View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15516_high_1 (Length: 848)

Name: NF15516_high_1
Description: NF15516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15516_high_1
NF15516_high_1
[»] chr1 (13 HSPs)
chr1 (289-595)||(38139252-38139558)
chr1 (660-832)||(38138992-38139164)
chr1 (660-820)||(7892158-7892320)
chr1 (16-104)||(38160684-38160772)
chr1 (24-104)||(38116859-38116939)
chr1 (703-817)||(3299745-3299860)
chr1 (327-415)||(45985223-45985305)
chr1 (746-817)||(43067867-43067938)
chr1 (746-817)||(43082897-43082968)
chr1 (663-788)||(40036163-40036294)
chr1 (746-817)||(43044053-43044124)
chr1 (527-581)||(7892452-7892507)
chr1 (663-719)||(32574588-32574645)
[»] chr8 (3 HSPs)
chr8 (327-547)||(4618280-4618497)
chr8 (692-821)||(4618688-4618815)
chr8 (662-765)||(4296448-4296563)
[»] chr4 (5 HSPs)
chr4 (16-104)||(49004661-49004749)
chr4 (747-817)||(4230525-4230595)
chr4 (708-788)||(19965641-19965722)
chr4 (462-526)||(4230213-4230277)
chr4 (151-209)||(49003257-49003315)


Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 289 - 595
Target Start/End: Complemental strand, 38139558 - 38139252
Alignment:
Q  289 atatgtctaatccggacaacgtcgggtgtataaactagtaattaaaaataaaaatatactagtaacatgacacccgtcagacatttataacttgaactga 388  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38139558 atatgtctaatctggacaacgtcgggtgtataaactagtaattaaaaataaaaatatactagtaacatgacacccgtcagacatttataacttgaactga 38139459  T
Q  389 tacctccctcctgtttcaatgtcctgtccagtttaattacctaggtataatatttacagtatatgctaatataataacattggcatttggcaaatataac 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38139458 tacctccctcctgtttcaatgtcctgtccagtttaattacctaggtataatatttacagtatatgctaatataataacattggcatttggcaaatataac 38139359  T
Q  489 ttctgtaaatgtgggggttcctactaggcaaatgtaaattttagacacaaataacaaatgataagagattatgcaacaagtgacattcaaaaacacgcct 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38139358 ttctgtaaatgtgggggttcctactaggcaaatgtaaattttagacacaaataacaaatgataagagattatgcaacaagtgacattcaaaaacatgcct 38139259  T
Q  589 gacccag 595  Q
    |||||||    
T  38139258 gacccag 38139252  T

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Target: chr1; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 660 - 832
Target Start/End: Complemental strand, 38139164 - 38138992
Alignment:
Q  660 cagcaggtccggaaatttgctgcttacaaaatcaagtattcacacaagacacagtaatcatagcataaaaacgaaaaagaaacggcctgccaccatcaat 759  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38139164 cagcaggtccggaaatttgctgcttacaaaatcaagtattcacacaagacacagtaatcatagcataaaaacgaaaaagaaacggcctgccaccatcaat 38139065  T
Q  760 ctagaagccagttcttggaacaaaagctgtgagatgacggtgcagacttgacacttaacctgaatcaagttta 832  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38139064 ctagaagccagttcttggaacaaaagctgtgagatgacggtgcagacttgacacttaacctgaatcaagttta 38138992  T

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Target: chr1; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 660 - 820
Target Start/End: Complemental strand, 7892320 - 7892158
Alignment:
Q  660 cagcaggtccggaaatttgctgcttacaaaatc-aagtattcacacaagacacagtaatcatagcataaaaacgaaaaagaaacgg-cctgccaccatca 757  Q
    ||||||| | ||||| || |||||||||||||| |||||||||||| ||||||| |||||||||||||||||| ||||||||| || |||||||||  |     
T  7892320 cagcaggcctggaaactttctgcttacaaaatccaagtattcacactagacacaataatcatagcataaaaacaaaaaagaaatggacctgccaccgccg 7892221  T
Q  758 atctagaagccagttcttggaacaaaagctgtgagatgacggtgcagacttgacacttaacct 820  Q
    ||||||||||||||||| |||||||||||||  |||||||||||||||| | |||||||||||    
T  7892220 atctagaagccagttctaggaacaaaagctgctagatgacggtgcagacatcacacttaacct 7892158  T

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Target: chr1; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 38160772 - 38160684
Alignment:
Q  16 aatattaaaagtgaaagatagtttcagctttgaatgttcaatggtaacttcatatctcacataatcagtttctcttcaaattcattgca 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  38160772 aatattaaaagtgaaagatagtttcagctttgaatgttcaatggtaacttcataactcgcataatcagtttctcttcaaattcattgca 38160684  T

