View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15515_high_3 (Length: 400)
Name: NF15515_high_3
Description: NF15515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15515_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 46522256 - 46522630
Alignment:
| Q |
18 |
agaatcaccgttaaacatgaaacaattatgaatattgttaatgcaccaaatttcattgaccccgtttaattcaaaatacttgctgcaacaatgggattat |
117 |
Q |
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| T |
46522256 |
agaatcaccgttaaacatgaaacaactatgagtattgtta-tgcaccaaatttcattgaccccgtttaattcaaaatacttgctacaacaatgggattat |
46522354 |
T |
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| Q |
118 |
atagtaacnnnnnnnnnnnnnnnng-----ggggattatgtatgttgtgtattattaggtacattattattaatgacccttgtggagagctatttgagcc |
212 |
Q |
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|| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46522355 |
atcgtaacaaaaaaaaaaaaggaaaaaaaaggggattatgtatgttgtgtattattagatacattattattaatgacccttgtggagagctatttgagcc |
46522454 |
T |
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| Q |
213 |
ggaaagatacatccagtatttagatttaaatggttggttacaagagaacaattgttctaaatacaacacacgcaactactaagaaccgggaaatagacat |
312 |
Q |
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|||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46522455 |
ggaaagatacatccagtatttagagttaaatggtt----acaggagaacaattgttctaaatacaacacacgcaactactaagaaccgggaaatagacat |
46522550 |
T |
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| Q |
313 |
agcagcaagattatttcatttgcagataagctcagaacttcttgatgaattcataaatgtgattacttatttcctatgct |
392 |
Q |
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| T |
46522551 |
agcagcaagattatttcatttgtagataagctcagaacttcttgatgaattcataaatgtgattacttatttcctctgct |
46522630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 46529692 - 46530063
Alignment:
| Q |
18 |
agaatcaccgttaaacatgaaacaattatgaatattgttaatgcaccaaatttcattgaccccgtttaattcaaaatacttgctgcaacaatgggattat |
117 |
Q |
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| T |
46529692 |
agaatcaccgttaaacacgtcactattatgagcattgttgatgcaccaaatttcattgaccccgtttaattcaaaatacttgctacaacaatgggattat |
46529791 |
T |
|
| Q |
118 |
atagtaacnnnnnnnnnnnnnnnngggggattatgtatgttgtgtattattaggtacattattattaatgacccttgtggagagctattt-gagccggaa |
216 |
Q |
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||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| || || ||| |
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| T |
46529792 |
gtagtaaccaaaaaaaaaaaaaaaacgggattatgtatgttgtgtattattaggtacgttattattagtgacccttgtggagagctattttgaaccagaa |
46529891 |
T |
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| Q |
217 |
agatacatccagtatttagatttaaatggttggttacaagagaacaattgttctaaatacaacacacgcaactactaagaaccgggaaatagacatagca |
316 |
Q |
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| T |
46529892 |
agatacatccagtatttagagttaaatggtt----acaggagaacaattgttctaaatacaacacacgcaactactaagaacccggaaatagacatagca |
46529987 |
T |
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| Q |
317 |
gcaagattatttcatttgcagataagctcagaacttcttgatgaattcataaatgtgattacttatttcctatgct |
392 |
Q |
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| T |
46529988 |
gcaagattatttcatttgtagataagctcagaacttcttgatgaattcataaatgtgattacttatttcctctgct |
46530063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 273 - 392
Target Start/End: Complemental strand, 46324478 - 46324359
Alignment:
| Q |
273 |
atacaacacacgcaactactaagaaccgggaaatagacatagcagcaagattatttcatttgcagataagctcagaacttcttgatgaattcataaatgt |
372 |
Q |
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|||||||||| |||||||||||||| || | ||||||| |||| ||| ||||||||| ||| | |||||||||||||||||||||||||||||||| |
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| T |
46324478 |
atacaacacatgcaactactaagaatcgtgtaatagacttagcggcatcgttatttcatcatcaggtcagctcagaacttcttgatgaattcataaatgt |
46324379 |
T |
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| Q |
373 |
gattacttatttcctatgct |
392 |
Q |
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||||||| ||||||| |||| |
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| T |
46324378 |
gattactgatttcctctgct |
46324359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 324 - 387
Target Start/End: Original strand, 46519220 - 46519283
Alignment:
| Q |
324 |
tatttcatttgcagataagctcagaacttcttgatgaattcataaatgtgattacttatttcct |
387 |
Q |
| |
