View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15516_low_4 (Length: 565)

Name: NF15516_low_4
Description: NF15516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15516_low_4
NF15516_low_4
[»] chr2 (7 HSPs)
chr2 (19-547)||(39747390-39747919)
chr2 (45-313)||(27021643-27021909)
chr2 (19-188)||(27086443-27086609)
chr2 (19-287)||(26979987-26980252)
chr2 (395-502)||(27021487-27021594)
chr2 (395-502)||(27086802-27086909)
chr2 (447-542)||(26979746-26979838)
[»] chr4 (1 HSPs)
chr4 (19-324)||(1959435-1959739)
[»] chr6 (2 HSPs)
chr6 (19-287)||(34682385-34682650)
chr6 (447-502)||(34682181-34682236)
[»] chr8 (2 HSPs)
chr8 (25-287)||(11633420-11633679)
chr8 (399-542)||(11633196-11633336)
[»] chr3 (1 HSPs)
chr3 (66-140)||(33638781-33638855)


Alignment Details
Target: chr2 (Bit Score: 486; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 19 - 547
Target Start/End: Original strand, 39747390 - 39747919
Alignment:
Q  19 aatgtcaacgattgcgcgggcgtagattataactttttgtagttgtagaggttgtgatcgaattctctgcaacttcttctggaattgtaaagtctggatc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  39747390 aatgtcaacgattgcgcgggcgtagattataactttttgtagttgtagaggttgtgatcgaattctctgcaaattcttctggaattgaaaagtctggatc 39747489  T
Q  119 atcaaggcaattcacatcatcaggtaattcagtatctatccattgagaccaatccacatcatcagcagtagcaaagtcccaagacggctgctttgctttt 218  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39747490 atcaaggcaatttacatcatcaggtaaatcagtatctatccattgagaccaatccacatcatcagcagtagcaaagtcccaagacggctgctttgctttt 39747589  T
Q  219 tgtatgttgttaaattggttacttagtgttagtagcatttgatggttcaacctttcaaagtccctgcataaatattaacaaccgattcgctattagttta 318  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39747590 tgtatgttgttaaattggttgcttagtgttagtagcatttgatggttcaacctttcaaagtccctgcataaatgttaacaaccgattcgctattagttta 39747689  T
Q  319 ttttattttttataatcaaaagttctgatat-aaaaattatatatttacataaagtctacatataaatatcaaactattattgtttttacacttacttgt 417  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39747690 ttttattttttataatcaaaagttctggtataaaaaattatatatttacataaagtctacatataaatatcaaactattattgtttttacacttacttgt 39747789  T
Q  418 atgtgcaaattgcatatagaaattgaactgaagcagctactatgaaaaataatcggacattgtttattatccatgtttgtagctcaaagttgtcattact 517  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39747790 atgtgcaaattgcatatagaaattgaactgaagcagctaccatgaaaaataatcggacattgtttattatccatgtttgtagctccaagttgtcattact 39747889  T
Q  518 cattaaacgactaatgaatatttccgcagc 547  Q
    ||||||||||||||||||||||||||||||    
T  39747890 cattaaacgactaatgaatatttccgcagc 39747919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 45 - 313
Target Start/End: Complemental strand, 27021909 - 27021643
Alignment:
Q  45 ttataactttttgtagttgtagaggttgtgatcgaattctctgcaacttcttctggaattgtaaagtctggatcatcaaggcaattcacatcatcaggta 144  Q
    ||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||||||   ||||| ||||||||||||||||| |||||||||||||    
