View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15516_high_8 (Length: 281)
Name: NF15516_high_8
Description: NF15516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15516_high_8 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 264
Target Start/End: Complemental strand, 6383729 - 6383466
Alignment:
| Q |
8 |
aaatggatgacaatcattagattatgaaggtccatcttaactatcatggatgttttacaccatatttttccaaatttgttgttcagttcatccc---gtt |
104 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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|
| T |
6383729 |
aaatggatgacaatcattagattatggaggtccatcttaactatcatggatgttttacaccatatttttccaaatttgttgttcagttcacccctttgtt |
6383630 |
T |
|
| Q |
105 |
tttctctct--gcgttttctttatctctct--accgtggtaccaccgcattgtaacagtgtttcatcacagtaacaaacatcactagatttggatgctta |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
6383629 |
tttctctctctgcgttttctttatctctctctaccgtggtaccaccgcattgtcacagtgtttcatcacagtaacaaacatcactagaattggatgctta |
6383530 |
T |
|
| Q |
201 |
ttacccaaaataatttctaaagacaacaaaaacaaacacatgcttatactctaatgggatatct |
264 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6383529 |
ttatccaaaataatttctaaagacaacaaaaacaaacacatgcttatactctaatgggatatct |
6383466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 264
Target Start/End: Original strand, 40550950 - 40551211
Alignment:
| Q |
8 |
aaatggatgacaatcattagattatgaaggtccatcttaactatcatggatgttttacaccatatttttccaaatttgttgttcagttcatccc---gtt |
104 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| |
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|
| T |
40550950 |
aaatggatggcaaccattagattatgaaggtccatcttaactatcatggatgttttacaccatatttttttaaatttgttgttcagttcacccctttgtt |
40551049 |
T |
|
| Q |
105 |
ttt--ctctctgcgttttctttatctctctaccgtggtaccaccgcattgtaacagtgtttcatcacagtaacaaacatcactagatttggatgcttatt |
202 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40551050 |
tttatctctctgcgttttctttatctctctaccgtggtaccaccgcattgcaacagtgtttcatcacagtaacaaacatcactagatttggatgcttatt |
40551149 |
T |
|
| Q |
203 |
acccaaaataatttctaaagacaacaaaaacaaacacatgcttatactctaatgggatatct |
264 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40551150 |
actcaaaataatttctaaagacaacaaaaacaaacacatgcttatactcggatgggatatct |
40551211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 8 - 264
Target Start/End: Original strand, 45274329 - 45274593
Alignment:
| Q |
8 |
aaatggatgacaatcattagattatgaaggtccatcttaactatcatggatgttttacaccatatttttc-caaatttgttgttcagttcatccc---gt |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| ||| || |
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|
| T |
45274329 |
aaatggatgacaatcattagattatgaaggtccatcttaactatcattgatgttttacaccatatttttttcaaatttgttgttgagttcacccctttgt |
45274428 |
T |
|
| Q |
104 |
ttttctctctg--cgttttctttatctc--tctaccgtggtaccaccgcattgtaacagtgtttcatcacagtaacaaacatcactagatttggatgctt |
199 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
45274429 |
ttttctctctctacgttttctttatctctctctaccgtggtaccaccgcattgtaagagtgtttcatcacggtaacaaacatcactagatttggatgctt |
45274528 |
T |
|
| Q |
200 |
attacccaaaataatttctaaagacaacaaaaacaaacacatgcttatactctaatgggatatct |
264 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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|
| T |
45274529 |
attatccaaaataatttctaaagacaacaaaaacaaacacatgcttattctctaatggaatatct |
45274593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 8 - 264
Target Start/End: Original strand, 47138835 - 47139098
Alignment:
| Q |
8 |
aaatggatgacaatcattagattatgaaggtccatcttaactatcatggatgttttacaccatatttttccaaatttgttgttcagttcatccc---gtt |
104 |
Q |
| |
|
||||| ||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| |
|
|
| T |
47138835 |
aaatgaatggcaaccattagattatgaaggttcatcttaactatcatggatgttttacaccatatttttttaaatttgttgttcagttcacccctttgtt |
47138934 |
T |
|
| Q |
105 |
tttctctct--gcgttttctttatctc--tctaccgtggtaccaccgcattgtaacagtgtttcatcacagtaacaaacatcactagatttggatgctta |
200 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47138935 |
tttctctctctgcgttttctttatctctctctaccgtggtaccaccgcattgtaacagtgtttcatcacagtaacaaacatcactagatttggatgctta |
47139034 |
T |
|
| Q |
201 |
ttacccaaaataatttctaaagacaacaaaaacaaacacatgcttatactctaatgggatatct |
264 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47139035 |
ttactcaaaataatttctaaagacaacaaaaacaaacacatgcttatactctaatgggatatct |
47139098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 8 - 264
Target Start/End: Complemental strand, 46211325 - 46211062
Alignment:
| Q |
8 |
aaatggatgacaatcattagattatgaaggtccatcttaactatcatggatgttttacaccatatttttccaaatttgttgttcagttcatccc---gtt |
104 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||| ||| |
|
|
| T |
46211325 |
aaatggatggtaaccattagattatgaaggtccatcttaactattatggatgttttacaccatattttttcaaatttgttgttcagttcacccctttgtt |
