View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15516_high_2 (Length: 582)
Name: NF15516_high_2
Description: NF15516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15516_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 540; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 20 - 574
Target Start/End: Complemental strand, 42688662 - 42688107
Alignment:
| Q |
20 |
ctagtagcataagcttttgcagaagtctcattgattcttctcagaaatgggatgaatgtatcatggtaatctagtatgaataacctcccagcagcaagtg |
119 |
Q |
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| T |
42688662 |
ctagtagcataagcttttgcagaagtctcattgattcttctcagaaatgggatgaatgtatcatggtaatctagtatgaataacctcccaccagcaagtg |
42688563 |
T |
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| Q |
120 |
cctgttccacacaattaatcttaatcacttcatgttgccaaaaacatggtcatttgaatttacaatgcaagattaaaatcatactagtactttttaatta |
219 |
Q |
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| T |
42688562 |
cctgttccacacaattaatcttaatcacttcatgttgccaaaaacatggtcatttgaatttacaatgcaagattaaaatcatactagtactttttaatta |
42688463 |
T |
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| Q |
220 |
agattaaaatgattttacctcgtctactgtgctcccatcaagttccaatgcatctgcagttatcttactagtttgatcaccatatactgtgggatcaaga |
319 |
Q |
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| T |
42688462 |
agattaaaatgattttacctcgtctactgtgctcccatcaagttccaatgcatctgcagttatcttactagtttgatcaccatatactgtgggatcaaga |
42688363 |
T |
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| Q |
320 |
ttgc-ttttggaggaaactcctaccattcattaaaaataaatatcatgaagaaatatgataatacatgactctatattataccatagacattcattttat |
418 |
Q |
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| T |
42688362 |
ttgctttttggaggaaactcctaccattcattaaaaataaatatcatgaagaaatatgataatacatgactctatattataccatagacattcattttat |
42688263 |
T |
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| Q |
419 |
tatgaatatacatcaataaacaaatttaacactgatatcaatcaaaataattagattattcaaaatgtttagcaataaatactcgaacttactttaagac |
518 |
Q |
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| T |
42688262 |
tatgaatatacatcaataaacaaatttaacactgatatcaatcaaaataattagattatacaaaatgtttagcaataaatactcgaacttactttaagac |
42688163 |
T |
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| Q |
519 |
cacgaatcatgcaaggatttacaccagcaagcatttctcttgcaaactcttcatct |
574 |
Q |
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| T |
42688162 |
cacgaatcatgcaaggatttacaccagcaagcatttctcttgcaaactcttcatct |
42688107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 533 - 573
Target Start/End: Original strand, 42693652 - 42693692
Alignment:
| Q |
533 |
ggatttacaccagcaagcatttctcttgcaaactcttcatc |
573 |
Q |
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| T |
42693652 |
ggatttactccagctagcatttctcttgcaaattcttcatc |
42693692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 237 - 327
Target Start/End: Original strand, 21848296 - 21848386
Alignment:
| Q |
237 |
cctcgtctactgtgctcccatcaagttccaatgcatctgcagttatcttactagtttgatcaccatatactgtgggatcaagattgctttt |
327 |
Q |
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| T |
21848296 |
cctcatctgctgtgcacccatcaagttccaatgcatctggagttatcttactagtttgatcactatatattgtgggttctagattgctttt |
21848386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 533 - 573
Target Start/End: Complemental strand, 36744716 - 36744676
Alignment:
| Q |
533 |
ggatttacaccagcaagcatttctcttgcaaactcttcatc |
573 |
Q |
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| T |
36744716 |
ggatttacaccagcaagcatttctcttgcaaattcttcatc |
36744676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 518 - 573
Target Start/End: Original strand, 46710869 - 46710924
Alignment:
| Q |
518 |
ccacgaatcatgcaaggatttacaccagcaagcatttctcttgcaaactcttcatc |
573 |
Q |
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| T |
46710869 |
ccacgaattatgacaggatttacaccagccagcatttctctagcaaattcttcatc |
46710924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 532 - 573
Target Start/End: Original strand, 6451378 - 6451419
Alignment:
| Q |
532 |
aggatttacaccagcaagcatttctcttgcaaactcttcatc |
573 |
Q |
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| T |
6451378 |
aggatttacaccagcaagcatctctcttccaaattcttcatc |
6451419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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