View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15516_low_11 (Length: 241)

Name: NF15516_low_11
Description: NF15516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15516_low_11
NF15516_low_11
[»] chr8 (1 HSPs)
chr8 (1-225)||(44732388-44732612)
[»] chr5 (1 HSPs)
chr5 (1-225)||(32798551-32798775)
[»] chr2 (1 HSPs)
chr2 (1-225)||(45336804-45337028)
[»] chr7 (2 HSPs)
chr7 (1-225)||(13110534-13110749)
chr7 (12-225)||(11679795-11680008)
[»] chr6 (1 HSPs)
chr6 (40-225)||(8405424-8405609)
[»] chr3 (4 HSPs)
chr3 (1-187)||(48026787-48026971)
chr3 (55-167)||(17729531-17729643)
chr3 (55-167)||(19030762-19030874)
chr3 (9-80)||(22132938-22133009)


Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 44732388 - 44732612
Alignment:
Q  1 atgatttgtgggctgtaaaaatgaagacttatttgagagctcaaagtttgtgggatgtggttgaaaagggcaacaatccaccacctctcccaaacaaccc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44732388 atgatttgtgggctgtaaaaatgaagacttatttgagagctcaaagtttgtgggatgtggttgaaaagggcaacaacccaccacctctcccaaacaaccc 44732487  T
Q  101 aacattagctcaaataagaaatcatagtgatgaagtggcaaaagaaggtagagctcttgccataatacatgcagctctacatgatgatatttttatcaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44732488 aacattagctcaaataagaaatcatagtgatgaagtggcaaaagaaggtagagctcttgccataatacatgcagctctacatgatgatatttttatcaag 44732587  T
Q  201 attttgaatcttgaaattgcaaaag 225  Q
    |||||||||||||||||||||||||    
T  44732588 attttgaatcttgaaattgcaaaag 44732612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 32798551 - 32798775
Alignment:
Q  1 atgatttgtgggctgtaaaaatgaagacttatttgagagctcaaagtttgtgggatgtggttgaaaagggcaacaatccaccacctctcccaaacaaccc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  32798551 atgatttgtgggctgtaaaaatgaagacttatttgagagctcaaagtttgtgggatgtggttgaaaatggcaacaacccaccacctctcccaaacaaccc 32798650  T
Q  101 aacattagctcaaataagaaatcatagtgatgaagtggcaaaagaaggtagagctcttgccataatacatgcagctctacatgatgatatttttatcaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32798651 aacattagctcaaataagaaatcatagtgatgaagtggcaaaagaaggtagagctcttgccataatacatgcagctctacatgatgatatttttatcaag 32798750  T
Q  201 attttgaatcttgaaattgcaaaag 225  Q
    |||||||||||||||||||||||||    
T  32798751 attttgaatcttgaaattgcaaaag 32798775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 45336804 - 45337028
Alignment:
Q  1 atgatttgtgggctgtaaaaatgaagacttatttgagagctcaaagtttgtgggatgtggttgaaaagggcaacaatccaccacctctcccaaacaaccc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  45336804 atgatttgtgggctgtaaaaatgaagacttatttgagagctcaaagtttgtgggatgtggttgaaaatggcaacaacccaccacctctcccaaacaaccc 45336903  T
Q  101 aacattagctcaaataagaaatcatagtgatgaagtggcaaaagaaggtagagctcttgccataatacatgcagctctacatgatgatatttttatcaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45336904 aacattagctcaaataagaaatcatagtgatgaagtggcaaaagaaggtagagctcttgccataatacatgcagctctacatgatgatatttttatcaag 45337003  T
Q  201 attttgaatcttgaaattgcaaaag 225  Q
    |||||||||||||||||||||||||    
T  45337004 attttgaatcttgaaattgcaaaag 45337028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 13110749 - 13110534
Alignment:
Q  1 atgatttgtgggctgtaaaaatgaagacttatttgagagctcaaagtttgtgggatgtggttgaaaagggcaacaatccaccacctctcccaaacaaccc 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13110749 atgatttgtgggctgtaaaaatgaagacttatttgagagcttaaagttcatgggatgtggttgaaaagggcaacaacccaccacctctcccaaacaaccc 13110650  T
Q  101 aacattagctcaaataagaaatcatagtgatgaagtggcaaaagaaggtagagctcttgccataatacatgcagctctacatgatgatatttttatcaag 200  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||         |||||||||||||| |||    
T  13110649 aacattagctcaaataagaaatcatagtgatgatgtggcaaaagaaggtagagctcttgccataatacatgca---------gatgatatttttattaag 13110559  T
Q  201 attttgaatcttgaaattgcaaaag 225  Q
    |||||||||||| ||||||||||||    
T  13110558 attttgaatctttaaattgcaaaag 13110534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 11680008 - 11679795
