View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15516_high_10 (Length: 235)
Name: NF15516_high_10
Description: NF15516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15516_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 1459480 - 1459279
Alignment:
| Q |
15 |
taatgtagggttatctacattacgtcttccctacattcaataatttgactcatttggtgctcaactatagtcacagtatagatctgcagatgctccacga |
114 |
Q |
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| T |
1459480 |
taatgtagggttatctacattacgtcttccctgcattcaataatttgactcatttggtgctcaactatagtcacagtatagatctgcagatgctccacga |
1459381 |
T |
|
| Q |
115 |
ttgccccaagcttcaaactcttgacctttatcaggtttgtttcttataatttatcaattatatttgannnnnnnnccttccttttcttaacatacatgta |
214 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
1459380 |
ttgccccaagcttcaaactcttgaactttatcaggtttgtttctta-attttaacaattatatttgattttttttccttccttttcttaacatacatgta |
1459282 |
T |
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| Q |
215 |
tgt |
217 |
Q |
| |
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||| |
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| T |
1459281 |
tgt |
1459279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 12105289 - 12105347
Alignment:
| Q |
122 |
aagcttcaaactcttgacctttatcaggtttgtttcttataatttatcaattatatttga |
181 |
Q |
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| T |
12105289 |
aagcttcaaaatcttgacctttttcaggtttgtttctta-aatttaacaatcatatttga |
12105347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 160
Target Start/End: Complemental strand, 1446138 - 1446022
Alignment:
| Q |
44 |
cctacattcaataatttgactcatttggtgctcaactatagtcacagtatagatctgcagatgctccacgattgccccaagcttcaaactcttgaccttt |
143 |
Q |
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| T |
1446138 |
cctacattccataatttgactcatttggtgctcagctacagttggggtatagttcaacgtgtgctctacctttgccctaagcttcaaaatattgaatttt |
1446039 |
T |
|
| Q |
144 |
atcaggtttgtttctta |
160 |
Q |
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| T |
1446038 |
atcaggtttgtttctta |
1446022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 12105211 - 12105243
Alignment:
| Q |
44 |
cctacattcaataatttgactcatttggtgctc |
76 |
Q |
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| T |
12105211 |
cctacattccataatttgactcatttggtgctc |
12105243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 974078 - 974027
Alignment:
| Q |
105 |
tgctccacgattgccccaagcttcaaactcttgacctttatcaggtttgttt |
156 |
Q |
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| T |
974078 |
tgctccatcattgccctaagcttcaaaatcttgacctttatcaggtttgttt |
974027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 178
Target Start/End: Complemental strand, 965532 - 965460
Alignment:
| Q |
105 |
tgctccacgattgccccaagcttcaaactcttgacctttatcaggtttgtttcttataatttatcaattatatt |
178 |
Q |
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| T |
965532 |
tgctccatcattgccctaagcttcaaaatcttgaactttatcaggtttgtttgtta-aatttaacaatcatatt |
965460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 821147 - 821195
Alignment:
| Q |
105 |
tgctccacgattgccccaagcttcaaactcttgacctttatcaggtttg |
153 |
Q |
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| T |
821147 |
tgctccaccattgccctaagcttcaaaatcttgaactttatcaggtttg |
821195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 982147 - 982096
Alignment:
| Q |
105 |
tgctccacgattgccccaagcttcaaactcttgacctttatcaggtttgttt |
156 |
Q |
| |
|
|||||||| ||||| |||||||||| |||||||||||||||||||||||| |
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| T |
982147 |
tgctccaccattgctttaagcttcaaaatcttgacctttatcaggtttgttt |
982096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 1399496 - 1399535
Alignment:
| Q |
45 |
ctacattcaataatttgactcatttggtgctcaactatag |
84 |
Q |
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|||||||| |||||||||||||| |||||||||||||||| |
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| T |
1399496 |
ctacattccataatttgactcatctggtgctcaactatag |
1399535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 1403200 - 1403239
Alignment:
| Q |
44 |
cctacattcaataatttgactcatttggtgctcaactata |
83 |
Q |
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| T |
1403200 |
cctacattccataatttgactcatctggtgctcaactata |
1403239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 45810614 - 45810576
Alignment:
| Q |
44 |
cctacattcaataatttgactcatttggtgctcaactat |
82 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |
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| T |
45810614 |
cctacattcaataatttgactcatttggtggtcaactat |
45810576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 10116814 - 10116763
Alignment:
| Q |
105 |
tgctccacgattgccccaagcttcaaactcttgacctttatcaggtttgttt |
156 |
Q |
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|||||||| ||||||| || ||||||| |||||| ||||||||||||||||| |
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| T |
10116814 |
tgctccaccattgccctaaccttcaaaatcttgaactttatcaggtttgttt |
10116763 |
T |
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