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Target: chr1; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 38116939 - 38116859
Alignment:
Q  24 aagtgaaagatagtttcagctttgaatgttcaatggtaacttcatatctcacataatcagtttctcttcaaattcattgca 104  Q
    |||||||||||||||| | | ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  38116939 aagtgaaagatagtttaaacattgaatgttcaatggtaacttcattactcacataatcagtttctcttcaaattcattgca 38116859  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 703 - 817
Target Start/End: Original strand, 3299745 - 3299860
Alignment:
Q  703 acaagacacagtaatcatagcataaaaacgaaaaagaaacggcc-tgccaccatcaatctagaagccagttcttggaacaaaagctgtgagatgacggtg 801  Q
    |||| |||||| | ||| |||||||| ||| ||||||||  ||| ||||||| || ||| |||| |||||| | |||||||||| || ||||||||||||    
T  3299745 acaaaacacagaagtcaaagcataaacacggaaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacggtg 3299844  T
Q  802 cagacttgacacttaa 817  Q
    ||||||||||||||||    
T  3299845 cagacttgacacttaa 3299860  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 327 - 415
Target Start/End: Complemental strand, 45985305 - 45985223
Alignment:
Q  327 taattaaaaataaaaatatactagtaacatgacacccgtcagacatttataacttgaactgatacctccctcctgtttcaatgtcctgt 415  Q
    |||||||||||||| |||||||||||||||||||||||| |||| |     |||||||| | |||||||| ||||||||||||||||||    
T  45985305 taattaaaaataaacatatactagtaacatgacacccgttagacct-----acttgaacaggtacctccc-cctgtttcaatgtcctgt 45985223  T

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Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 746 - 817
Target Start/End: Complemental strand, 43067938 - 43067867
Alignment:
Q  746 ctgccaccatcaatctagaagccagttcttggaacaaaagctgtgagatgacggtgcagacttgacacttaa 817  Q
    |||||||| || |||||||| ||||||||  |||||||||||  ||||||| ||||||||||||||||||||    
T  43067938 ctgccaccgtcgatctagaacccagttctgagaacaaaagctaagagatgaaggtgcagacttgacacttaa 43067867  T

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Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 746 - 817
Target Start/End: Original strand, 43082897 - 43082968
Alignment:
Q  746 ctgccaccatcaatctagaagccagttcttggaacaaaagctgtgagatgacggtgcagacttgacacttaa 817  Q
    |||||||| || |||||||| ||||||||  |||||||||||  ||||||| ||||||||||||||||||||    
T  43082897 ctgccaccgtcgatctagaacccagttctgagaacaaaagctaagagatgaaggtgcagacttgacacttaa 43082968  T

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Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 663 - 788
Target Start/End: Complemental strand, 40036294 - 40036163
Alignment:
Q  663 caggtccggaaatttgctgcttacaaaatc-aagtattcacacaagacacagtaatcatagcataaaaacgaaaaagaaacgg-cctgccacc----atc 756  Q
    |||||||  ||| |||||||||| | |||| |||||||||||| ||||| | || |||||||||| |||| |||||||||||| |||||||||    |||    
T  40036294 caggtccataaacttgctgcttagataatccaagtattcacactagacataatattcatagcatacaaacaaaaaagaaacggtcctgccaccgtcgatc 40036195  T
Q  757 aatctagaagccagttcttggaacaaaagctg 788  Q
     | ||||||| ||||||| |||||||||||||    
T  40036194 tagctagaagtcagttctgggaacaaaagctg 40036163  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 746 - 817
Target Start/End: Original strand, 43044053 - 43044124
Alignment:
Q  746 ctgccaccatcaatctagaagccagttcttggaacaaaagctgtgagatgacggtgcagacttgacacttaa 817  Q
    |||||||| || |||||||| ||||||||  ||||| |||||  ||||||| ||||||||||||||||||||    
T  43044053 ctgccaccgtcgatctagaacccagttctgagaacacaagctaagagatgaaggtgcagacttgacacttaa 43044124  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 527 - 581
Target Start/End: Complemental strand, 7892507 - 7892452
Alignment:
Q  527 ttttagacacaaataacaaatgataagag-attatgcaacaagtgacattcaaaaa 581  Q
    ||||||||| |||||||||||||| |||| |||||||| || ||||||||||||||    
T  7892507 ttttagacaaaaataacaaatgatcagagcattatgcagcatgtgacattcaaaaa 7892452  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 663 - 719
Target Start/End: Complemental strand, 32574645 - 32574588
Alignment:
Q  663 caggtccggaaatttgctgcttacaaaat-caagtattcacacaagacacagtaatca 719  Q
    ||||||| |||| |||||||||||||||| ||||||||||| | ||||||| ||||||    
T  32574645 caggtccagaaacttgctgcttacaaaatccaagtattcacgctagacacaataatca 32574588  T