Alignment:
Q  12 gctgtaaaaatgaagacttatttgagagctcaaagtttgtgggatgtggttgaaaagggcaacaatccaccacctctcccaaacaacccaacattagctc 111  Q
    |||||||||  |||||||||||||||||||  |||||| || |||||| |||||||||| | ||||||  |||||||| ||||||||| |||||||||||    
T  11680008 gctgtaaaatagaagacttatttgagagcttgaagtttatgcgatgtgattgaaaagggtagcaatccgtcacctctctcaaacaacctaacattagctc 11679909  T
Q  112 aaataagaaatcatagtgatgaagtggcaaaagaaggtagagctcttgccataatacatgcagctctacatgatgatatttttatcaagattttgaatct 211  Q
    |||| |||||||| ||| ||||||||||||||||||||||||| |||||||||||||||| | ||||| |||||||||||||| ||||||||||||||||    
T  11679908 aaatgagaaatcacagtaatgaagtggcaaaagaaggtagagcccttgccataatacatggacctctatatgatgatatttttctcaagattttgaatct 11679809  T
Q  212 tgaaattgcaaaag 225  Q
    ||||||||||||||    
T  11679808 tgaaattgcaaaag 11679795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 40 - 225
Target Start/End: Complemental strand, 8405609 - 8405424
Alignment:
Q  40 ctcaaagtttgtgggatgtggttgaaaagggcaacaatccaccacctctcccaaacaacccaacattagctcaaataagaaatcatagtgatgaagtggc 139  Q
    |||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||    
T  8405609 ctcaaaatttatgggatgtggttgaaaagggcaacaacccaccacctctcccaaacaacccaacattagcttaaataaaaaatcacagtgatgaagtggc 8405510  T
Q  140 aaaagaaggtagagctcttgccataatacatgcagctctacatgatgatatttttatcaagattttgaatcttgaaattgcaaaag 225  Q
    ||| || |||||||| ||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8405509 aaaggagggtagagcccttgccatagtacatacaactctacatgatgatatttttatcaagattttgaatcttaaaattgcaaaag 8405424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 7e-64; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 48026971 - 48026787
Alignment:
Q  1 atgatttgtgggctgtaaaaatgaagacttatttgagagctcaaagtttgtgggatgtggttgaaaagggcaacaatccaccacctctcccaaacaaccc 100  Q
    |||||||||||||||||||||||||||||||||| || |||||  |||| ||||||||||||||||||||||   | |||||||||||||| ||||||||    
T  48026971 atgatttgtgggctgtaaaaatgaagacttatttcagggctca--gtttatgggatgtggttgaaaagggcagtgacccaccacctctcccgaacaaccc 48026874  T
Q  101 aacattagctcaaataagaaatcatagtgatgaagtggcaaaagaaggtagagctcttgccataatacatgcagctctacatgatga 187  Q
    |||||||||||||| ||||||||| ||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||    
T  48026873 aacattagctcaaacaagaaatcacagtgatgaagtggaaaaaaaaggtagcgctcttgccataatacatgcagctctacatgatga 48026787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 55 - 167
Target Start/End: Original strand, 17729531 - 17729643
Alignment:
Q  55 atgtggttgaaaagggcaacaatccaccacctctcccaaacaacccaacattagctcaaataagaaatcatagtgatgaagtggcaaaagaaggtagagc 154  Q
    ||||||||||||||| || ||| || |||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||| ||| ||    
T  17729531 atgtggttgaaaaggacagcaacccgccacctctcccaaacaacccaacattagcttaaataaaaaatcatagtgatgaagttgcaaaagaagatagtgc 17729630  T
Q  155 tcttgccataata 167  Q
    |||||||||||||    
T  17729631 tcttgccataata 17729643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 55 - 167
Target Start/End: Original strand, 19030762 - 19030874
Alignment:
Q  55 atgtggttgaaaagggcaacaatccaccacctctcccaaacaacccaacattagctcaaataagaaatcatagtgatgaagtggcaaaagaaggtagagc 154  Q
    ||||||||||||||| || ||| || |||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||| ||| ||    
T  19030762 atgtggttgaaaaggacagcaacccgccacctctcccaaacaacccaacattagcttaaataaaaaatcatagtgatgaagttgcaaaagaagatagtgc 19030861  T
Q  155 tcttgccataata 167  Q
    |||||||||||||    
T  19030862 tcttgccataata 19030874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 22132938 - 22133009
Alignment:
Q  9 tgggctgtaaaaatgaagacttatttgagagctcaaagtttgtgggatgtggttgaaaagggcaacaatcca 80  Q
    ||||||| ||| ||||| || ||||||||||| |||||||||||||| ||||| ||||| || | |||||||    
T  22132938 tgggctgcaaagatgaaaacctatttgagagcacaaagtttgtgggaagtggtagaaaatgggagcaatcca 22133009  T

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