View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15516_high_6 (Length: 348)
Name: NF15516_high_6
Description: NF15516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15516_high_6 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 10 - 348
Target Start/End: Complemental strand, 28915123 - 28914785
Alignment:
| Q |
10 |
acatcatcaggtatccatagatcaagtttgagacttaagctagaggatattaatttttgtagctatctactagtctactgatataccaatttctttgcaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28915123 |
acatcatcaggtatccatagatcaagtttgagacttaagctagaggatattaatttttgtagctatctactagtctactgatataccaatttctttgcaa |
28915024 |
T |
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| Q |
110 |
tcaagcattaaattaatgctattcacttgtttcaactattcttttgcctgaaatataaatgcaacagatcctcacctgaacacatgcttgataaaatcta |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28915023 |
tcaagcattaaattaatgctattcacttgtttcaactattcttttgcctgaaatataaatgcaacagatcctcacctgaacacatgcttgataaaatcta |
28914924 |
T |
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| Q |
210 |
atattcattttttcgtttggtaattaaaatgtaaaggtagtagccaatacatgttttgactcttcgacattgatgtcaacgtctatttattccattgtag |
309 |
Q |
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| T |
28914923 |
atattcattttttcgtttggtaattaaaatgtaaaggtagtagccaacacatgttttgactcttcgacattgatgtcaacgtctatttattccattgtag |
28914824 |
T |
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| Q |
310 |
aaattatagaaagctatatctccacatggttattagggc |
348 |
Q |
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| T |
28914823 |
aaattatagaaagctatatctccacatggttattagggc |
28914785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 91 - 348
Target Start/End: Complemental strand, 28924272 - 28924015
Alignment:
| Q |
91 |
tataccaatttctttgcaatcaagcattaaattaatgctattcacttgtttcaactattcttttgcctgaaatataaatgcaacagatcctcacctgaac |
190 |
Q |
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|||||||||||||| |||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | |
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| T |
28924272 |
tataccaatttcttcaaaatctagccttaaattaatgctgttcacttgtttcaactattcttttgcctgaaatataaatgtaacagatcctcaccttacc |
28924173 |
T |
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| Q |
191 |
acatgcttgataaaatctaatattcattttttcgtttggtaattaaaatgtaaaggtagtagccaatacatgttttgactcttcgacattgatgtcaacg |
290 |
Q |
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|||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| | ||||||||||||||| |||||||| ||||| | |
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| T |
28924172 |
acatgcttgataaaatctaatattcattattttgtttgataattaaaatgtaaaggtagtagccagtgcatgttttgactctttgacattgaagtcaaag |
28924073 |
T |
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| Q |
291 |
tctatttattccattgtagaaattatagaaagctatatctccacatggttattagggc |
348 |
Q |
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||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
28924072 |
tctatttcttccattgtagaaatcatagaaagctatatgtccacatggttattagggc |
28924015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 14 - 344
Target Start/End: Complemental strand, 28900684 - 28900355
Alignment:
| Q |
14 |
catcaggtatccatagatcaagtttgagacttaagctagaggatattaatttttgtagctatctactagtctactgatataccaatttctttgcaatcaa |
113 |
Q |
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|||||||||||||||||||||| ||||||| |||||||||| |||||||| |||| |||||||||| ||||| || |||||||||||||| |||| | |
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| T |
28900684 |
catcaggtatccatagatcaagcttgagacataagctagagtatattaatatttgcagctatctacgagtcttctattataccaatttcttcaaaatcta |
28900585 |
T |
|
| Q |
114 |
gcattaaattaatgctattcacttgtttcaactattcttttgcctgaaatataaatgcaacagatcctcacctgaacacatgcttgataaaatctaatat |
213 |
Q |
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|| || |||| || ||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| | ||||||||||||||||||| | || |
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| T |
28900584 |
gcctttaatttatcctagtcacttgtttcaactattcttttgcc-gaaatataaatgcaacagaccctcaccttaccacatgcttgataaaatcttaaat |
28900486 |
T |
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| Q |
214 |
tcattttttcgtttggtaattaaaatgtaaaggtagtagccaatacatgttttgactcttcgacattgatgtcaacgtct-atttattccattgtagaaa |
312 |
Q |
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||||| || ||||||||||||| |||| ||||||||||||||||||| |||||||||||| ||| ||| | || |||| |||| ||| |||||||||| |
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| T |
28900485 |
tcattactttgtttggtaattaacatgttaaggtagtagccaatacat-ttttgactcttcaacaatgaagcaaatgtctaatttcttcaattgtagaaa |
28900387 |
T |
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| Q |
313 |
ttatagaaagctatatctccacatggttatta |
344 |
Q |
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| T |
28900386 |
tcatagaaagctatatctccaaatggttatta |
28900355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 345
Target Start/End: Complemental strand, 28933225 - 28932887
Alignment:
| Q |
14 |
catcaggtatccatagatcaagtttgagacttaagctagaggatattaatttttgtagctatctactagtctactgatataccaatttctttgcaatcaa |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || ||||| ||| |||||||||||||||||||| |||||||||||||| |||| | |
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| T |
28933225 |
catcaggtatccatagatcaagtttgagacttaagctagagtattttaatatttatagctatctactagtctactactataccaatttcttcaaaatcta |
28933126 |
T |
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| Q |
114 |
gcattaaattaatgctattcacttgtttcaactattcttttgcctgaaatataaatgcaacagatcctcacctgaacacatgcttgataaaatctaatat |
213 |
Q |
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| T |
28933125 |
tccttcggttaatgctattcgcatgtttaaactattcttttgcctg-aatataaatgcaatggattcatgccttaccacatgctggataatatctcatgt |
28933027 |
T |
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| Q |
214 |
tcattttttcgtttggtaa-ttaaaatgtaaaggtagtagccaatacatgttttgactcttcgacattgatgtcaac-gt-------ctatttattccat |
304 |
Q |
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|||| || | | ||||||| |||||||||||||||||||||||||||||||||||||||||| | |||| |||||| || | |||| |||||| |
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| T |
28933026 |
tcatattat-gcttggtaagttaaaatgtaaaggtagtagccaatacatgttttgactcttctgcgttgaagtcaactgtcaaagcccaatttcttccat |
28932928 |
T |
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| Q |
305 |
tgtagaaattatagaaagctatatctccacatggttattag |
345 |
Q |
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||||| ||| |||||||||||||||| |||||||||||| |
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| T |
28932927 |
tgtagtaatcatagaaagctatatctatgcatggttattag |
28932887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 28924334 - 28924286
Alignment:
| Q |
14 |
catcaggtatccatagatcaagtttgagacttaagctagaggatattaa |
62 |
Q |
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||||||||||||||| |||||| |||||| ||||||| ||| ||||||| |
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| T |
28924334 |
catcaggtatccatatatcaagattgagatttaagctggagcatattaa |
28924286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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