46211226 |
T |
|
| Q |
105 |
tttctctct--gcgttttctttatctctct--accgtggtaccaccgcattgtaacagtgtttcatcacagtaacaaacatcactagatttggatgctta |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
46211225 |
tttctctctctgcgttttctttatctctctctaccgtggtaccaccgcattgtaacaatgttacatcacattaacaaacatcactagatttggatgctta |
46211126 |
T |
|
| Q |
201 |
ttacccaaaataatttctaaagacaacaaaaacaaacacatgcttatactctaatgggatatct |
264 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
46211125 |
ttacccaaaataatttctaaacacaacaaaaacaaacacatgtttatactctaatgggatatct |
46211062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 22 - 264
Target Start/End: Complemental strand, 12654555 - 12654307
Alignment:
| Q |
22 |
cattagattatgaaggtccatcttaactatcatggatgttttacaccatatttttccaaatttgttgttcagttcatccc---gtttt--tctctctgcg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| ||||| ||||||| || |
|
|
| T |
12654555 |
cattagattatgaaggtccatcttaactatcatggatgttttacaccatattttttcaaatttgttgtt-agttcacccctttgtttttctctctcttcg |
12654457 |
T |
|
| Q |
117 |
ttttcttta--tctctctaccgtggtaccaccgcattgtaacagtgtttcatcacagtaacaaacatcactagatttggatgcttattacccaaaataat |
214 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12654456 |
ttttctttatctctctctaccgtggtaccaccgcatcgtaacattgtttcatcacagtaacaaacatcactagatttggatgcttattacccaaaataat |
12654357 |
T |
|
| Q |
215 |
ttctaaagacaacaaaaacaaacacatgcttatactctaatgggatatct |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12654356 |
ttctaaagacaacaaaaacaaacacatgcttatactctaatgggatatct |
12654307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 150 - 264
Target Start/End: Complemental strand, 37626343 - 37626229
Alignment:
| Q |
150 |
ttgtaacagtgtttcatcacagtaacaaacatcactagatttggatgcttattacccaaaataatttctaaagacaacaaaaacaaacacatgcttatac |
249 |
Q |
| |
|
|||||| || ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37626343 |
ttgtaatagcgtttcatcacaacaataaacatcactagatttggatgcttattacccaaaataatttctaaagacaacaaaaacaaacacatgcttatac |
37626244 |
T |
|
| Q |
250 |
tctaatgggatatct |
264 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37626243 |
tctaatgggatatct |
37626229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 37626438 - 37626349
Alignment:
| Q |
8 |
aaatggatgacaatcattagattatgaaggtccatcttaactatcatggatgttttacaccatatttttccaaatttgttgttcagttca |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37626438 |
aaatggatgacaatcattagattatgaaggtctatcttaactattatggatgttttacaccatatttttccaaatttgttgttcaattca |
37626349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 40813795 - 40814053
Alignment:
| Q |
8 |
aaatggatgacaatcattagattatgaaggtccatcttaactatcatggatgttttacaccatatttttccaaatttgttgttcagttcatcccgt---- |
103 |
Q |
| |
|
||||||||| ||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||| | |
|
|
| T |
40813795 |
aaatggatggcaaccattagattatgaaggtc-atcttaactattatggatgttttacaccatatttttttaaatttgttgttcagttcacccctttgtt |
40813893 |
T |
|
| Q |
104 |
-ttttctctctgcgttttctttatctctct--accgtggtaccaccgcattgtaacagtgtttcatcacagtaacaaacatcactagatttggatgctta |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40813894 |
gttctctctctgcgttttctttatctctctcaaccgtggtaccaccgcattgcaacagtgtttcatcacagtaacaaacatcactagatttggatgctta |
40813993 |
T |
|
| Q |
201 |
ttacccaaaataatttctaaagacaacaaaaacaaacacatgcttatactctaatgggat |
260 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40813994 |
ttatccaaaataatttctaaagacatcaaaaacaaacacatgcttatactctaatgggat |
40814053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 8 - 264
Target Start/End: Complemental strand, 27657918 - 27657672
Alignment:
| Q |
8 |
aaatggatgacaatcattagattatgaaggtccatcttaactatcatggatgttttacaccatatttttccaaatttgttgttcagttcatccc---gtt |
104 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||| |
|
|
| T |
27657918 |
aaatggatg-caatcattagattatgaaggtccatcttaactatcatggatgttttacaccatattttttcaaatttgttgttcagttcacccctttgtt |
27657820 |
T |
|
| Q |
105 |
tt-tctctctgcgttttcttta--tctctctaccgtggtaccaccgcattgtaacagtgtttcatcacagtaacaaacatcactagatttggatgcttat |
201 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27657819 |
ttctctctctgcgttttctttatctctctctaccgtggtaccaccgcattgtaacagtgttt---------------catcactagatttggatgcttat |
27657735 |
T |
|
| Q |
202 |
tacccaaaataatttctaaagacaacaaaaacaaacacatgcttatactctaatgggatatct |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27657734 |
tacccaaaataatttctaaagacaacaaaaacaaacacatatttatactctaatgggatatct |
27657672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 19975319 - 19975268
Alignment:
| Q |
213 |
atttctaaagacaacaaaaacaaacacatgcttatactctaatgggatatct |
264 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19975319 |
atttttaaagacaacaaaaacaaacacatgcttatactctaatgggatatct |
19975268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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