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|||||||||||||||| ||||||||| |||||||||||||| |||||||||||||| ||||||| |
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| T |
46519220 |
tatttcatttgcagatcagctcagaatttcttgatgaattcgtaaatgtgattactaatttcct |
46519283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 387
Target Start/End: Original strand, 46481416 - 46481467
Alignment:
| Q |
336 |
agataagctcagaacttcttgatgaattcataaatgtgattacttatttcct |
387 |
Q |
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||||||| ||||||||||||||| || ||||||||||||||||| ||||||| |
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| T |
46481416 |
agataagatcagaacttcttgataaaatcataaatgtgattactgatttcct |
46481467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 387
Target Start/End: Complemental strand, 46328842 - 46328796
Alignment:
| Q |
341 |
agctcagaacttcttgatgaattcataaatgtgattacttatttcct |
387 |
Q |
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| T |
46328842 |
agctcagaacttcatgatgaattcgtaaatgtaattactgatttcct |
46328796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 6e-47; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 250 - 373
Target Start/End: Complemental strand, 7493318 - 7493195
Alignment:
| Q |
250 |
ttacaagagaacaattgttctaaatacaacacacgcaactactaagaaccgggaaatagacatagcagcaagattatttcatttgcagataagctcagaa |
349 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
7493318 |
ttacaagtgaacaattgttctaaatagaacacacgcaactactaagaaccaggaattagacttagcagcaagattatttcatttgcagatcagctcagaa |
7493219 |
T |
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| Q |
350 |
cttcttgatgaattcataaatgtg |
373 |
Q |
| |
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||| |||||||||||||||||||| |
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| T |
7493218 |
ctttttgatgaattcataaatgtg |
7493195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 250 - 370
Target Start/End: Complemental strand, 7476628 - 7476508
Alignment:
| Q |
250 |
ttacaagagaacaattgttctaaatacaacacacgcaactactaagaaccgggaaatagacatagcagcaagattatttcatttgcagataagctcagaa |
349 |
Q |
| |
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||||||| |||||||||||||||||| ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||| |||||| ||||||||| |
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| T |
7476628 |
ttacaagtgaacaattgttctaaatagaacacacgcaactactaagaaccaggaattagacttagcagcaagattatttcattagcagatcagctcagaa |
7476529 |
T |
|
| Q |
350 |
cttcttgatgaattcataaat |
370 |
Q |
| |
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||| ||||||||||||||||| |
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| T |
7476528 |
ctttttgatgaattcataaat |
7476508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 7493389 - 7493332
Alignment:
| Q |
144 |
gggattatgtatgttgtgtattattaggtacattattattaatgacccttgtggagag |
201 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
7493389 |
gggattatgtatgttgtgtattattaggtaagatattattagtgacccttgtggagag |
7493332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 117
Target Start/End: Complemental strand, 7476751 - 7476692
Alignment:
| Q |
58 |
atgcaccaaatttcattgaccccgtttaattcaaaatacttgctgcaacaatgggattat |
117 |
Q |
| |
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||||||||| ||||| ||||||| |||||||||||| ||||||| ||||||||||||||| |
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| T |
7476751 |
atgcaccaattttcactgaccccttttaattcaaaagacttgctacaacaatgggattat |
7476692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 7476699 - 7476642
Alignment:
| Q |
144 |
gggattatgtatgttgtgtattattaggtacattattattaatgacccttgtggagag |
201 |
Q |
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|||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| |
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| T |
7476699 |
gggattatgtatgttgtgcattattaggtaagatattattagtgacccttgtggagag |
7476642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 117
Target Start/End: Complemental strand, 7493441 - 7493382
Alignment:
| Q |
58 |
atgcaccaaatttcattgaccccgtttaattcaaaatacttgctgcaacaatgggattat |
117 |
Q |
| |
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||||||||| ||||| ||||||| ||||||| |||| ||||||| ||||||||||||||| |
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| T |
7493441 |
atgcaccaattttcactgaccccttttaattgaaaagacttgctacaacaatgggattat |
7493382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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