View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15516_low_8 (Length: 292)

Name: NF15516_low_8
Description: NF15516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15516_low_8
NF15516_low_8
[»] chr8 (3 HSPs)
chr8 (16-170)||(10044143-10044299)
chr8 (171-250)||(44734096-44734175)
chr8 (172-250)||(44731786-44731864)
[»] chr5 (3 HSPs)
chr5 (170-250)||(32797949-32798029)
chr5 (171-250)||(32800262-32800341)
chr5 (245-280)||(14231664-14231699)
[»] chr3 (3 HSPs)
chr3 (170-250)||(48707822-48707902)
chr3 (171-250)||(28784457-28784536)
chr3 (171-233)||(5907718-5907781)
[»] chr2 (3 HSPs)
chr2 (171-250)||(45338515-45338594)
chr2 (171-246)||(45336203-45336278)
chr2 (168-212)||(17648808-17648852)
[»] chr1 (2 HSPs)
chr1 (171-246)||(1550100-1550175)
chr1 (171-250)||(9535199-9535278)
[»] chr4 (2 HSPs)
chr4 (170-250)||(22804552-22804632)
chr4 (171-233)||(44640115-44640179)


Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 10044299 - 10044143
Alignment:
Q  16 tactataaataggttaaaagcctcc--tagggctgcagcgaaatccacatctaatcttgttacgatgaaggagattattttgcgtggggccttgttactt 113  Q
    |||||||||||||||||||||||||  ||||| |||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  10044299 tactataaataggttaaaagcctccattagggttgcagcgaaaaccacatctaatcctgttatgatgaaggagattattttgcgtggggccttgttactt 10044200  T
Q  114 ggaattcttttcagtttgtgtttctttctcagtttttcttctgctggctttcataat 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10044199 ggaattcttttcagtttgtgtttctttctcagtttttcttctgctggctttcataat 10044143  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 44734096 - 44734175
Alignment:
Q  171 tgttggagattgatatttttctgatttaataattaattgtgttgttattttctgtcatgattaatgtgttgcttgtttaa 250  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44734096 tgttggagattgatatttttctgatttaaaaattaattgtgttgttattttctgtcataattaatgtgttgcttgtttaa 44734175  T

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Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 172 - 250
Target Start/End: Original strand, 44731786 - 44731864
Alignment:
Q  172 gttggagattgatatttttctgatttaataattaattgtgttgttattttctgtcatgattaatgtgttgcttgtttaa 250  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44731786 gttggagattgatatttttctgatttaaaaattaattgtgttgttattttctgtcataattaatgtgttgcttgtttaa 44731864  T

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Target: chr5 (Bit Score: 77; Significance: 9e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 32797949 - 32798029
Alignment:
Q  170 ttgttggagattgatatttttctgatttaataattaattgtgttgttattttctgtcatgattaatgtgttgcttgtttaa 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32797949 ttgttggagattgatatttttctgatttaataattaattgtgttgttattttctgtcataattaatgtgttgcttgtttaa 32798029  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 32800262 - 32800341
Alignment:
Q  171 tgttggagattgatatttttctgatttaataattaattgtgttgttattttctgtcatgattaatgtgttgcttgtttaa 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32800262 tgttggagattgatatttttctgatttaataattaattgtgttgttattttctgtcataattaatgtgttgcttgtttaa 32800341  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 245 - 280
Target Start/End: Original strand, 14231664 - 14231699
Alignment:
Q  245 gtttaaaattttatggtaggtctaaatgttatatgt 280  Q
    ||||||||||||||||||||||| ||||||||||||    
T  14231664 gtttaaaattttatggtaggtctcaatgttatatgt 14231699  T

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Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 48707902 - 48707822
Alignment:
Q  170 ttgttggagattgatatttttctgatttaataattaattgtgttgttattttctgtcatgattaatgtgttgcttgtttaa 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  48707902 ttgttggagattgatatttttctgatttaataattaattgtgttgttattttctgtcataattaatgtgttgcttgtttaa 48707822  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 28784457 - 28784536
Alignment:
Q  171 tgttggagattgatatttttctgatttaataattaattgtgttgttattttctgtcatgattaatgtgttgcttgtttaa 250  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  28784457 tgttggagattgatatttttctgatttaaaaattaattgtgttgttattttctctcataattaatgtgttgcttgtttaa 28784536  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 5907718 - 5907781
Alignment:
Q  171 tgttggagattgatatttttctgatttaataattaattgtg-ttgttattttctgtcatgatta 233  Q
    ||||||||||||||||||||||| ||||||||||| ||||| |||| |||||||||||| ||||    
T  5907718 tgttggagattgatatttttctggtttaataattacttgtgtttgtaattttctgtcataatta 5907781  T

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Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 45338515 - 45338594
Alignment:
Q  171 tgttggagattgatatttttctgatttaataattaattgtgttgttattttctgtcatgattaatgtgttgcttgtttaa 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  45338515 tgttggagattgatatttttctgatttaataattaattgtgttgttattttctgtcataattaatgtgttgcttgtttaa 45338594  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 171 - 246
Target Start/End: Original strand, 45336203 - 45336278
Alignment:
Q  171 tgttggagattgatatttttctgatttaataattaattgtgttgttattttctgtcatgattaatgtgttgcttgt 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  45336203 tgttggagattgatatttttctgatttaataattaattgtgttgttattttctgtcataattaatgtgttgcttgt 45336278  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 17648808 - 17648852
Alignment:
Q  168 aattgttggagattgatatttttctgatttaataattaattgtgt 212  Q
    |||||||||||||||||||||||||| |||  |||||| ||||||    
T  17648808 aattgttggagattgatatttttctgttttgttaattacttgtgt 17648852  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 171 - 246
Target Start/End: Original strand, 1550100 - 1550175
Alignment:
Q  171 tgttggagattgatatttttctgatttaataattaattgtgttgttattttctgtcatgattaatgtgttgcttgt 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  1550100 tgttggagattgatatttttctgatttaataattaattgtgttgttattttatgtcataattaatgtgttgcttgt 1550175  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 9535199 - 9535278
Alignment:
Q  171 tgttggagattgatatttttctgatttaataattaattgtgttgttattttctgtcatgattaatgtgttgcttgtttaa 250  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  9535199 tgttggagattgatatttttctggtttaataattaattgtgttgttattttctgtcaaaattaatgtgttgcttgtttaa 9535278  T

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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 22804552 - 22804632
Alignment:
Q  170 ttgttggagattgatatttttctgatttaataattaattgtgttgttattttctgtcatgattaatgtgttgcttgtttaa 250  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||    
T  22804552 ttgttggagattgatatttttctggtttaataattaattgtgttgttattttctctcataattaatgcgttgcttgtttaa 22804632  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 44640115 - 44640179
Alignment:
Q  171 tgttggagattgatatttttctgatttaat-aattaattgtgttgtt-attttctgtcatgatta 233  Q
    ||||||||||||||||||||||| |||||| ||| | ||||||||||  ||||||||||| ||||    
T  44640115 tgttggagattgatatttttctggtttaataaatgatttgtgttgttgtttttctgtcataatta 44640179  T

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