View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15516_low_13 (Length: 221)

Name: NF15516_low_13
Description: NF15516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15516_low_13
NF15516_low_13
[»] chr7 (2 HSPs)
chr7 (30-204)||(21911097-21911271)
chr7 (56-104)||(8812780-8812828)
[»] scaffold0104 (1 HSPs)
scaffold0104 (56-104)||(37295-37343)
[»] scaffold0019 (1 HSPs)
scaffold0019 (56-104)||(19496-19544)
[»] chr6 (1 HSPs)
chr6 (56-104)||(621036-621084)
[»] chr5 (1 HSPs)
chr5 (56-104)||(7259826-7259874)
[»] chr4 (1 HSPs)
chr4 (56-104)||(15900639-15900687)
[»] chr3 (1 HSPs)
chr3 (56-104)||(11183765-11183813)
[»] chr2 (1 HSPs)
chr2 (56-104)||(24701285-24701333)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 30 - 204
Target Start/End: Complemental strand, 21911271 - 21911097
Alignment:
Q  30 gtatgtttattcatcattttgggtgtttgtaaacatcacagatatggactttgaaaggaggaacactaagaaatatgacttcgagttcgtcatggaaatt 129  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21911271 gtatgtttcttcatcattttgggtgtttgtaaacatcacagatatggactttgaaaggaggaacactaagaaatatgacttcgagttcgtcatggaaatt 21911172  T
Q  130 tgcttagcatcctcaagacaaattttgaagaaggagtcctcaatacgttcgtccaattctatgacccatcctatg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21911171 tgcttagcatcctcaagacaaattttgaagaaggagtcctcaatacgttagtccaattctatgacccatcctatg 21911097  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 8812780 - 8812828
Alignment:
Q  56 ttgtaaacatcacagatatggactttgaaaggaggaacactaagaaata 104  Q
    |||||||||||| |||||||||| ||| ||| |||||||| ||||||||    
T  8812780 ttgtaaacatcaaagatatggaccttgtaagaaggaacaccaagaaata 8812828  T

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Target: scaffold0104 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 37343 - 37295
Alignment:
Q  56 ttgtaaacatcacagatatggactttgaaaggaggaacactaagaaata 104  Q
    |||||||||||| |||||||| ||||| ||| |||||||| ||||||||    
T  37343 ttgtaaacatcaaagatatggtctttgtaagaaggaacaccaagaaata 37295  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 19544 - 19496
Alignment:
Q  56 ttgtaaacatcacagatatggactttgaaaggaggaacactaagaaata 104  Q
    |||||||||||| |||||||||| ||| ||| |||||||| ||||||||    
T  19544 ttgtaaacatcaaagatatggaccttgtaagaaggaacaccaagaaata 19496  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 621084 - 621036
Alignment:
Q  56 ttgtaaacatcacagatatggactttgaaaggaggaacactaagaaata 104  Q
    |||||||||||| |||||||||| ||| ||| |||||||| ||||||||    
T  621084 ttgtaaacatcaaagatatggaccttgtaagaaggaacaccaagaaata 621036  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 7259874 - 7259826
Alignment:
Q  56 ttgtaaacatcacagatatggactttgaaaggaggaacactaagaaata 104  Q
    |||||||||||| |||||||||| ||| ||| |||||||| ||||||||    
T  7259874 ttgtaaacatcaaagatatggaccttgtaagaaggaacaccaagaaata 7259826  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 15900687 - 15900639
Alignment:
Q  56 ttgtaaacatcacagatatggactttgaaaggaggaacactaagaaata 104  Q
    |||||||||||| |||||||| | ||| ||| |||||||||||||||||    
T  15900687 ttgtaaacatcaaagatatggtccttgtaagaaggaacactaagaaata 15900639  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 11183765 - 11183813
Alignment:
Q  56 ttgtaaacatcacagatatggactttgaaaggaggaacactaagaaata 104  Q
    |||||||||||| |||||||| | ||| ||| |||||||||||||||||    
T  11183765 ttgtaaacatcaaagatatggtccttgcaagaaggaacactaagaaata 11183813  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 24701285 - 24701333
Alignment:
Q  56 ttgtaaacatcacagatatggactttgaaaggaggaacactaagaaata 104  Q
    |||||||||||| |||||||||| ||| ||| |||||||| ||||||||    
T  24701285 ttgtaaacatcaaagatatggaccttgtaagaaggaacaccaagaaata 24701333  T

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