View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15515_high_2 (Length: 452)
Name: NF15515_high_2
Description: NF15515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15515_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 34 - 245
Target Start/End: Original strand, 28519478 - 28519688
Alignment:
| Q |
34 |
aaaagtattttttacagttcacgaagattttatttataacaactcttacaaaaagattttatttgtaccnnnnnnntttatttataacnnnnnnnngaag |
133 |
Q |
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| T |
28519478 |
aaaagtattttttacagttcacgaagattttatttataacaactcttaaaaaaagattttatttgtaccaaaaaattttatttataac-aaaaaaagaag |
28519576 |
T |
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| Q |
134 |
attcattttaattttcgcaattgtaagnnnnnnntatctatctcgtctgaaaaagaaataatttnnnnnnnntcaataagtgggtaacacccacacacga |
233 |
Q |
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| T |
28519577 |
ctttattttaattttcgcaattgtaagaaaaaaatatctatctcgtctgaaaaagaaataatttaaaaaaaatcaataagtgggtaacacccacacacga |
28519676 |
T |
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| Q |
234 |
atatttatggaa |
245 |
Q |
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|||||||||||| |
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| T |
28519677 |
atatttatggaa |
28519688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 274 - 349
Target Start/End: Original strand, 28519717 - 28519792
Alignment:
| Q |
274 |
tggaatatacttcatttttgtaaggtaacttgtttaagttattggtcatcaatttgtgttataagggtattatatt |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28519717 |
tggaatatacttcatttttgtaaggtaacttgtttaagttattggtcatcaatttgtgttataagggtattatatt |
28519792 |
T |
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