
14402938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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