T  27021909 ttataactttttgt---tgtggaggttgtgatagaattctctgcaacttcttctggaattacgaagtccggatcatcaaggcaatttacatcatcaggta 27021813  T
Q  145 attcagtatctatccattgagaccaatccacatcatcagcagtagcaaagtcccaagacggctgctttgctttttgtatgttgttaaattggttacttag 244  Q
    | || ||||||| ||||||||||||||||||||  |||| |||| | || |||||||  | || |||   |||||| ||| |||| |  |  |||   ||    
T  27021812 aatcggtatctacccattgagaccaatccacatagtcagtagtatcgaattcccaagttgactccttcaatttttgcatgctgtttatcttattaaccag 27021713  T
Q  245 tgttagtagcatttgatggttcaacctttcaaagtccctgcataaat-attaacaaccgattcgctatta 313  Q
    |||||| ||||||||||||||||| |||||| ||||||||||||| | |||||||||| |||| ||||||    
T  27021712 tgttaggagcatttgatggttcaatctttcatagtccctgcataattaattaacaaccaattctctatta 27021643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 27086443 - 27086609
Alignment:
Q  19 aatgtcaacgattgcgcgggcgtagattataactttttgtagttgtagaggttgtgatcgaattctctgcaacttcttctggaattgtaaagtctggatc 118  Q
    ||||| |||||||||| | ||| |  ||||||||||||||   ||| ||||||||||| ||||||||||||||||||||||||||   |||||| |||||    
T  27086443 aatgtaaacgattgcgtgagcgcaagttataactttttgt---tgtggaggttgtgattgaattctctgcaacttcttctggaatcacaaagtccggatc 27086539  T
Q  119 atcaaggcaattcacatcatcaggtaattcagtatctatccattgagaccaatccacatcatcagcagta 188  Q
    ||||||||||||||||||||||||||  ||| |||||||| |||||||||||||||||| ||||| ||||    
T  27086540 atcaaggcaattcacatcatcaggtatatcaatatctatcaattgagaccaatccacataatcagtagta 27086609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 26980252 - 26979987
Alignment:
Q  19 aatgtcaacgattgcgcgggcgtagattataactttttgtagttgtagaggttgtgatcgaattctctgcaacttcttctggaattgtaaagtctggatc 118  Q
    ||||| |||||||||| | |||||  |||||| |||||||   ||| ||| ||||||| ||||||||||||||||||||||||||   |||||| |||||    
T  26980252 aatgtaaacgattgcgtgagcgtaagttataattttttgt---tgtggagtttgtgattgaattctctgcaacttcttctggaatcacaaagtccggatc 26980156  T
Q  119 atcaaggcaattcacatcatcaggtaattcagtatctatccattgagaccaatccacatcatcagcagtagcaaagtcccaagacggctgctttgctttt 218  Q
    |||||||||||| |||||||||||||| |||||| ||||| | |||||||||||||||| ||||| |||| | || ||||||   |  | |||   ||||    
T  26980155 atcaaggcaattgacatcatcaggtaaatcagtacctatcaactgagaccaatccacataatcagtagtatcgaaatcccaatttgaatccttcaatttt 26980056  T
Q  219 tgtatgttgttaaattggttacttagtgttagtagcatttgatggttcaacctttcaaagtccctgcat 287  Q
    |  |||||||| |  |  ||| |||||||||| |||||||||||||||||||||||| | |||||||||    
T  26980055 tccatgttgtttatcttattaattagtgttaggagcatttgatggttcaacctttcataatccctgcat 26979987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 395 - 502
Target Start/End: Complemental strand, 27021594 - 27021487
Alignment:
Q  395 ttattgtttttacacttacttgtatgtgcaaattgcatatagaaattgaactgaagcagctactatgaaaaataatcggacattgtttattatccatgtt 494  Q
    |||||| || ||||||||| |||||||| |||||||||| ||||  ||| |||||||||||||  | |||||||||||||| ||||||||||| |||||     
T  27021594 ttattgcttgtacacttacctgtatgtgaaaattgcatacagaagatgagctgaagcagctaccttaaaaaataatcggaccttgtttattatgcatgtc 27021495  T
Q  495 tgtagctc 502  Q
