View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15516_low_6 (Length: 459)
Name: NF15516_low_6
Description: NF15516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15516_low_6 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 11968440 - 11968833
Alignment:
| Q |
1 |
cgatggggaaattatttgtatacaacatgtgaatcaatggaatgttggagatgaattct--caaaggctatggaaaataataagagaacattgtgatagg |
98 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
11968440 |
cgatggggaaattatttgtatacaacatgtaaatcaatggaatgttggagatgaattcttacaaaggctatggaaaataataagagaacattgtgataag |
11968539 |
T |
|
| Q |
99 |
gaatgatgtgtgatagatataagagaggcagtatatcgtacacatgatagtgagagactggcaagggcacctttttgagagtcagagaaataaacaacta |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||| |
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| T |
11968540 |
gaatgatgtgtgatagatataagagaggcagtatatcgtacacatgatagtgagagaccggcaaggacaccgttttgagagtcagagaaataaacaacta |
11968639 |
T |
|
| Q |
199 |
ggatatattacatgtgatagaatgaaatagctaattagtagaactttgctccaactgcatcaaatttt-aacgtgggtgaattgtggagaaaccgtaacc |
297 |
Q |
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| T |
11968640 |
ggagattttacatgtgatagaatgaaatagctaattagtagaactttgctccaactccatcaaattttaaacgtgggtgaattgtggagaaaccgtaacc |
11968739 |
T |
|
| Q |
298 |
actaactactctagtcagtcaaag---ttattacctaaaagataggaacaaatgaatataaataactataattcgacgtggctagcatcttttt |
388 |
Q |
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| T |
11968740 |
actaactactctagtcggtcaaagttattattacctaaaagataggaacaaatgaatataaataaccatcattcaacgtggctggcatcttttt |
11968833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 423
Target Start/End: Original strand, 11968856 - 11968897
Alignment:
| Q |
384 |
tttttcttcaaggtat--tagttctattaacaagaataacaa |
423 |
Q |
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| T |
11968856 |
tttttcttcaaggtatattagttctattaacaagaataacaa |
11968897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 459
Target Start/End: Original strand, 11969074 - 11969111
Alignment:
| Q |
422 |
aattgattaataaaaatgaactatgtaaaggaaaatct |
459 |
Q |
| |
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|||||||||||||||| |||||||||||| |||||||| |
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| T |
11969074 |
aattgattaataaaaaagaactatgtaaaagaaaatct |
11969111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 40458571 - 40458482
Alignment:
| Q |
7 |
ggaaattatttgtatacaacatgtgaatcaatggaatgttggagatgaattctcaaaggctatggaaaataataagagaacattgtgata |
96 |
Q |
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| T |
40458571 |
ggaaaatatttgtatacaacatgtgaaccaatggaatgatgaagatgtatgctcgaagactatgagaaataataagagaacattgtgata |
40458482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 43408341 - 43408430
Alignment:
| Q |
7 |
ggaaattatttgtatacaacatgtgaatcaatggaatgttggagatgaattctcaaaggctatggaaaataataagagaacattgtgata |
96 |
Q |
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||||| ||||||||||||||||||||| |||||||||| || ||||| || ||| ||| ||||| |||||||||||||||||||||||| |
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| T |
43408341 |
ggaaaatatttgtatacaacatgtgaaccaatggaatgatgaagatgtatgctcgaagactatgagaaataataagagaacattgtgata |
43408430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 37667732 - 37667821
Alignment:
| Q |
7 |
ggaaattatttgtatacaacatgtgaatcaatggaatgttggagatgaattctcaaaggctatggaaaataataagagaacattgtgata |
96 |
Q |
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||||| ||||| | ||||||||||||| |||||||||| || ||||| || ||| ||| |||| |||||||||| ||||||||||||||| |
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| T |
37667732 |
ggaaaatatttttctacaacatgtgaaccaatggaatgatgaagatgtatgctcgaagactatagaaaataataggagaacattgtgata |
37667821 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 351
Target Start/End: Original strand, 36387390 - 36387445
Alignment:
| Q |
296 |
ccactaactactctagtcagtcaaagttattacctaaaagataggaacaaatgaat |
351 |
Q |
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||||||||||||||| | |||||||||||| ||||||||||||||| ||||||||| |
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| T |
36387390 |
ccactaactactctaattagtcaaagttatgacctaaaagataggaccaaatgaat |
36387445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 22403404 - 22403321
Alignment:
| Q |
13 |
tatttgtatacaacatgtgaatcaatggaatgttggagatgaattctcaaaggctatggaaaataataagagaacattgtgata |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || ||||||| | || ||||||||||||||| || ||||| |
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| T |
22403404 |
tatttgtatacaacatgtgaatcaatggaatgttggagatgtatgctcaaagaccataagaaataataagagaactttttgata |
22403321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 194501 - 194411
Alignment:
| Q |
13 |
tatttgtatacaacatgtgaatcaatggaatgttggagatgaattctcaaaggctatggaaaataataagagaacattgtgatagggaatgat |
105 |
Q |
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|||||||||||||||| ||||||||||||| |||||||||| || ||||||| | ||| ||||||||||||| |||||||||| || ||||| |
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| T |
194501 |
tatttgtatacaacatatgaatcaatggaacgttggagatgtatgctcaaagac--tgggaaataataagagagcattgtgatatgggatgat |
194411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 351
Target Start/End: Original strand, 243734 - 243789
Alignment:
| Q |
296 |
ccactaactactctagtcagtcaaagttattacctaaaagataggaacaaatgaat |
351 |
Q |
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||||||||||||||| | |||||| |||| ||||||||||||||| ||||||||| |
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| T |
243734 |
ccactaactactctaattagtcaagattatgacctaaaagataggaccaaatgaat |
243789 |
T |
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