View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15515_high_1 (Length: 476)

Name: NF15515_high_1
Description: NF15515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15515_high_1
NF15515_high_1
[»] chr1 (8 HSPs)
chr1 (57-476)||(47917498-47917911)
chr1 (134-263)||(47924246-47924375)
chr1 (142-244)||(47909557-47909659)
chr1 (134-244)||(47903176-47903286)
chr1 (338-471)||(47923761-47923894)
chr1 (409-476)||(47898129-47898196)
chr1 (338-476)||(47902618-47902756)
chr1 (409-476)||(47909297-47909364)


Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 57 - 476
Target Start/End: Complemental strand, 47917911 - 47917498
Alignment:
Q  57 gtagttgcaagtaattactaactagttgttcaatgcgggacaaaaaatgcacaacatgttatttatctatctctcccttttgtacaggaggagttcaata 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47917911 gtagttgcaagtaattactaactagttgttcaatgcgggacaaaaaatgcacaacatgttatttatctatctctcccttttgtacaggaggagttcaata 47917812  T
Q  157 caggtattgtgcattggctcagtatgcaaatctcgtgggtgttaccattggcttcactctcacaggatccattagcatggtgtaagaatttaataaatct 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47917811 caggtattgtgcattggctcagtatgcaaatctcgtgggtgttaccattggcttcactctcacaggatccattagcatggtgtaagaatttaataaatct 47917712  T
Q  257 ctcactatatcattagctgatttataaacctatgaaaataataatagtaatgataatacttgcttgnnnnnnnaatataatagggccatacaaaaatgca 356  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||         | |||||||||||||||||||||||    
T  47917711 ctcactatatcattagctgatttataaacctatgaaaataatagtagcaatgacaatacttgcttgttt------tttaatagggccatacaaaaatgca 47917618  T
Q  357 attgctttcataagtatggtcatgaagcagactgcagtacaacaaactatcaatttatggccatctttggaatctttgagattttactaagtcaaatccc 456  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  47917617 attgctttcataagtatggtcatgaagctgactgcagtacaacaaactatcaatttatggccatctttggaatctttgagattttactaagtcaaattcc 47917518  T
Q  457 caacttccatgaactttcat 476  Q
    ||||||||||||||||||||    
T  47917517 caacttccatgaactttcat 47917498  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 134 - 263
Target Start/End: Complemental strand, 47924375 - 47924246
Alignment:
Q  134 ttttgtacaggaggagttcaatacaggtattgtgcattggctcagtatgcaaatctcgtgggtgttaccattggcttcactctcacaggatccattagca 233  Q
    |||| ||||||||| |||||||||| || ||||| ||||||||| ||| |||||||  | ||| |||||||||| | |||||||||||||||||||||||    
T  47924375 ttttctacaggaggcgttcaatacaagttttgtggattggctcaatatacaaatcttatcggtattaccattggttacactctcacaggatccattagca 47924276  T
Q  234 tggtgtaagaatttaataaatctctcacta 263  Q
    |||||||||||  |||| ||||||| ||||    
T  47924275 tggtgtaagaacctaatcaatctctaacta 47924246  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 142 - 244
Target Start/End: Complemental strand, 47909659 - 47909557
Alignment:
Q  142 aggaggagttcaatacaggtattgtgcattggctcagtatgcaaatctcgtgggtgttaccattggcttcactctcacaggatccattagcatggtgtaa 241  Q
    ||||||||||||||||| ||  ||||  |||||||||||  ||||||| ||||||  ||||||||| | |||||||||||||||||||||||||||||||    
T  47909659 aggaggagttcaatacaagttgtgtgggttggctcagtacacaaatcttgtgggttgtaccattggttacactctcacaggatccattagcatggtgtaa 47909560  T
Q  242 gaa 244  Q
    |||    
T  47909559 gaa 47909557  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 134 - 244
Target Start/End: Complemental strand, 47903286 - 47903176
Alignment:
Q  134 ttttgtacaggaggagttcaatacaggtattgtgcattggctcagtatgcaaatctcgtgggtgttaccattggcttcactctcacaggatccattagca 233  Q
    |||| |||||||||  ||||||||| || ||||| ||||||||||||  ||||||| ||||||  ||||||||| | |||  |||||||||||||||| |    
T  47903286 ttttctacaggaggtattcaatacaagttttgtggattggctcagtacacaaatcttgtgggttgtaccattggttacaccatcacaggatccattagta 47903187  T
Q  234 tggtgtaagaa 244  Q
    |||||||||||    
T  47903186 tggtgtaagaa 47903176  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 338 - 471
Target Start/End: Complemental strand, 47923894 - 47923761
Alignment:
Q  338 agggccatacaaaaatgcaattgctttcataagtatggtcatgaagcagactgcagtacaacaaactatcaatttatggccatctttggaatctttgaga 437  Q
    ||||| ||| |||||| ||| |||||||||||||||||||||||||| || ||||  | | | || |||||||||||||||||||||||  |    ||||    
T  47923894 agggcaataaaaaaatccaactgctttcataagtatggtcatgaagcggattgcaaaatatccaattatcaatttatggccatctttggggttacagaga 47923795  T
Q  438 ttttactaagtcaaatccccaacttccatgaact 471  Q
    |||||||||| ||||||||  | |||||||||||    
T  47923794 ttttactaagccaaatcccagatttccatgaact 47923761  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 409 - 476
Target Start/End: Complemental strand, 47898196 - 47898129
Alignment:
Q  409 atttatggccatctttggaatctttgagattttactaagtcaaatccccaacttccatgaactttcat 476  Q
    |||||||||||||||||||| |||| ||||||||||||| ||||| ||  | ||||||||||||||||    
T  47898196 atttatggccatctttggaagctttcagattttactaagccaaattccatatttccatgaactttcat 47898129  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 338 - 476
Target Start/End: Complemental strand, 47902756 - 47902618
Alignment:
Q  338 agggccatacaaaaatgcaattgctttcataagtatggtcatgaagcagactgcagtacaacaaactatcaatttatggccatctttggaatctttgaga 437  Q
    ||||||||| ||||||  ||||||||||||||| | || |||   || |||||||  | | | |||||| |||||||||||||||| |||||  ||||||    
T  47902756 agggccataaaaaaatcgaattgctttcataaggaaggccatttggcggactgcaagatatccaactataaatttatggccatcttcggaattgttgaga 47902657  T
Q  438 ttttactaagtcaaatccccaacttccatgaactttcat 476  Q
    |||||||||| | ||| ||  | ||||||||||||||||    
T  47902656 ttttactaagcctaattccagatttccatgaactttcat 47902618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 476
Target Start/End: Complemental strand, 47909364 - 47909297
Alignment:
Q  409 atttatggccatctttggaatctttgagattttactaagtcaaatccccaacttccatgaactttcat 476  Q
    |||||||||||| ||||||| |||| |||||||||| || ||||| ||  | ||||||||||||||||    
T  47909364 atttatggccatttttggaagctttcagattttactgagccaaattccagatttccatgaactttcat 47909297  T

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