    ||| ||||    
T  27021494 tgttgctc 27021487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 395 - 502
Target Start/End: Original strand, 27086802 - 27086909
Alignment:
Q  395 ttattgtttttacacttacttgtatgtgcaaattgcatatagaaattgaactgaagcagctactatgaaaaataatcggacattgtttattatccatgtt 494  Q
    |||||| || || |||||| ||||||||  ||||||||| | || |||| | ||||||||||| || |||||||| ||||| ||||||||||||||||||    
T  27086802 ttattgcttgtatacttacctgtatgtgacaattgcatacataagttgagccgaagcagctaccataaaaaataaccggaccttgtttattatccatgtt 27086901  T
Q  495 tgtagctc 502  Q
    ||| ||||    
T  27086902 tgttgctc 27086909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 447 - 542
Target Start/End: Complemental strand, 26979838 - 26979746
Alignment:
Q  447 gaagcagctactatgaaaaataatcggacattgtttattatccatgtttgtagctcaaagttgtcattactcattaaacgactaatgaatatttcc 542  Q
    |||||||||||  | |||||||||||||| ||||||||||||||||||||| |||| |   |||||| | || |||||||| ||||||||| ||||    
T  26979838 gaagcagctaccgtaaaaaataatcggaccttgtttattatccatgtttgttgctcta---tgtcatcattcgttaaacgaataatgaatacttcc 26979746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 1959435 - 1959739
Alignment:
Q  19 aatgtcaacgattgcgcgggcgtagattataactttttgtagttgtagaggttgtgatcgaattctctgcaacttcttctggaattgtaaagtctggatc 118  Q
    ||||| ||| ||||||||  |||| ||||||| |||| ||| |||  ||||||||| ||||||||||||||||||||| ||| |||||| ||| | ||||    
T  1959435 aatgttaacaattgcgcgaacgtaaattataagtttt-gtaattgctgaggttgtggtcgaattctctgcaacttcttatggtattgtatagtttagatc 1959533  T
Q  119 atcaaggcaattcacatcatcaggtaattcagtatctatccattgagaccaatccacatcatcagca---gtagcaaagtcccaagacggctgctttgct 215  Q
    |||| | |||||||||||||||| ||| ||| ||| |||||||||||| ||||||||||||||| ||   |||| ||| || ||||| | ||| ||||||    
T  1959534 atcatgacaattcacatcatcag-taaatcaatatatatccattgagaacaatccacatcatcatcaacagtagaaaaatctcaagatgactgatttgct 1959632  T
Q  216 ttttgtatgttgttaaattggttacttagtgttagtagcatttgatggttcaacctttcaaagtccctgcataaatattaacaaccgattcgctattagt 315  Q
    |||||||| |||||| |||||||| |||||||||||| ||||||||| ||||||||||| |||||  ||  | ||||||||||||  |||| |||||  |    
T  1959633 ttttgtattttgttagattggttagttagtgttagtaacatttgatg-ttcaacctttcgaagtct-tgtgtgaatattaacaactaattcactatttat 1959730  T
Q  316 ttattttat 324  Q
    |||||||||    
T  1959731 ttattttat 1959739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 34682650 - 34682385
Alignment:
Q  19 aatgtcaacgattgcgcgggcgtagattataactttttgtagttgtagaggttgtgatcgaattctctgcaacttcttctggaattgtaaagtctggatc 118  Q
    ||||| |||||||||| | |||||  |||||| |||||||   ||| ||| ||||||| ||||||||||||||||||||||||||   |||||| |||||    
T  34682650 aatgtaaacgattgcgtgagcgtaagttataattttttgt---tgtggagattgtgattgaattctctgcaacttcttctggaatcacaaagtccggatc 34682554  T
Q  119 atcaaggcaattcacatcatcaggtaattcagtatctatccattgagaccaatccacatcatcagcagtagcaaagtcccaagacggctgctttgctttt 218  Q
    |||||||||||| |||||||||||||| |||||| ||||| | |||||||||||||||| ||||| |||| | || ||||||   |  | |||   ||||    
