View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15515_low_9 (Length: 245)
Name: NF15515_low_9
Description: NF15515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15515_low_9 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 66 - 245
Target Start/End: Complemental strand, 4663201 - 4663021
Alignment:
| Q |
66 |
taatgcttaatatttgacgattaactataccaaatctcatataagtcaaaagaaactatagcaaaacttatactaaatcattccactatttttgttattc |
165 |
Q |
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||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| ||||| |||||| |||||||||||||| |
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| T |
4663201 |
taatgctcaatatttgacgattaactataccaaaactcatacgagtcaaaagaaactataacaaaacttataataaattattccattatttttgttattc |
4663102 |
T |
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| Q |
166 |
caactatataaatttcaaggaaata-atttgaggataaaattacacagtaggagtattattttcatgaccaagttgcatat |
245 |
Q |
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| T |
4663101 |
caactatataaatttcaaggagacatagctgacgataaaattacacatcaagagtattattttcatgaccaagttgcatat |
4663021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 66 - 245
Target Start/End: Complemental strand, 4747013 - 4746829
Alignment:
| Q |
66 |
taatgcttaatatttgacgattaactataccaaatctcatataagtcaaaagaaactatagcaaaacttatactaaatcattccactatttttgttattc |
165 |
Q |
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||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||| |||||||||| ||| |
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| T |
4747013 |
taatgctcaatatttgacgattaacaataccaaaattcatacgagtcaaaagaaactatagcaaaacttataataaattattccattatttttgtttttc |
4746914 |
T |
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| Q |
166 |
caactatataaatttcaagga--aata---atttgaggataaaattacacagtaggagtattattttcatgaccaagttgcatat |
245 |
Q |
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| T |
4746913 |
caactatataaatttcaaggaggcatatatagttgatgataaaattacacattaagagtattattttcatgaccaagttgcatat |
4746829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 66 - 245
Target Start/End: Complemental strand, 3745760 - 3745582
Alignment:
| Q |
66 |
taatgcttaatatttgacgattaactataccaaatctcatataagtcaaaagaaactatagcaaaacttatactaaatcattccactatttttgttattc |
165 |
Q |
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||||||| ||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| ||||| ||| | |||||||||||||| |
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| T |
3745760 |
taatgctcaatatttgacgattaactatatcaaaactcatacgagtcaaaagaaactatagcaaaacttataataaattattttattatttttgttattc |
3745661 |
T |
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| Q |
166 |
caactatataaatttcaaggaaataatttgaggataaaattacacagtaggagtattattttcatgaccaagttgcatat |
245 |
Q |
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| T |
3745660 |
caactacataaatttcaaggaga-catttgacgataaaattacatatcaagagtattattgtcatgaccaagttgcatat |
3745582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 18936998 - 18936878
Alignment:
| Q |
122 |
tatagcaaaacttatactaaatcattccactatttttgttattccaactatataaatttcaaggaaata-atttgaggataaaattacacagtaggagta |
220 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||| ||||| |
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| T |
18936998 |
tatagcaaaacttataataaatcattccactatttttgttattccaactatataaatttcaaggaaatatttttgatgataaaattacatagtaagagta |
18936899 |
T |
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| Q |
221 |
ttattttcatgaccaagttgc |
241 |
Q |
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| T |
18936898 |
ttattttcaggaccaagttgc |
18936878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 66 - 241
Target Start/End: Complemental strand, 18941394 - 18941220
Alignment:
| Q |
66 |
taatgcttaatatttgacgattaactataccaaatctcatataagtcaaaagaaactatagcaaaacttatactaaatcattccactatttttgttattc |
165 |
Q |
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||||||| | ||||||| |||||||||||||||| |||||| ||| |||| |||||||||||||| |||| || | |||||| ||||||| |||||| |
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| T |
18941394 |
taatgctcagtatttgatgattaactataccaaaactcatacgagtaaaaa--aactatagcaaaacatataatagactattccattatttttattattc |
18941297 |
T |
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| Q |
166 |
caactatataaatttcaaggaaata-atttgaggataaaattacacagtaggagtattattttcatgaccaagttgc |
241 |
Q |
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||||||||||||||||||| | ||| |||||| |||||||||||| || | |||||||||||||||||||||||||| |
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| T |
18941296 |
caactatataaatttcaagaagatatatttgatgataaaattacatagcaagagtattattttcatgaccaagttgc |
18941220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 18937030 - 18936995
Alignment:
| Q |
102 |
tcatataagtcaaaagaaactatagcaaaacttata |
137 |
Q |
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| T |
18937030 |
tcatataagtcaaaagaaactatagcaaaacttata |
18936995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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