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Target: chr8 (Bit Score: 90; Significance: 5e-43; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 327 - 547
Target Start/End: Original strand, 4618280 - 4618497
Alignment:
Q  327 taattaaaaataaaaatatactagtaacatgacacccgtcagacatttataacttgaactgatacctccctcctgtttcaatgtcctgtccagtttaatt 426  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| || ||||| ||||||||||||||| || |  |||||||    
T  4618280 taattaaaaataaaaatatactagtaacatgaca-ccgtcagacctttgtaacttgaactggtatctccc-cctgtttcaatgtcccgtaccatttaatt 4618377  T
Q  427 acctaggtataatatt--tacagtatatgctaatataataacattggcatttggcaaatataacttctgtaaatgtgggggttcctactaggcaaatgta 524  Q
    |||| |||||||||||   |    |||| |||||   |||||||||||||| |||||| |||||| |||||||| ||||||||||||||  |||||||||    
T  4618378 accttggtataatattcgaatcacatatactaat---ataacattggcattaggcaaagataactgctgtaaatttgggggttcctacttagcaaatgta 4618474  T
Q  525 aattttagacacaaataacaaat 547  Q
    |||||||||||  ||||||||||    
T  4618475 aattttagacaagaataacaaat 4618497  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 692 - 821
Target Start/End: Original strand, 4618688 - 4618815
Alignment:
Q  692 caagtattcacacaagacacagtaatcatagcataaaaacgaaaaagaaacggcc-tgccaccatcaatctagaagccagttcttggaacaaaagctgtg 790  Q
    ||||| ||||||  ||||||| |||| | ||||||||| |||||||||||  ||| ||||||  ||||||||||| | |||||| ||||||||| |||      
T  4618688 caagtgttcacattagacacaataattaaagcataaaa-cgaaaaagaaatagccctgccacagtcaatctagaaccgagttctaggaacaaaaactg-- 4618784  T
Q  791 agatgacggtgcagacttgacacttaacctg 821  Q
    | ||||| |||||||||||||||||||||||    
T  4618785 atatgacagtgcagacttgacacttaacctg 4618815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 662 - 765
Target Start/End: Original strand, 4296448 - 4296563
Alignment:
Q  662 gcaggtccggaaatttgctgcttacaaaat-caagtattcac---acaagacacagtaat--catagcataaaaac-----gaaaaagaaacggcc-tgc 749  Q
    ||||||| ||||| |||||||||||||||| |||||||||||   || ||||||||||||  ||||||||||||||     ||||||||||||||| |||    
T  4296448 gcaggtctggaaacttgctgcttacaaaatccaagtattcacactactagacacagtaatcacatagcataaaaacaaaatgaaaaagaaacggccatgc 4296547  T
Q  750 caccatcaatctagaa 765  Q
    |||| || ||||||||    
T  4296548 caccgtcgatctagaa 4296563  T

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Target: chr4 (Bit Score: 69; Significance: 2e-30; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 49004749 - 49004661
Alignment:
Q  16 aatattaaaagtgaaagatagtttcagctttgaatgttcaatggtaacttcatatctcacataatcagtttctcttcaaattcattgca 104  Q
    |||||| ||||||||||||||||| | | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  49004749 aatatttaaagtgaaagatagtttaaacattgaatgttcaatggtaacttcataactcacataatcagtttctcttcaaattcattgca 49004661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 747 - 817
Target Start/End: Original strand, 4230525 - 4230595
Alignment:
Q  747 tgccaccatcaatctagaagccagttcttggaacaaaagctgtgagatgacggtgcagacttgacacttaa 817  Q
    ||||||| || |||||||| |||||||| ||||||||||||| ||||||||||||||||||| ||||||||    
T  4230525 tgccaccgtcgatctagaacccagttctgggaacaaaagctgggagatgacggtgcagacttcacacttaa 4230595  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 708 - 788
Target Start/End: Complemental strand, 19965722 - 19965641
Alignment:
Q  708 acacagtaatcatagcataaaaacgaaaaagaaacgg-cctgccaccatcaatctagaagccagttcttggaacaaaagctg 788  Q
    ||||| |||||||||||||||||| ||||||||| || ||||||||  || ||||||||||||||||| ||||| |||||||    
T  19965722 acacactaatcatagcataaaaaccaaaaagaaatggccctgccactgtcgatctagaagccagttctgggaacgaaagctg 19965641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 462 - 526
Target Start/End: Original strand, 4230213 - 4230277
Alignment:
Q  462 ataacattggcatttggcaaatataacttctgtaaatgtgggggttcctactaggcaaatgtaaa 526  Q
    |||||| ||||||||||| || |||||| |||||||| ||||| ||||||||  |||||||||||    
T  4230213 ataacaatggcatttggccaaaataactactgtaaatttggggtttcctacttagcaaatgtaaa 4230277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 49003315 - 49003257
Alignment:
Q  151 tgattgttggagtctcaaacttgtaagagaagagaaggaatgcagcagagtcaaagagc 209  Q
    |||||||||||||||| || |||| |||||||| ||||| || |||||||| |||||||    
T  49003315 tgattgttggagtctccaagttgtgagagaagaaaaggattgtagcagagtgaaagagc 49003257  T

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