T  34682553 atcaaggcaattgacatcatcaggtaaatcagtacctatcaactgagaccaatccacataatcagtagtatcgaaatcccaatttgaatccttcaatttt 34682454  T
Q  219 tgtatgttgttaaattggttacttagtgttagtagcatttgatggttcaacctttcaaagtccctgcat 287  Q
    |  |||||||| |  |  |||  ||||||||| |||||||||||||||||||||||| | |||||||||    
T  34682453 tccatgttgtttatcttattaagtagtgttaggagcatttgatggttcaacctttcataatccctgcat 34682385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 447 - 502
Target Start/End: Complemental strand, 34682236 - 34682181
Alignment:
Q  447 gaagcagctactatgaaaaataatcggacattgtttattatccatgtttgtagctc 502  Q
    ||||||||||| || |||||||||||||| ||||||||||||||||||||| ||||    
T  34682236 gaagcagctaccatcaaaaataatcggaccttgtttattatccatgtttgttgctc 34682181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 25 - 287
Target Start/End: Complemental strand, 11633679 - 11633420
Alignment:
Q  25 aacgattgcgcgggcgtagattataactttttgtagttgtagaggttgtgatcgaattctctgcaacttcttctggaattgtaaagtctggatcatcaag 124  Q
    |||||||||| | ||| ||||||||| ||||||    | ||||| ||||||| |||||||||||||||||||| |||| |  |||||| |||||||||||    
T  11633679 aacgattgcgtgagcgcagattataattttttga---tatagagcttgtgattgaattctctgcaacttcttcaggaactacaaagtccggatcatcaag 11633583  T
Q  125 gcaattcacatcatcaggtaattcagtatctatccattgagaccaatccacatcatcagcagtagcaaagtcccaagacggctgctttgctttttgtatg 224  Q
     || ||||||||||||||||| |||||||| | | || ||||||||||||||| |||||  ||  || |||||||||  | || |||   |||||| |||    
T  11633582 acagttcacatcatcaggtaaatcagtatcaagcaatcgagaccaatccacataatcagttgtttcagagtcccaagttgtctccttcaatttttgaatg 11633483  T
Q  225 ttgttaaattggttacttagtgttagtagcatttgatggttcaacctttcaaagtccctgcat 287  Q
    |||||||  |  |||  ||||||||| ||||| |||||||||||||||||| |||||||||||    
T  11633482 ttgttaatctcattaactagtgttaggagcatatgatggttcaacctttcatagtccctgcat 11633420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 399 - 542
Target Start/End: Complemental strand, 11633336 - 11633196
Alignment:
Q  399 tgtttttacacttacttgtatgtgcaaattgcatatagaaattgaactgaagcagctactatgaaaaataatcggacattgtttattatccatgtttgta 498  Q
    ||||| || |||||| | |||||| |||||| ||| | || |||||||||||||||| | || |||||||| ||||| |||||||||||||||||||||     
T  11633336 tgtttgtatacttacctatatgtgaaaattgtatacataagttgaactgaagcagctgccataaaaaataaacggacgttgtttattatccatgtttgtt 11633237  T
Q  499 gctcaaagttgtcattactcattaaacgactaatgaatatttcc 542  Q
    |||||| || |||||   || |||||||| ||||||||| ||||    
T  11633236 gctcaatgtcgtcat---tcgttaaacgaataatgaatacttcc 11633196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 66 - 140
Target Start/End: Complemental strand, 33638855 - 33638781
Alignment:
Q  66 gaggttgtgatcgaattctctgcaacttcttctggaattgtaaagtctggatcatcaaggcaattcacatcatca 140  Q
    |||||| |||| ||||||||||||||||||||||||||   |||||| |||||||||||||||||||||| ||||    
T  33638855 gaggttatgattgaattctctgcaacttcttctggaatcacaaagtccggatcatcaaggcaattcacattatca 33638781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University