View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15516_high_4 (Length: 527)
Name: NF15516_high_4
Description: NF15516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15516_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 21 - 512
Target Start/End: Complemental strand, 8156157 - 8155665
Alignment:
| Q |
21 |
agtgtttgctattgtaaaatataatggattaaattgattggtagagtttaaattcatctccatgtttgtttgaaaaactaagaaaccacgttggtgccgc |
120 |
Q |
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| T |
8156157 |
agtgtttgctattgtaaaatataatggattaaattgattggtagagtttaaattcatctccatgtttgtttgaaaaactaagaaactacgttggtgccgc |
8156058 |
T |
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| Q |
121 |
acatttgaccaactctattatttgtggcttctacaaattcacgtttatattacattgggacgcaaaaaagcattcgaaacgtccatcaaaagacattatt |
220 |
Q |
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| T |
8156057 |
acatttgaccaactctattatttgtggcttctacaaattcacgtttatattacattgggacgcaaaaaagcattcgaaacgtccatcaaaagacattatt |
8155958 |
T |
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| Q |
221 |
catgtgttgtagtgtcgnnnnnnncttttaattggtactaatattannnnnnngtaaacgtgcccaaaagtagtagtgcaccttccccaactttctctcg |
320 |
Q |
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| T |
8155957 |
catgtgttgcagtgtcgtttttttcttttaattggtactaatattatttttttgtaaacgtacccaaaagtagtagtgcaccttcaccaactttctctcg |
8155858 |
T |
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| Q |
321 |
ttttataacctagcgtggttaaacaccaccatttt-ccccagcaaaacaaataacacatgcaaagctctactcaccattttctatgctttcgtctttcct |
419 |
Q |
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| T |
8155857 |
ttttataacctagcgtggttaaacaccaccattttcccccagcaaaacaaataacacatgcaaagctctactcaccattttctatgctttcgtctttcct |
8155758 |
T |
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| Q |
420 |
tttttcatttatacagcaaatattaattatagaattattaaacccaaatcacatcatgtaagtaaaagttcaaacaatacgtgtcaactagat |
512 |
Q |
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| T |
8155757 |
tttttcatttatacagcaaatattaattatagaattattaaacccaaatcacatcatgtaagtaaaagttcaaacaatacgtgtcaactagat |
8155665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 32300496 - 32300387
Alignment:
| Q |
87 |
tgtttgaaaaactaagaaaccacgttggtgccgcacatttgaccaactctattatttgtggcttctacaaattcacgtttatattacattgggacgc-aa |
185 |
Q |
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|||||| ||| ||||||||||||||| |||||| |||||| ||||||| ||||||| |||||| ||||||| ||||| |||| ||| ||||||| | |
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| T |
32300496 |
tgtttggaaatctaagaaaccacgtttccaccgcacgtttgactaactctactatttgttgcttctgcaaattcgcgtttgtattgcatagggacgcgag |
32300397 |
T |
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| Q |
186 |
aaaagcattc |
195 |
Q |
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| T |
32300396 |
aaaagcattc |
32300387 |
T |
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